Wall clock time and date at job start Thu Apr 9 2020 12:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00336 * 3 2 1 5 5 H 1.48505 * 109.46968 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99742 * 3 2 1 7 7 C 1.38955 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 N 1.46507 * 109.47005 * 180.02562 * 12 10 9 14 14 C 1.35859 * 119.61719 * 269.72515 * 13 12 10 15 15 C 1.35277 * 120.73145 * 179.75697 * 14 13 12 16 16 C 1.40255 * 119.98151 * 0.51132 * 15 14 13 17 17 C 1.36469 * 119.25978 * 359.74517 * 16 15 14 18 18 F 1.35102 * 120.36126 * 180.02562 * 17 16 15 19 19 C 1.34655 * 119.62475 * 89.99431 * 13 12 10 20 20 O 1.22076 * 120.00542 * 0.02562 * 19 13 12 21 21 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 24 24 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 25 25 H 1.08000 * 119.63655 * 359.97438 * 14 13 12 26 26 H 1.08001 * 120.00787 * 180.27411 * 15 14 13 27 27 H 1.08004 * 120.36873 * 179.71826 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3705 -0.0078 13 7 6.0492 -3.7517 -0.0071 14 6 6.2837 -4.3803 1.1743 15 6 6.7301 -5.6570 1.2014 16 6 6.9661 -6.3426 0.0008 17 6 6.7353 -5.7089 -1.1856 18 9 6.9546 -6.3485 -2.3553 19 6 6.2657 -4.3818 -1.1772 20 8 6.0556 -3.8021 -2.2308 21 1 -0.4850 0.8401 -0.0004 22 1 3.8649 -0.3632 -0.0014 23 1 5.9200 -1.8590 -0.9009 24 1 5.9281 -1.8543 0.8791 25 1 6.1084 -3.8562 2.1022 26 1 6.9085 -6.1469 2.1472 27 1 7.3270 -7.3605 0.0151 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001613859546.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:16 Heat of formation + Delta-G solvation = -98.562540 kcal Electronic energy + Delta-G solvation = -16663.570545 eV Core-core repulsion = 13528.948800 eV Total energy + Delta-G solvation = -3134.621745 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.83497 -42.43749 -40.11078 -38.16757 -36.21624 -35.22696 -33.85799 -30.71030 -29.93338 -26.73802 -24.78314 -24.09525 -21.58384 -20.63046 -19.20068 -18.78269 -18.28203 -17.88567 -17.16955 -16.84511 -16.39686 -15.99541 -15.67357 -15.66228 -15.12418 -14.87952 -14.56922 -14.24878 -13.56865 -13.35416 -13.10875 -13.07690 -12.90445 -12.46432 -12.00392 -11.60637 -11.33329 -11.20412 -10.51782 -10.35102 -8.94172 -8.47367 -6.10617 -0.32116 0.75242 1.27539 1.33421 1.34654 1.44424 1.76158 2.20101 2.38730 2.84056 3.07182 3.19090 3.66289 3.79881 3.94975 3.99298 4.12610 4.23384 4.36060 4.95635 4.98947 5.09799 5.45174 5.54708 5.84251 5.88731 6.46265 6.74418 6.77992 7.24985 7.78061 8.69677 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.044182 B = 0.005908 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.593857 B = 4738.043653 C = 4826.187525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.219 1.219 7 C -0.334 4.334 8 H 0.053 0.947 9 N -0.575 5.575 10 C 0.432 3.568 11 O -0.620 6.620 12 C 0.085 3.915 13 N -0.466 5.466 14 C 0.140 3.860 15 C -0.209 4.209 16 C -0.010 4.010 17 C -0.094 4.094 18 F -0.141 7.141 19 C 0.485 3.515 20 O -0.599 6.599 21 H 0.282 0.718 22 H 0.394 0.606 23 H 0.123 0.877 24 H 0.182 0.818 25 H 0.212 0.788 26 H 0.206 0.794 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.178 -4.097 8.507 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.211 4.211 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.141 1.141 7 C -0.463 4.463 8 H 0.072 0.928 9 N -0.216 5.216 10 C 0.219 3.781 11 O -0.506 6.506 12 C -0.040 4.040 13 N -0.173 5.173 14 C 0.014 3.986 15 C -0.231 4.231 16 C -0.032 4.032 17 C -0.116 4.116 18 F -0.120 7.120 19 C 0.288 3.712 20 O -0.486 6.486 21 H 0.091 0.909 22 H 0.231 0.769 23 H 0.141 0.859 24 H 0.199 0.801 25 H 0.229 0.771 26 H 0.223 0.777 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 18.433 -4.295 7.810 20.474 hybrid contribution -0.554 0.711 -0.877 1.258 sum 17.879 -3.584 6.933 19.508 Atomic orbital electron populations 1.69799 1.08296 1.29578 1.49168 1.26180 0.96496 1.02916 0.95490 0.85378 0.80033 0.76366 0.79858 1.18879 1.19640 1.14124 1.18972 0.81207 0.95022 1.51100 0.92842 1.41881 1.05961 1.07360 1.66376 1.20940 0.90704 0.83892 0.82559 1.90592 1.71105 1.32854 1.56017 1.21947 0.90348 0.82028 1.09691 1.44934 1.51040 1.14489 1.06875 1.23038 0.91003 0.95193 0.89391 1.21085 1.08701 0.93419 0.99880 1.22031 0.89951 1.01678 0.89572 1.18309 1.16885 0.92681 0.83757 1.91422 1.93397 1.80137 1.47022 1.17388 0.81358 0.88461 0.84020 1.90950 1.57481 1.68688 1.31457 0.90881 0.76942 0.85896 0.80095 0.77111 0.77722 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.96 21.66 0.30 -55.00 15 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 15 3 Si 0.96 37.28 27.74 68.60 1.90 39.19 15 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 15 6 H -0.22 -6.65 6.52 99.48 0.65 -6.00 15 7 C -0.33 -19.29 10.16 84.04 0.85 -18.44 15 8 H 0.05 3.72 7.39 -2.91 -0.02 3.70 15 9 N -0.58 -26.21 5.09 -306.97 -1.56 -27.78 15 10 C 0.43 18.98 7.85 87.65 0.69 19.67 15 11 O -0.62 -34.28 16.01 -3.06 -0.05 -34.33 15 12 C 0.08 2.42 5.82 85.63 0.50 2.92 15 13 N -0.47 -13.73 2.08 -654.78 -1.36 -15.09 15 14 C 0.14 2.57 10.28 83.39 0.86 3.43 15 15 C -0.21 -2.99 10.01 22.08 0.22 -2.77 15 16 C -0.01 -0.19 10.07 22.35 0.23 0.04 15 17 C -0.09 -3.01 7.32 22.48 0.16 -2.85 15 18 F -0.14 -5.05 17.12 44.97 0.77 -4.28 15 19 C 0.49 18.53 7.41 84.88 0.63 19.16 15 20 O -0.60 -28.85 16.51 -5.56 -0.09 -28.94 15 21 H 0.28 15.25 8.31 -92.71 -0.77 14.48 15 22 H 0.39 14.35 5.76 -92.70 -0.53 13.82 15 23 H 0.12 3.54 7.39 -2.39 -0.02 3.52 15 24 H 0.18 2.69 8.01 -2.39 -0.02 2.67 15 25 H 0.21 1.90 8.03 -2.91 -0.02 1.87 15 26 H 0.21 0.89 8.06 -2.91 -0.02 0.86 15 27 H 0.18 2.14 8.06 -2.91 -0.02 2.11 15 Total: -1.00 -92.32 254.65 5.15 -87.18 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.63 Total: 18.05 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 4.60 Total: 21.01 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -2.62 Total: -97.87 kcal Atomic # 8 Polarization: -63.13 SS G_CDS: -0.14 Total: -63.28 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.77 Total: -4.28 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 1.90 Total: 39.19 kcal Total: -92.32 5.15 -87.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001613859546.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.387 kcal (2) G-P(sol) polarization free energy of solvation -92.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds