Wall clock time and date at job start Thu Apr 9 2020 12:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86793 * 120.00383 * 2 1 4 4 H 1.48499 * 109.46994 * 239.99418 * 3 2 1 5 5 H 1.48492 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47069 * 119.99848 * 3 2 1 7 7 C 1.38761 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00519 * 180.02562 * 7 2 1 9 9 O 1.34920 * 119.99569 * 359.97438 * 7 2 1 10 10 C 1.34317 * 117.00016 * 180.02562 * 9 7 2 11 11 O 1.21213 * 119.99478 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00563 * 180.02562 * 10 9 7 13 13 C 1.50693 * 109.64104 * 294.81532 * 12 10 9 14 14 O 1.20822 * 120.00418 * 119.57551 * 13 12 10 15 15 O 1.34233 * 119.99998 * 299.57550 * 13 12 10 16 16 C 1.53022 * 109.64548 * 174.39262 * 12 10 9 17 17 C 1.50075 * 110.14462 * 289.75338 * 16 12 10 18 18 C 1.29437 * 124.07491 * 343.12750 * 17 16 12 19 19 C 1.50068 * 124.08079 * 359.95229 * 18 17 16 20 20 C 1.53021 * 110.19878 * 343.32190 * 19 18 17 21 21 H 0.97001 * 119.99562 * 0.02562 * 1 2 3 22 22 H 0.96693 * 117.00330 * 179.97438 * 15 13 12 23 23 H 1.09001 * 109.36052 * 169.54694 * 16 12 10 24 24 H 1.08996 * 109.24357 * 49.88538 * 16 12 10 25 25 H 1.08001 * 117.95637 * 162.84592 * 17 16 12 26 26 H 1.08003 * 117.95684 * 180.18797 * 18 17 16 27 27 H 1.08999 * 109.48403 * 222.99983 * 19 18 17 28 28 H 1.09001 * 109.17515 * 103.44499 * 19 18 17 29 29 H 1.08999 * 109.64351 * 289.56222 * 20 19 18 30 30 H 1.08995 * 109.81768 * 169.02990 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 3.1023 1.6961 -1.2124 5 1 1.2836 2.7464 -0.0006 6 1 3.1022 1.6962 1.2125 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2019 0.0010 9 8 1.3334 -2.3701 0.0016 10 6 2.0648 -3.4967 0.0026 11 8 3.2752 -3.4333 0.0030 12 6 1.3806 -4.8393 0.0032 13 6 0.6194 -5.0194 1.2912 14 8 -0.5774 -5.1833 1.2679 15 8 1.2710 -4.9976 2.4646 16 6 2.4250 -5.9490 -0.1365 17 6 3.0083 -5.9386 -1.5192 18 6 2.4690 -5.3351 -2.5293 19 6 1.1845 -4.5624 -2.4594 20 6 0.4169 -4.9275 -1.1870 21 1 -0.4849 0.8401 -0.0004 22 1 0.7402 -5.1170 3.2639 23 1 1.9538 -6.9142 0.0496 24 1 3.2196 -5.7883 0.5921 25 1 3.9383 -6.4637 -1.6803 26 1 2.9730 -5.3945 -3.4827 27 1 0.5721 -4.7956 -3.3304 28 1 1.4083 -3.4956 -2.4528 29 1 0.0303 -5.9432 -1.2710 30 1 -0.4095 -4.2318 -1.0416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610151.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:45 Heat of formation + Delta-G solvation = -158.371047 kcal Electronic energy + Delta-G solvation = -17949.484994 eV Core-core repulsion = 14903.437312 eV Total energy + Delta-G solvation = -3046.047682 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76995 -38.99205 -37.33965 -35.84615 -35.00096 -32.23370 -31.43427 -30.48955 -25.77995 -24.45935 -22.92256 -22.10279 -19.92427 -18.02214 -17.68202 -17.56385 -16.92944 -15.91997 -15.31909 -14.99999 -14.61392 -14.34904 -13.81425 -13.40512 -13.10248 -12.81649 -12.61161 -12.37071 -11.96673 -11.64492 -11.24358 -11.20837 -11.07794 -10.70354 -10.50385 -10.48013 -10.26737 -10.01585 -9.77149 -9.02500 -8.67070 -8.58201 -6.43481 -4.12035 2.41025 2.64299 3.01200 3.17001 3.19944 3.21244 3.59977 3.84534 4.38045 4.77751 4.87397 5.12737 5.30024 5.49053 5.55574 5.60016 5.78390 5.79800 5.98633 6.15842 6.26519 6.40493 6.55617 6.67439 6.77383 6.93138 7.24862 7.35573 7.90532 8.15798 8.63077 9.04075 9.78257 10.73626 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.009217 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.721548 B = 3037.104302 C = 3417.029877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.383 4.383 8 H 0.096 0.904 9 O -0.207 6.207 10 C 0.413 3.587 11 O -0.532 6.532 12 C -0.033 4.033 13 C 0.501 3.499 14 O -0.505 6.505 15 O -0.507 6.507 16 C -0.064 4.064 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.096 4.096 20 C -0.094 4.094 21 H 0.271 0.729 22 H 0.408 0.592 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -9.780 -1.037 9.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.161 4.161 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.460 4.460 8 H 0.114 0.886 9 O -0.113 6.113 10 C 0.258 3.742 11 O -0.428 6.428 12 C -0.035 4.035 13 C 0.342 3.658 14 O -0.392 6.392 15 O -0.318 6.318 16 C -0.101 4.101 17 C -0.161 4.161 18 C -0.171 4.171 19 C -0.133 4.133 20 C -0.131 4.131 21 H 0.081 0.919 22 H 0.266 0.734 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.778 -9.574 -1.403 9.839 hybrid contribution 0.104 0.785 0.580 0.981 sum 1.882 -8.790 -0.823 9.026 Atomic orbital electron populations 1.69995 1.05985 1.27892 1.45808 1.25344 0.95807 0.98838 0.96080 0.85747 0.78661 0.79401 0.79409 1.19401 1.20339 1.19433 1.21195 0.92372 0.79618 1.52765 0.88598 1.83886 1.39145 1.13153 1.75157 1.22051 0.86413 0.85988 0.79749 1.90566 1.14912 1.87257 1.50057 1.20346 0.97238 0.94714 0.91248 1.22825 0.86132 0.71677 0.85140 1.90684 1.15737 1.45087 1.87675 1.84582 1.45846 1.84448 1.16931 1.20312 0.97084 0.95241 0.97477 1.21721 0.99619 1.01272 0.93482 1.22001 0.97741 0.98672 0.98696 1.20521 0.94299 1.01184 0.97315 1.21532 0.97070 1.03391 0.91123 0.91928 0.73410 0.90155 0.88726 0.87482 0.87830 0.90263 0.89563 0.90544 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 2 C 0.04 1.24 5.49 -17.53 -0.10 1.14 16 3 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.38 -11.28 9.65 30.93 0.30 -10.98 16 8 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 9 O -0.21 -5.91 9.58 -20.72 -0.20 -6.11 16 10 C 0.41 10.23 4.67 36.00 0.17 10.40 16 11 O -0.53 -14.03 14.54 -19.05 -0.28 -14.30 16 12 C -0.03 -0.65 0.68 -156.60 -0.11 -0.75 16 13 C 0.50 9.65 6.90 36.00 0.25 9.90 16 14 O -0.50 -10.38 16.67 -18.75 -0.31 -10.69 16 15 O -0.51 -8.41 13.28 -39.27 -0.52 -8.93 16 16 C -0.06 -1.05 4.48 -28.17 -0.13 -1.17 16 17 C -0.14 -2.23 9.06 -35.89 -0.33 -2.55 16 18 C -0.15 -2.42 9.61 -35.90 -0.34 -2.76 16 19 C -0.10 -1.64 5.59 -28.18 -0.16 -1.80 16 20 C -0.09 -1.68 4.23 -26.51 -0.11 -1.80 16 21 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.41 4.52 9.10 45.56 0.41 4.93 16 23 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 24 H 0.09 1.61 7.67 -51.93 -0.40 1.21 16 25 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 26 H 0.10 1.41 8.06 -52.48 -0.42 0.98 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.76 7.40 -51.93 -0.38 1.37 16 29 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 30 H 0.09 1.84 7.89 -51.93 -0.41 1.43 16 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -34.33 266.68 -4.49 -38.82 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -2.38 Total: 5.79 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.55 Total: -0.37 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.76 Total: -24.44 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.31 Total: -40.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.33 -4.49 -38.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610151.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.551 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds