Wall clock time and date at job start Thu Apr 9 2020 12:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86803 * 120.00050 * 2 1 4 4 H 1.48505 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47220 * 299.99877 * 3 2 1 6 6 H 1.48502 * 109.46952 * 60.00146 * 3 2 1 7 7 C 1.39042 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00299 * 188.91404 * 7 2 1 9 9 N 1.36878 * 119.99984 * 8.90811 * 7 2 1 10 10 C 1.46494 * 119.99661 * 22.14309 * 9 7 2 11 11 C 1.50701 * 109.47330 * 263.27481 * 10 9 7 12 12 O 1.20824 * 119.99339 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00195 * 180.02562 * 11 10 9 14 14 C 1.34779 * 120.00213 * 202.13612 * 9 7 2 15 15 O 1.21593 * 119.99847 * 4.80124 * 14 9 7 16 16 C 1.47741 * 119.99971 * 184.79641 * 14 9 7 17 17 N 1.34585 * 126.05646 * 174.06026 * 16 14 9 18 18 C 1.30868 * 107.27103 * 180.02562 * 17 16 14 19 19 N 1.34590 * 107.63866 * 0.02562 * 18 17 16 20 20 H 0.97002 * 125.74468 * 179.73341 * 19 18 17 21 21 N 1.28852 * 108.51447 * 359.97438 * 19 18 17 22 22 H 0.96994 * 119.99940 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47493 * 23.27823 * 10 9 7 24 24 H 1.09011 * 109.47058 * 143.27381 * 10 9 7 25 25 H 0.96698 * 116.99857 * 179.97438 * 13 11 10 26 26 H 1.07993 * 126.18343 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7077 1.3464 0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0088 -1.2041 -0.0005 8 1 3.0791 -1.2099 0.1444 9 7 1.3369 -2.3823 -0.1846 10 6 0.0299 -2.3844 -0.8463 11 6 -1.0601 -2.3845 0.1945 12 8 -0.7743 -2.3826 1.3684 13 8 -2.3482 -2.3868 -0.1827 14 6 1.8777 -3.5405 0.2427 15 8 2.9201 -3.5302 0.8686 16 6 1.2039 -4.8225 -0.0493 17 7 1.6869 -6.0500 0.2176 18 6 0.7951 -6.9159 -0.1918 19 7 -0.2363 -6.2245 -0.7110 20 1 -1.0401 -6.6087 -1.0948 21 7 0.0258 -4.9664 -0.6172 22 1 -0.4850 0.8400 -0.0004 23 1 -0.0632 -1.4951 -1.4697 24 1 -0.0613 -3.2751 -1.4680 25 1 -3.0117 -2.3872 0.5208 26 1 0.8731 -7.9910 -0.1258 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071443.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:59 Heat of formation + Delta-G solvation = -8.183818 kcal Electronic energy + Delta-G solvation = -17662.397279 eV Core-core repulsion = 14551.614612 eV Total energy + Delta-G solvation = -3110.782668 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.98022 -39.21954 -37.90227 -35.18191 -34.44941 -32.89924 -32.07205 -30.72303 -27.60199 -25.57012 -23.18988 -22.42691 -20.98303 -19.54946 -18.09981 -17.12976 -16.87809 -16.38942 -15.93770 -15.32937 -14.80429 -14.40190 -14.35213 -13.89691 -13.16400 -12.74937 -12.21908 -11.83789 -11.57211 -11.19944 -10.85637 -10.44101 -10.36917 -10.31495 -10.24054 -9.87537 -9.55378 -9.23486 -9.01751 -8.79461 -7.91361 -6.47604 -3.98918 1.87968 2.68284 3.01264 3.17982 3.24341 3.31010 3.68884 3.85547 4.14159 4.35346 4.46583 4.91091 4.96352 5.13043 5.46385 6.20600 6.48571 6.58989 6.73400 6.77380 7.08846 7.46374 7.62375 7.93125 8.27917 8.50568 9.01102 9.13393 9.27671 9.78615 10.59029 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.030836 B = 0.010146 C = 0.008165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.814862 B = 2759.170936 C = 3428.485691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.031 3.969 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.295 4.295 8 H 0.111 0.889 9 N -0.408 5.408 10 C 0.138 3.862 11 C 0.508 3.492 12 O -0.517 6.517 13 O -0.533 6.533 14 C 0.536 3.464 15 O -0.550 6.550 16 C 0.187 3.813 17 N -0.470 5.470 18 C 0.182 3.818 19 N -0.414 5.414 20 H 0.444 0.556 21 N -0.298 5.298 22 H 0.273 0.727 23 H 0.130 0.870 24 H 0.101 0.899 25 H 0.388 0.612 26 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 -8.646 -5.722 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.172 4.172 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.423 4.423 8 H 0.128 0.872 9 N -0.127 5.127 10 C 0.012 3.988 11 C 0.349 3.651 12 O -0.403 6.403 13 O -0.344 6.344 14 C 0.322 3.678 15 O -0.429 6.429 16 C -0.094 4.094 17 N -0.195 5.195 18 C -0.116 4.116 19 N -0.135 5.135 20 H 0.289 0.711 21 N -0.138 5.138 22 H 0.084 0.916 23 H 0.147 0.853 24 H 0.118 0.882 25 H 0.243 0.757 26 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.490 -7.949 -5.356 11.046 hybrid contribution -1.022 0.225 0.382 1.114 sum -6.512 -7.724 -4.974 11.261 Atomic orbital electron populations 1.69668 1.06214 1.28093 1.48277 1.25413 0.95608 1.00257 0.95960 0.85620 0.79714 0.80146 0.77793 1.18912 1.20472 1.20610 1.19871 0.93595 0.81305 1.47512 0.87169 1.43151 1.15234 1.05468 1.48849 1.21016 0.80408 1.04852 0.92529 1.23511 0.81681 0.69562 0.90311 1.90593 1.82953 1.46273 1.20462 1.84515 1.18195 1.87256 1.44384 1.16282 0.86901 0.80583 0.84077 1.90661 1.24613 1.85358 1.42314 1.24555 0.89674 0.95386 0.99769 1.71306 1.28256 0.98904 1.21030 1.26604 0.85515 1.00917 0.98566 1.45210 1.19010 1.04338 1.44976 0.71132 1.74576 1.18593 0.98566 1.22057 0.91610 0.85255 0.88171 0.75680 0.76138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.34 8.84 55.50 0.49 -22.84 15 2 C 0.03 0.81 5.14 -17.46 -0.09 0.72 15 3 Si 0.94 20.61 29.56 -169.99 -5.03 15.58 15 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.29 -8.27 9.28 -15.00 -0.14 -8.41 15 8 H 0.11 3.16 7.43 -52.48 -0.39 2.77 15 9 N -0.41 -10.98 2.18 -117.20 -0.26 -11.24 15 10 C 0.14 3.26 4.78 -5.20 -0.02 3.23 15 11 C 0.51 12.09 5.58 36.01 0.20 12.29 15 12 O -0.52 -14.41 16.78 -18.75 -0.31 -14.73 15 13 O -0.53 -10.24 13.42 -39.25 -0.53 -10.77 15 14 C 0.54 14.70 7.38 -12.38 -0.09 14.61 15 15 O -0.55 -16.77 16.82 5.28 0.09 -16.68 15 16 C 0.19 4.26 7.66 -156.32 -1.20 3.06 15 17 N -0.47 -9.53 11.41 -12.38 -0.14 -9.67 15 18 C 0.18 2.41 13.14 -90.48 -1.19 1.22 15 19 N -0.41 -5.32 6.93 29.56 0.20 -5.11 15 20 H 0.44 3.35 8.96 -190.21 -1.71 1.64 15 21 N -0.30 -5.58 8.11 32.06 0.26 -5.32 15 22 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 23 H 0.13 3.10 6.32 -51.93 -0.33 2.77 15 24 H 0.10 2.11 5.30 -51.92 -0.28 1.83 15 25 H 0.39 5.82 9.10 45.56 0.41 6.23 15 26 H 0.22 1.52 8.06 -52.49 -0.42 1.10 15 LS Contribution 241.82 15.07 3.64 3.64 Total: -1.00 -38.27 241.82 -5.95 -44.21 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -1.84 Total: 6.20 kcal Atomic # 6 Polarization: 29.26 SS G_CDS: -2.53 Total: 26.73 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.56 Total: -54.19 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.75 Total: -42.17 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -38.27 -5.95 -44.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071443.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.027 kcal (2) G-P(sol) polarization free energy of solvation -38.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds