Wall clock time and date at job start Thu Apr 9 2020 12:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86803 * 120.00050 * 2 1 4 4 H 1.48505 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47220 * 299.99877 * 3 2 1 6 6 H 1.48502 * 109.46952 * 60.00146 * 3 2 1 7 7 C 1.39042 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00299 * 188.91404 * 7 2 1 9 9 N 1.36878 * 119.99984 * 8.90811 * 7 2 1 10 10 C 1.46494 * 119.99661 * 22.14309 * 9 7 2 11 11 C 1.50701 * 109.47330 * 263.27481 * 10 9 7 12 12 O 1.20824 * 119.99339 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00195 * 180.02562 * 11 10 9 14 14 C 1.34779 * 120.00213 * 202.13612 * 9 7 2 15 15 O 1.21593 * 119.99847 * 4.80124 * 14 9 7 16 16 C 1.47741 * 119.99971 * 184.79641 * 14 9 7 17 17 N 1.34585 * 126.05646 * 174.06026 * 16 14 9 18 18 C 1.30868 * 107.27103 * 180.02562 * 17 16 14 19 19 N 1.34590 * 107.63866 * 0.02562 * 18 17 16 20 20 H 0.97002 * 125.74468 * 179.73341 * 19 18 17 21 21 N 1.28852 * 108.51447 * 359.97438 * 19 18 17 22 22 H 0.96994 * 119.99940 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47493 * 23.27823 * 10 9 7 24 24 H 1.09011 * 109.47058 * 143.27381 * 10 9 7 25 25 H 0.96698 * 116.99857 * 179.97438 * 13 11 10 26 26 H 1.07993 * 126.18343 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7077 1.3464 0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0088 -1.2041 -0.0005 8 1 3.0791 -1.2099 0.1444 9 7 1.3369 -2.3823 -0.1846 10 6 0.0299 -2.3844 -0.8463 11 6 -1.0601 -2.3845 0.1945 12 8 -0.7743 -2.3826 1.3684 13 8 -2.3482 -2.3868 -0.1827 14 6 1.8777 -3.5405 0.2427 15 8 2.9201 -3.5302 0.8686 16 6 1.2039 -4.8225 -0.0493 17 7 1.6869 -6.0500 0.2176 18 6 0.7951 -6.9159 -0.1918 19 7 -0.2363 -6.2245 -0.7110 20 1 -1.0401 -6.6087 -1.0948 21 7 0.0258 -4.9664 -0.6172 22 1 -0.4850 0.8400 -0.0004 23 1 -0.0632 -1.4951 -1.4697 24 1 -0.0613 -3.2751 -1.4680 25 1 -3.0117 -2.3872 0.5208 26 1 0.8731 -7.9910 -0.1258 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071443.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:59 Heat of formation + Delta-G solvation = -38.672044 kcal Electronic energy + Delta-G solvation = -17663.719348 eV Core-core repulsion = 14551.614612 eV Total energy + Delta-G solvation = -3112.104736 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.34357 -41.11487 -39.84729 -37.08900 -36.38719 -34.30444 -34.00039 -32.24345 -29.51690 -27.49709 -24.89683 -23.71341 -22.80869 -21.20007 -19.49616 -19.06944 -18.71120 -18.20074 -17.56101 -16.97388 -16.67461 -16.20653 -15.96775 -15.52009 -15.11929 -14.68183 -13.82752 -13.70594 -13.46611 -12.91764 -12.67430 -12.32634 -12.12557 -12.08744 -11.67520 -11.55850 -11.34580 -11.00906 -10.88098 -10.59950 -9.93422 -8.47933 -6.09251 0.39940 1.26163 1.42561 1.48580 1.58334 1.82385 1.88862 2.16976 2.34311 2.56964 2.74375 3.11819 3.41781 3.66419 4.10781 4.49157 4.79123 4.92084 4.98881 5.36496 5.42932 5.89615 5.95461 6.12069 6.32420 6.94938 7.08154 7.21647 7.46893 7.77683 8.57435 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.030836 B = 0.010146 C = 0.008165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.814862 B = 2759.170936 C = 3428.485691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.000 4.000 3 Si 1.008 2.992 4 H -0.269 1.269 5 H -0.256 1.256 6 H -0.281 1.281 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.417 5.417 10 C 0.141 3.859 11 C 0.518 3.482 12 O -0.563 6.563 13 O -0.515 6.515 14 C 0.520 3.480 15 O -0.605 6.605 16 C 0.149 3.851 17 N -0.522 5.522 18 C 0.219 3.781 19 N -0.386 5.386 20 H 0.471 0.529 21 N -0.296 5.296 22 H 0.280 0.720 23 H 0.124 0.876 24 H 0.126 0.874 25 H 0.410 0.590 26 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 -9.791 -6.873 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.201 4.201 3 Si 0.830 3.170 4 H -0.193 1.193 5 H -0.180 1.180 6 H -0.207 1.207 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.135 5.135 10 C 0.015 3.985 11 C 0.361 3.639 12 O -0.453 6.453 13 O -0.326 6.326 14 C 0.307 3.693 15 O -0.488 6.488 16 C -0.130 4.130 17 N -0.248 5.248 18 C -0.078 4.078 19 N -0.111 5.111 20 H 0.322 0.678 21 N -0.139 5.139 22 H 0.090 0.910 23 H 0.141 0.859 24 H 0.143 0.857 25 H 0.269 0.731 26 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -7.502 -9.117 -6.564 13.509 hybrid contribution -0.611 0.405 0.698 1.012 sum -8.113 -8.712 -5.866 13.272 Atomic orbital electron populations 1.69733 1.07039 1.29187 1.47326 1.26246 0.96556 1.02812 0.94517 0.84670 0.78127 0.75806 0.78410 1.19342 1.18010 1.20654 1.19880 0.93226 0.82938 1.50543 0.89549 1.43308 1.16219 1.05253 1.48758 1.21097 0.79260 1.05678 0.92438 1.23404 0.82819 0.68296 0.89335 1.90582 1.83935 1.48575 1.22237 1.84432 1.16937 1.86294 1.44951 1.16934 0.86625 0.82331 0.83381 1.90581 1.26866 1.86696 1.44675 1.23627 0.91330 0.94575 1.03513 1.71197 1.31284 0.98873 1.23424 1.27708 0.83042 1.02513 0.94549 1.45167 1.19942 1.02528 1.43431 0.67797 1.74316 1.16868 1.01617 1.21091 0.91018 0.85884 0.85698 0.73074 0.69466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.25 8.84 21.68 0.19 -47.06 15 2 C 0.00 0.03 5.14 84.96 0.44 0.46 15 3 Si 1.01 42.58 29.56 68.60 2.03 44.61 15 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 15 5 H -0.26 -9.82 7.11 99.48 0.71 -9.12 15 6 H -0.28 -11.85 7.11 99.48 0.71 -11.15 15 7 C -0.34 -19.83 9.28 84.10 0.78 -19.05 15 8 H 0.09 5.32 7.43 -2.91 -0.02 5.30 15 9 N -0.42 -23.33 2.18 -642.98 -1.40 -24.73 15 10 C 0.14 6.66 4.78 85.63 0.41 7.07 15 11 C 0.52 24.37 5.58 71.24 0.40 24.77 15 12 O -0.56 -31.71 16.78 21.97 0.37 -31.35 15 13 O -0.51 -18.62 13.42 -51.38 -0.69 -19.31 15 14 C 0.52 29.82 7.38 86.76 0.64 30.46 15 15 O -0.60 -39.25 16.82 -4.01 -0.07 -39.32 15 16 C 0.15 6.84 7.66 137.06 1.05 7.89 15 17 N -0.52 -20.59 11.41 -193.09 -2.20 -22.79 15 18 C 0.22 4.88 13.14 180.30 2.37 7.25 15 19 N -0.39 -8.39 6.93 -60.38 -0.42 -8.81 15 20 H 0.47 4.70 8.96 -219.79 -1.97 2.73 15 21 N -0.30 -10.58 8.11 -52.48 -0.43 -11.01 15 22 H 0.28 13.76 8.31 -92.71 -0.77 12.99 15 23 H 0.12 5.92 6.32 -2.39 -0.02 5.91 15 24 H 0.13 5.18 5.30 -2.38 -0.01 5.17 15 25 H 0.41 11.21 9.10 -74.06 -0.67 10.53 15 26 H 0.29 2.01 8.06 -2.91 -0.02 1.99 15 Total: -1.00 -89.41 241.82 2.10 -87.31 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -1.37 Total: 13.61 kcal Atomic # 6 Polarization: 52.76 SS G_CDS: 6.08 Total: 58.84 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.26 Total: -114.40 kcal Atomic # 8 Polarization: -89.58 SS G_CDS: -0.39 Total: -89.97 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -89.41 2.10 -87.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071443.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.642 kcal (2) G-P(sol) polarization free energy of solvation -89.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds