Wall clock time and date at job start Thu Apr 9 2020 12:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00267 * 2 1 4 4 H 1.48505 * 109.46990 * 270.00138 * 3 2 1 5 5 H 1.48505 * 109.47085 * 29.99285 * 3 2 1 6 6 H 1.48495 * 109.47479 * 149.99549 * 3 2 1 7 7 C 1.38655 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99580 * 359.97438 * 7 2 1 9 9 O 1.34815 * 119.99903 * 180.02562 * 7 2 1 10 10 C 1.35657 * 116.99695 * 185.05456 * 9 7 2 11 11 C 1.38763 * 120.14126 * 354.40042 * 10 9 7 12 12 C 1.38109 * 120.05227 * 180.30168 * 11 10 9 13 13 C 1.38444 * 120.32351 * 359.71556 * 12 11 10 14 14 C 1.38011 * 120.27254 * 0.02562 * 13 12 11 15 15 C 1.39293 * 119.94495 * 359.97438 * 14 13 12 16 16 C 1.48284 * 120.16027 * 180.02562 * 15 14 13 17 17 C 1.39400 * 120.12317 * 129.72510 * 16 15 14 18 18 C 1.38004 * 119.86849 * 179.81297 * 17 16 15 19 19 C 1.38339 * 120.12809 * 0.44218 * 18 17 16 20 20 C 1.38334 * 120.24986 * 359.79385 * 19 18 17 21 21 C 1.38001 * 120.13131 * 359.97438 * 20 19 18 22 22 H 0.97007 * 119.99888 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.97038 * 0.02562 * 11 10 9 24 24 H 1.07995 * 119.83495 * 179.73335 * 12 11 10 25 25 H 1.08001 * 119.86612 * 180.02562 * 13 12 11 26 26 H 1.08001 * 120.03028 * 179.97438 * 14 13 12 27 27 H 1.07991 * 120.06408 * 0.02562 * 17 16 15 28 28 H 1.08001 * 119.93527 * 180.18697 * 18 17 16 29 29 H 1.07991 * 119.87495 * 179.76121 * 19 18 17 30 30 H 1.08001 * 119.93300 * 179.97438 * 20 19 18 31 31 H 1.08000 * 120.06365 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1361 0.0014 9 8 3.3570 -1.2008 0.0011 10 6 3.9728 -2.4049 -0.1049 11 6 3.2250 -3.5736 -0.0908 12 6 3.8544 -4.7988 -0.1925 13 6 5.2316 -4.8690 -0.3150 14 6 5.9880 -3.7148 -0.3359 15 6 5.3648 -2.4732 -0.2340 16 6 6.1728 -1.2300 -0.2565 17 6 5.8311 -0.1891 -1.1184 18 6 6.5845 0.9671 -1.1322 19 6 7.6823 1.0906 -0.2996 20 6 8.0289 0.0588 0.5542 21 6 7.2802 -1.1001 0.5801 22 1 -0.4850 0.8401 -0.0004 23 1 2.1502 -3.5254 0.0044 24 1 3.2693 -5.7063 -0.1768 25 1 5.7161 -5.8309 -0.3944 26 1 7.0621 -3.7742 -0.4311 27 1 4.9765 -0.2858 -1.7714 28 1 6.3189 1.7755 -1.7974 29 1 8.2712 1.9956 -0.3166 30 1 8.8873 0.1605 1.2017 31 1 7.5515 -1.9048 1.2474 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011834396.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:10 Heat of formation + Delta-G solvation = 20.550297 kcal Electronic energy + Delta-G solvation = -16247.628993 eV Core-core repulsion = 13652.481937 eV Total energy + Delta-G solvation = -2595.147056 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.57989 -38.18422 -36.50386 -32.51577 -32.06027 -30.52728 -29.32297 -28.23105 -25.30228 -22.98262 -22.25103 -21.08080 -20.49108 -17.89294 -17.46797 -16.37223 -15.28088 -14.94444 -14.58630 -14.27393 -13.84533 -13.72230 -13.65320 -12.99134 -12.76852 -12.44038 -12.23657 -12.21121 -11.45266 -11.33702 -10.86045 -10.84356 -10.62190 -10.58249 -10.16607 -9.43146 -8.94012 -8.77660 -8.52567 -7.92773 -7.29484 -6.46341 -4.12289 1.47289 1.81959 2.20476 2.28504 3.19833 3.23569 3.41999 4.16843 4.21378 4.49063 4.78331 5.04989 5.17655 5.28518 5.32753 5.50529 5.55302 5.72679 5.85352 5.92723 5.98903 6.17723 6.34841 6.44828 6.48406 6.62424 6.84491 6.89609 6.93891 7.09450 7.18127 7.26920 7.42387 7.55873 7.74913 7.98499 8.88966 9.51012 10.60888 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.012229 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.791045 B = 2289.080346 C = 3836.659048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.204 6.204 10 C 0.172 3.828 11 C -0.222 4.222 12 C -0.071 4.071 13 C -0.207 4.207 14 C -0.062 4.062 15 C -0.135 4.135 16 C -0.010 4.010 17 C -0.094 4.094 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.126 4.126 21 C -0.118 4.118 22 H 0.280 0.720 23 H 0.135 0.865 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.264 -2.014 -0.759 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.108 6.108 10 C 0.119 3.881 11 C -0.241 4.241 12 C -0.089 4.089 13 C -0.226 4.226 14 C -0.081 4.081 15 C -0.136 4.136 16 C -0.010 4.010 17 C -0.112 4.112 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.144 4.144 21 C -0.136 4.136 22 H 0.090 0.910 23 H 0.153 0.847 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.125 -1.629 -0.731 12.255 hybrid contribution -0.045 0.652 0.046 0.655 sum 12.079 -0.977 -0.685 12.138 Atomic orbital electron populations 1.69642 1.05582 1.28561 1.47615 1.24431 0.94965 0.98747 0.95504 0.86311 0.80826 0.81556 0.79249 1.19691 1.20822 1.17670 1.20790 0.76918 0.96646 1.52279 0.87568 1.83593 1.22431 1.25395 1.79424 1.19059 0.90607 0.85720 0.92717 1.21248 1.01178 0.91767 1.09874 1.20875 0.94358 0.96720 0.96993 1.20593 0.93997 0.97299 1.10710 1.20716 0.98522 0.90868 0.97951 1.17905 0.90018 0.92470 1.13247 1.18666 0.93887 0.93356 0.95098 1.21307 0.98786 0.92818 0.98337 1.21059 0.95784 0.97616 0.99671 1.21044 0.97893 0.98741 0.97521 1.20950 0.99937 0.94010 0.99483 1.21184 0.95471 0.97896 0.99012 0.90991 0.84740 0.87121 0.87247 0.86724 0.85835 0.86520 0.86751 0.86589 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.14 13.96 55.48 0.77 -24.37 16 2 C 0.07 1.88 5.49 -17.52 -0.10 1.78 16 3 Si 0.90 21.65 28.62 -169.99 -4.86 16.78 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.25 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.39 -10.85 9.95 30.89 0.31 -10.54 16 8 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 9 O -0.20 -5.29 6.98 0.38 0.00 -5.29 16 10 C 0.17 3.96 6.56 -38.74 -0.25 3.70 16 11 C -0.22 -4.74 9.16 -39.43 -0.36 -5.10 16 12 C -0.07 -1.27 10.03 -39.55 -0.40 -1.67 16 13 C -0.21 -3.43 10.03 -39.59 -0.40 -3.82 16 14 C -0.06 -1.08 9.51 -39.27 -0.37 -1.45 16 15 C -0.14 -2.73 5.49 -104.73 -0.57 -3.30 16 16 C -0.01 -0.19 5.27 -104.90 -0.55 -0.75 16 17 C -0.09 -1.83 8.80 -39.23 -0.35 -2.18 16 18 C -0.12 -2.07 10.03 -39.63 -0.40 -2.47 16 19 C -0.13 -2.00 10.04 -39.51 -0.40 -2.39 16 20 C -0.13 -1.85 10.03 -39.63 -0.40 -2.25 16 21 C -0.12 -1.95 9.51 -39.24 -0.37 -2.32 16 22 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.14 3.00 5.64 -52.48 -0.30 2.70 16 24 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 25 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.11 1.67 8.04 -52.49 -0.42 1.25 16 27 H 0.12 2.53 7.73 -52.49 -0.41 2.12 16 28 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -29.22 274.28 -7.64 -36.86 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.08 Total: 4.63 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -4.61 Total: -32.76 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.77 Total: -24.37 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.78 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.22 -7.64 -36.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011834396.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.410 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds