Wall clock time and date at job start Thu Apr 9 2020 12:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 119.99702 * 2 1 4 4 H 1.48499 * 109.46972 * 269.99971 * 3 2 1 5 5 H 1.48500 * 109.47271 * 30.00004 * 3 2 1 6 6 H 1.48503 * 109.46752 * 149.99844 * 3 2 1 7 7 C 1.38644 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00307 * 179.97438 * 7 2 1 9 9 O 1.34821 * 120.00279 * 0.02562 * 7 2 1 10 10 C 1.35696 * 117.00284 * 185.05788 * 9 7 2 11 11 C 1.38998 * 119.94848 * 354.45367 * 10 9 7 12 12 C 1.37832 * 120.05692 * 180.02562 * 11 10 9 13 13 C 1.39443 * 119.94255 * 359.97438 * 12 11 10 14 14 C 1.48327 * 120.04907 * 179.97438 * 13 12 11 15 15 C 1.39380 * 120.12022 * 179.97438 * 14 13 12 16 16 C 1.38009 * 119.86747 * 180.02562 * 15 14 13 17 17 C 1.38322 * 120.12854 * 0.02562 * 16 15 14 18 18 C 1.38330 * 120.25450 * 0.27826 * 17 16 15 19 19 C 1.38010 * 120.12188 * 359.44320 * 18 17 16 20 20 C 1.39433 * 119.89446 * 0.24803 * 13 12 11 21 21 C 1.37837 * 119.94902 * 359.51762 * 20 13 12 22 22 H 0.96993 * 120.00524 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.97095 * 0.02562 * 11 10 9 24 24 H 1.07995 * 120.02907 * 179.97438 * 12 11 10 25 25 H 1.07997 * 120.06911 * 0.02562 * 15 14 13 26 26 H 1.08002 * 119.93520 * 180.02562 * 16 15 14 27 27 H 1.08002 * 119.87588 * 179.97438 * 17 16 15 28 28 H 1.08003 * 119.94336 * 179.69887 * 18 17 16 29 29 H 1.07996 * 120.06664 * 180.25669 * 19 18 17 30 30 H 1.08004 * 120.01938 * 179.75146 * 20 13 12 31 31 H 1.08001 * 119.96896 * 180.22927 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3683 -0.0016 10 6 2.0698 -3.5041 0.1045 11 6 3.4581 -3.4360 0.0917 12 6 4.2068 -4.5882 0.1988 13 6 3.5704 -5.8230 0.3207 14 6 4.3738 -7.0645 0.4355 15 6 3.7392 -8.2994 0.5579 16 6 4.4919 -9.4512 0.6650 17 6 5.8733 -9.3817 0.6515 18 6 6.5085 -8.1583 0.5365 19 6 5.7661 -7.0004 0.4230 20 6 2.1777 -5.8892 0.3287 21 6 1.4332 -4.7336 0.2261 22 1 -0.4850 0.8399 0.0004 23 1 3.9505 -2.4793 -0.0024 24 1 5.2854 -4.5348 0.1883 25 1 2.6607 -8.3549 0.5690 26 1 4.0013 -10.4088 0.7595 27 1 6.4583 -10.2857 0.7359 28 1 7.5874 -8.1094 0.5314 29 1 6.2629 -6.0461 0.3291 30 1 1.6826 -6.8448 0.4189 31 1 0.3544 -4.7842 0.2360 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001772370.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:01 Heat of formation + Delta-G solvation = 18.100851 kcal Electronic energy + Delta-G solvation = -15439.352033 eV Core-core repulsion = 12844.098761 eV Total energy + Delta-G solvation = -2595.253272 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.49215 -38.51599 -36.36291 -32.53477 -31.48076 -31.10245 -30.01071 -27.64494 -25.44729 -23.05580 -22.70734 -21.07688 -20.34741 -18.08430 -17.47962 -16.47185 -15.53480 -14.89707 -14.61753 -14.04538 -13.86598 -13.73514 -13.54442 -13.42698 -12.80250 -12.73675 -12.39434 -11.77277 -11.48513 -11.41226 -11.13246 -10.98530 -10.66695 -10.53979 -10.39714 -9.39992 -9.16625 -8.78843 -8.63066 -8.28955 -6.98238 -6.54839 -4.11535 1.20000 1.57604 2.17273 2.52505 3.08371 3.09281 3.14102 3.89401 4.00963 4.63567 4.98913 5.02347 5.06250 5.09380 5.14749 5.33725 5.56428 5.64844 5.67036 5.69935 6.05857 6.16343 6.20924 6.28513 6.51966 6.63537 6.67578 6.70172 6.85328 6.98752 7.12418 7.26830 7.32492 7.37431 7.72415 7.90227 8.90301 9.58645 10.62500 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.054234 B = 0.004628 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.157143 B = 6049.214435 C = 6551.329684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.159 3.841 11 C -0.236 4.236 12 C -0.053 4.053 13 C -0.163 4.163 14 C 0.001 3.999 15 C -0.133 4.133 16 C -0.114 4.114 17 C -0.147 4.147 18 C -0.114 4.114 19 C -0.133 4.133 20 C -0.057 4.057 21 C -0.193 4.193 22 H 0.272 0.728 23 H 0.130 0.870 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -11.818 0.924 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.072 6.072 10 C 0.104 3.896 11 C -0.255 4.255 12 C -0.071 4.071 13 C -0.164 4.164 14 C 0.001 3.999 15 C -0.151 4.151 16 C -0.132 4.132 17 C -0.165 4.165 18 C -0.132 4.132 19 C -0.151 4.151 20 C -0.075 4.075 21 C -0.213 4.213 22 H 0.082 0.918 23 H 0.147 0.853 24 H 0.129 0.871 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.392 -11.567 0.904 14.319 hybrid contribution 0.508 0.821 -0.011 0.966 sum 8.900 -10.746 0.893 13.982 Atomic orbital electron populations 1.70036 1.06040 1.27963 1.45125 1.25336 0.95875 0.98985 0.96282 0.85680 0.78965 0.79809 0.78827 1.19752 1.20135 1.19070 1.21398 0.91962 0.80719 1.52789 0.88810 1.83955 1.34628 1.11603 1.77052 1.19493 0.90307 0.87987 0.91776 1.21104 0.93722 0.98936 1.11721 1.20830 0.98481 0.91469 0.96289 1.18256 0.92710 0.91607 1.13807 1.18877 0.92723 0.92584 0.95677 1.21216 0.99912 0.91885 1.02073 1.21010 0.94048 0.97962 1.00203 1.21025 0.94674 0.97445 1.03384 1.21013 0.99411 0.92651 1.00146 1.21220 0.93384 0.98390 1.02095 1.20718 0.92617 0.96901 0.97259 1.20154 0.99685 0.90158 1.11269 0.91810 0.85265 0.87067 0.86021 0.86539 0.86774 0.86551 0.86065 0.86637 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.39 -10.77 9.48 30.88 0.29 -10.48 16 8 H 0.09 2.37 5.19 -52.49 -0.27 2.10 16 9 O -0.17 -4.78 9.75 0.24 0.00 -4.78 16 10 C 0.16 3.81 6.65 -39.02 -0.26 3.55 16 11 C -0.24 -5.07 9.15 -39.45 -0.36 -5.44 16 12 C -0.05 -0.98 9.42 -39.28 -0.37 -1.35 16 13 C -0.16 -2.94 5.88 -104.85 -0.62 -3.56 16 14 C 0.00 0.02 5.88 -104.90 -0.62 -0.59 16 15 C -0.13 -1.87 9.43 -39.24 -0.37 -2.24 16 16 C -0.11 -1.39 10.03 -39.63 -0.40 -1.79 16 17 C -0.15 -1.72 10.04 -39.52 -0.40 -2.12 16 18 C -0.11 -1.40 10.03 -39.63 -0.40 -1.80 16 19 C -0.13 -1.89 9.43 -39.24 -0.37 -2.26 16 20 C -0.06 -1.03 9.42 -39.28 -0.37 -1.40 16 21 C -0.19 -4.06 9.98 -39.45 -0.39 -4.45 16 22 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.13 2.75 5.62 -52.49 -0.30 2.46 16 24 H 0.11 1.76 6.20 -52.49 -0.33 1.43 16 25 H 0.12 1.55 6.20 -52.49 -0.33 1.22 16 26 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 28 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.12 1.59 6.20 -52.49 -0.33 1.26 16 30 H 0.12 1.74 6.20 -52.48 -0.33 1.42 16 31 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 270.76 15.07 4.08 4.08 Total: -1.00 -29.85 270.76 -7.60 -37.45 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -2.70 Total: 5.07 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: -4.72 Total: -32.94 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.76 Total: -23.93 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: 0.00 Total: -4.78 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.85 -7.60 -37.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001772370.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.555 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds