Wall clock time and date at job start Thu Apr 9 2020 12:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00336 * 3 2 1 5 5 H 1.48505 * 109.46968 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99742 * 3 2 1 7 7 C 1.38955 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 N 1.46507 * 109.47005 * 180.02562 * 12 10 9 14 14 C 1.35859 * 119.61719 * 269.72515 * 13 12 10 15 15 C 1.35277 * 120.73145 * 179.75697 * 14 13 12 16 16 C 1.40255 * 119.98151 * 0.51132 * 15 14 13 17 17 C 1.36469 * 119.25978 * 359.74517 * 16 15 14 18 18 F 1.35102 * 120.36126 * 180.02562 * 17 16 15 19 19 C 1.34655 * 119.62475 * 89.99431 * 13 12 10 20 20 O 1.22076 * 120.00542 * 0.02562 * 19 13 12 21 21 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 24 24 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 25 25 H 1.08000 * 119.63655 * 359.97438 * 14 13 12 26 26 H 1.08001 * 120.00787 * 180.27411 * 15 14 13 27 27 H 1.08004 * 120.36873 * 179.71826 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3705 -0.0078 13 7 6.0492 -3.7517 -0.0071 14 6 6.2837 -4.3803 1.1743 15 6 6.7301 -5.6570 1.2014 16 6 6.9661 -6.3426 0.0008 17 6 6.7353 -5.7089 -1.1856 18 9 6.9546 -6.3485 -2.3553 19 6 6.2657 -4.3818 -1.1772 20 8 6.0556 -3.8021 -2.2308 21 1 -0.4850 0.8401 -0.0004 22 1 3.8649 -0.3632 -0.0014 23 1 5.9200 -1.8590 -0.9009 24 1 5.9281 -1.8543 0.8791 25 1 6.1084 -3.8562 2.1022 26 1 6.9085 -6.1469 2.1472 27 1 7.3270 -7.3605 0.0151 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001613859546.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:17 Heat of formation + Delta-G solvation = -69.488444 kcal Electronic energy + Delta-G solvation = -16662.309797 eV Core-core repulsion = 13528.948800 eV Total energy + Delta-G solvation = -3133.360997 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.66898 -41.21902 -38.31713 -36.89523 -34.44616 -33.84576 -31.83500 -29.64604 -28.52473 -24.94858 -23.63271 -22.87273 -19.78496 -18.79679 -18.03956 -17.56733 -16.78747 -16.67785 -15.68930 -15.35875 -14.89504 -14.58891 -14.42193 -14.22446 -13.73804 -13.35679 -12.80256 -12.62348 -12.32498 -12.11287 -11.92781 -11.83285 -11.25530 -10.70046 -10.19560 -10.03603 -9.89320 -9.72829 -8.76790 -8.33672 -7.79446 -6.42961 -3.95737 0.71581 1.83106 2.48477 2.92915 3.00383 3.08768 3.45619 3.54826 3.99980 4.22382 4.41323 4.59411 4.66083 4.90944 5.06403 5.18669 5.29343 5.46478 5.62178 5.83629 5.97373 6.05739 6.46097 7.00920 7.40581 7.96144 8.00930 8.41786 8.79477 9.25584 9.59370 10.69331 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.044182 B = 0.005908 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.593857 B = 4738.043653 C = 4826.187525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.881 3.119 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.575 5.575 10 C 0.431 3.569 11 O -0.566 6.566 12 C 0.075 3.925 13 N -0.462 5.462 14 C 0.150 3.850 15 C -0.226 4.226 16 C -0.049 4.049 17 C -0.033 4.033 18 F -0.121 7.121 19 C 0.509 3.491 20 O -0.530 6.530 21 H 0.276 0.724 22 H 0.373 0.627 23 H 0.119 0.881 24 H 0.113 0.887 25 H 0.167 0.833 26 H 0.153 0.847 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.013 -4.978 5.603 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.707 3.293 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.138 0.862 9 N -0.214 5.214 10 C 0.216 3.784 11 O -0.449 6.449 12 C -0.050 4.050 13 N -0.171 5.171 14 C 0.022 3.978 15 C -0.249 4.249 16 C -0.072 4.072 17 C -0.056 4.056 18 F -0.100 7.100 19 C 0.308 3.692 20 O -0.410 6.410 21 H 0.087 0.913 22 H 0.206 0.794 23 H 0.137 0.863 24 H 0.131 0.869 25 H 0.184 0.816 26 H 0.171 0.829 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.226 -5.150 4.848 16.789 hybrid contribution 0.460 1.195 -0.120 1.286 sum 15.686 -3.955 4.728 16.854 Atomic orbital electron populations 1.69618 1.05718 1.27822 1.48054 1.25069 0.95536 0.98142 0.97167 0.86653 0.79708 0.83774 0.79158 1.19356 1.19960 1.19391 1.19433 0.78852 0.96827 1.48640 0.86161 1.42100 1.07717 1.05853 1.65721 1.19684 0.87810 0.85191 0.85761 1.90618 1.68865 1.30844 1.54541 1.21851 0.95999 0.80956 1.06215 1.44827 1.51714 1.14322 1.06243 1.22035 0.92097 0.94100 0.89567 1.20336 1.11656 0.94210 0.98683 1.21443 0.94365 1.00476 0.90877 1.18066 1.12247 0.92722 0.82610 1.91489 1.92737 1.80026 1.45743 1.16806 0.81182 0.87390 0.83839 1.91016 1.53669 1.67136 1.29221 0.91342 0.79397 0.86321 0.86908 0.81585 0.82946 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.02 13.96 55.50 0.77 -24.24 15 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 15 3 Si 0.88 18.69 27.74 -169.99 -4.71 13.98 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 15 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.27 -5.03 6.52 56.52 0.37 -4.66 15 7 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 15 8 H 0.12 3.85 7.39 -52.48 -0.39 3.47 15 9 N -0.58 -13.27 5.09 -10.96 -0.06 -13.32 15 10 C 0.43 9.54 7.85 -10.98 -0.09 9.45 15 11 O -0.57 -15.16 16.01 5.55 0.09 -15.07 15 12 C 0.08 1.18 5.82 -5.19 -0.03 1.15 15 13 N -0.46 -7.29 2.08 -120.97 -0.25 -7.55 15 14 C 0.15 1.73 10.28 -16.82 -0.17 1.56 15 15 C -0.23 -2.24 10.01 -39.88 -0.40 -2.64 15 16 C -0.05 -0.57 10.07 -39.46 -0.40 -0.96 15 17 C -0.03 -0.53 7.32 -39.26 -0.29 -0.82 15 18 F -0.12 -2.08 17.12 2.25 0.04 -2.04 15 19 C 0.51 9.57 7.41 -15.35 -0.11 9.46 15 20 O -0.53 -12.07 16.51 4.85 0.08 -11.99 15 21 H 0.28 7.26 8.31 -40.82 -0.34 6.92 15 22 H 0.37 7.35 5.76 -40.82 -0.24 7.11 15 23 H 0.12 1.82 7.39 -51.93 -0.38 1.43 15 24 H 0.11 1.19 8.01 -51.93 -0.42 0.77 15 25 H 0.17 1.31 8.03 -52.49 -0.42 0.89 15 26 H 0.15 0.95 8.06 -52.49 -0.42 0.52 15 27 H 0.14 1.19 8.06 -52.48 -0.42 0.77 15 LS Contribution 254.65 15.07 3.84 3.84 Total: -1.00 -36.49 254.65 -3.79 -40.29 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -1.86 Total: 6.53 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -1.73 Total: 9.57 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.47 Total: -45.11 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: 0.17 Total: -27.06 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.98 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -36.49 -3.79 -40.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613859546.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.202 kcal (2) G-P(sol) polarization free energy of solvation -36.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds