Wall clock time and date at job start Thu Apr 9 2020 12:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86793 * 120.00383 * 2 1 4 4 H 1.48499 * 109.46994 * 239.99418 * 3 2 1 5 5 H 1.48492 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47069 * 119.99848 * 3 2 1 7 7 C 1.38761 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00519 * 180.02562 * 7 2 1 9 9 O 1.34920 * 119.99569 * 359.97438 * 7 2 1 10 10 C 1.34317 * 117.00016 * 180.02562 * 9 7 2 11 11 O 1.21213 * 119.99478 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00563 * 180.02562 * 10 9 7 13 13 C 1.50693 * 109.64104 * 294.81532 * 12 10 9 14 14 O 1.20822 * 120.00418 * 119.57551 * 13 12 10 15 15 O 1.34233 * 119.99998 * 299.57550 * 13 12 10 16 16 C 1.53022 * 109.64548 * 174.39262 * 12 10 9 17 17 C 1.50075 * 110.14462 * 289.75338 * 16 12 10 18 18 C 1.29437 * 124.07491 * 343.12750 * 17 16 12 19 19 C 1.50068 * 124.08079 * 359.95229 * 18 17 16 20 20 C 1.53021 * 110.19878 * 343.32190 * 19 18 17 21 21 H 0.97001 * 119.99562 * 0.02562 * 1 2 3 22 22 H 0.96693 * 117.00330 * 179.97438 * 15 13 12 23 23 H 1.09001 * 109.36052 * 169.54694 * 16 12 10 24 24 H 1.08996 * 109.24357 * 49.88538 * 16 12 10 25 25 H 1.08001 * 117.95637 * 162.84592 * 17 16 12 26 26 H 1.08003 * 117.95684 * 180.18797 * 18 17 16 27 27 H 1.08999 * 109.48403 * 222.99983 * 19 18 17 28 28 H 1.09001 * 109.17515 * 103.44499 * 19 18 17 29 29 H 1.08999 * 109.64351 * 289.56222 * 20 19 18 30 30 H 1.08995 * 109.81768 * 169.02990 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 3.1023 1.6961 -1.2124 5 1 1.2836 2.7464 -0.0006 6 1 3.1022 1.6962 1.2125 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2019 0.0010 9 8 1.3334 -2.3701 0.0016 10 6 2.0648 -3.4967 0.0026 11 8 3.2752 -3.4333 0.0030 12 6 1.3806 -4.8393 0.0032 13 6 0.6194 -5.0194 1.2912 14 8 -0.5774 -5.1833 1.2679 15 8 1.2710 -4.9976 2.4646 16 6 2.4250 -5.9490 -0.1365 17 6 3.0083 -5.9386 -1.5192 18 6 2.4690 -5.3351 -2.5293 19 6 1.1845 -4.5624 -2.4594 20 6 0.4169 -4.9275 -1.1870 21 1 -0.4849 0.8401 -0.0004 22 1 0.7402 -5.1170 3.2639 23 1 1.9538 -6.9142 0.0496 24 1 3.2196 -5.7883 0.5921 25 1 3.9383 -6.4637 -1.6803 26 1 2.9730 -5.3945 -3.4827 27 1 0.5721 -4.7956 -3.3304 28 1 1.4083 -3.4956 -2.4528 29 1 0.0303 -5.9432 -1.2710 30 1 -0.4095 -4.2318 -1.0416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610151.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:45 Heat of formation + Delta-G solvation = -181.802733 kcal Electronic energy + Delta-G solvation = -17950.501068 eV Core-core repulsion = 14903.437312 eV Total energy + Delta-G solvation = -3047.063756 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.38435 -40.76050 -38.93291 -37.37917 -36.95313 -34.35963 -32.88981 -31.83173 -27.81536 -26.00979 -24.29605 -23.87828 -21.50530 -19.94314 -19.58766 -19.04680 -18.39953 -17.65821 -16.99037 -16.55734 -16.42279 -16.18058 -15.42747 -14.97719 -14.52094 -14.41887 -14.07882 -13.91785 -13.52836 -13.30935 -13.12542 -12.74048 -12.56459 -12.40750 -12.20457 -12.14569 -12.01236 -11.74710 -11.29291 -10.98771 -10.72609 -9.88942 -8.56093 -6.36672 0.83126 1.24947 1.32620 1.42382 1.48573 1.52314 1.96248 2.05476 2.55605 2.94655 3.35789 3.50159 3.95282 4.13787 4.20939 4.30938 4.41249 4.55100 4.63065 4.69230 4.86210 4.99085 5.07626 5.15368 5.19023 5.40385 5.70428 5.78582 6.02300 6.56445 6.80742 6.88079 7.69062 8.63822 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.009217 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.721548 B = 3037.104302 C = 3417.029877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.002 4.002 3 Si 1.016 2.984 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.420 4.420 8 H 0.085 0.915 9 O -0.238 6.238 10 C 0.417 3.583 11 O -0.552 6.552 12 C -0.037 4.037 13 C 0.502 3.498 14 O -0.521 6.521 15 O -0.505 6.505 16 C -0.063 4.063 17 C -0.147 4.147 18 C -0.166 4.166 19 C -0.095 4.095 20 C -0.092 4.092 21 H 0.279 0.721 22 H 0.431 0.569 23 H 0.118 0.882 24 H 0.087 0.913 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.110 0.890 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 -10.575 -1.236 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.203 4.203 3 Si 0.834 3.166 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.103 0.897 9 O -0.146 6.146 10 C 0.263 3.737 11 O -0.448 6.448 12 C -0.039 4.039 13 C 0.344 3.656 14 O -0.410 6.410 15 O -0.319 6.319 16 C -0.100 4.100 17 C -0.164 4.164 18 C -0.183 4.183 19 C -0.132 4.132 20 C -0.129 4.129 21 H 0.088 0.912 22 H 0.294 0.706 23 H 0.136 0.864 24 H 0.105 0.895 25 H 0.153 0.847 26 H 0.145 0.855 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.527 -10.396 -1.577 10.815 hybrid contribution -0.121 0.928 0.698 1.167 sum 2.406 -9.468 -0.880 9.809 Atomic orbital electron populations 1.70091 1.07727 1.29473 1.46476 1.26544 0.96819 1.02330 0.94576 0.84714 0.77644 0.74299 0.79932 1.18353 1.18493 1.18520 1.21411 0.92211 0.80865 1.55054 0.89744 1.83913 1.40195 1.14071 1.76411 1.23045 0.86443 0.86871 0.77329 1.90527 1.15982 1.87876 1.50387 1.20564 0.98467 0.92449 0.92420 1.22721 0.85778 0.71417 0.85694 1.90677 1.16249 1.46042 1.88029 1.84529 1.46211 1.83800 1.17376 1.20451 0.96107 0.95429 0.98001 1.22012 1.00408 1.01277 0.92737 1.22152 0.97302 0.98725 1.00168 1.20511 0.95845 0.98736 0.98129 1.21562 0.95934 1.04475 0.90944 0.91183 0.70635 0.86416 0.89459 0.84723 0.85478 0.87295 0.93980 0.87166 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.87 13.67 21.63 0.30 -53.57 16 2 C 0.00 -0.12 5.49 84.88 0.47 0.35 16 3 Si 1.02 43.50 29.55 68.60 2.03 45.53 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.42 -25.53 9.65 67.95 0.66 -24.87 16 8 H 0.08 5.16 6.86 -2.91 -0.02 5.14 16 9 O -0.24 -14.14 9.58 14.81 0.14 -14.00 16 10 C 0.42 21.07 4.67 71.23 0.33 21.41 16 11 O -0.55 -29.54 14.54 20.76 0.30 -29.24 16 12 C -0.04 -1.42 0.68 -53.54 -0.04 -1.46 16 13 C 0.50 18.98 6.90 71.23 0.49 19.47 16 14 O -0.52 -21.13 16.67 21.98 0.37 -20.76 16 15 O -0.51 -16.15 13.28 -51.45 -0.68 -16.83 16 16 C -0.06 -1.92 4.48 29.66 0.13 -1.79 16 17 C -0.15 -4.19 9.06 27.05 0.25 -3.94 16 18 C -0.17 -4.91 9.61 27.04 0.26 -4.65 16 19 C -0.10 -3.21 5.59 29.66 0.17 -3.04 16 20 C -0.09 -3.26 4.23 30.74 0.13 -3.13 16 21 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 22 H 0.43 8.87 9.10 -74.06 -0.67 8.20 16 23 H 0.12 2.70 8.10 -2.39 -0.02 2.68 16 24 H 0.09 2.80 7.67 -2.39 -0.02 2.79 16 25 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 26 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.04 1.78 7.40 -2.39 -0.02 1.77 16 29 H 0.11 3.14 8.12 -2.39 -0.02 3.12 16 30 H 0.06 2.55 7.89 -2.39 -0.02 2.53 16 Total: -1.00 -76.19 266.68 5.79 -70.40 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.50 Total: 20.13 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 2.84 Total: -1.64 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.30 Total: -53.57 kcal Atomic # 8 Polarization: -80.96 SS G_CDS: 0.13 Total: -80.84 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.19 5.79 -70.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610151.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.406 kcal (2) G-P(sol) polarization free energy of solvation -76.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds