Wall clock time and date at job start Thu Apr 9 2020 12:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86793 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47325 * 239.99924 * 3 2 1 5 5 H 1.48499 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47071 * 120.00013 * 3 2 1 7 7 C 1.40053 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.46377 * 120.00173 * 0.02562 * 7 2 1 10 10 O 1.21684 * 119.99855 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99643 * 179.97438 * 9 7 2 12 12 C 1.46504 * 119.99605 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47119 * 179.97438 * 12 11 9 14 14 C 1.38714 * 120.78567 * 269.98084 * 13 12 11 15 15 C 1.38143 * 119.19787 * 180.02562 * 14 13 12 16 16 N 1.31904 * 120.77996 * 0.02562 * 15 14 13 17 17 C 1.31950 * 121.70670 * 359.68219 * 16 15 14 18 18 Cl 1.73608 * 119.63367 * 180.28810 * 17 16 15 19 19 C 1.38393 * 120.73265 * 0.58300 * 17 16 15 20 20 H 0.96992 * 119.99401 * 0.02562 * 1 2 3 21 21 H 0.96996 * 120.00595 * 0.02562 * 11 9 7 22 22 H 1.09004 * 109.46593 * 60.00504 * 12 11 9 23 23 H 1.08994 * 109.47447 * 300.00678 * 12 11 9 24 24 H 1.08000 * 120.39950 * 359.97438 * 14 13 12 25 25 H 1.07998 * 119.60887 * 179.97438 * 15 14 13 26 26 H 1.08002 * 120.43045 * 179.73537 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0001 9 6 1.2751 -2.4806 -0.0017 10 8 0.0582 -2.4805 -0.0017 11 7 1.9490 -3.6477 -0.0027 12 6 1.2164 -4.9165 -0.0033 13 6 2.1956 -6.0619 -0.0051 14 6 2.6558 -6.6008 -1.1976 15 6 3.5527 -7.6508 -1.1609 16 7 3.9712 -8.1412 -0.0102 17 6 3.5597 -7.6505 1.1435 18 17 4.1512 -8.3326 2.6263 19 6 2.6572 -6.6022 1.1846 20 1 -0.4849 0.8400 -0.0004 21 1 2.9189 -3.6478 -0.0023 22 1 0.5895 -4.9735 -0.8932 23 1 0.5900 -4.9748 0.8868 24 1 2.3162 -6.2047 -2.1432 25 1 3.9149 -8.0756 -2.0854 26 1 2.3204 -6.2071 2.1316 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626460620.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:21 Heat of formation + Delta-G solvation = -16.864552 kcal Electronic energy + Delta-G solvation = -13989.488894 eV Core-core repulsion = 11286.746215 eV Total energy + Delta-G solvation = -2702.742679 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.041 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.33169 -37.41707 -36.69143 -34.44306 -32.56526 -31.51642 -31.09347 -27.31434 -25.36495 -23.62954 -21.99768 -19.80547 -17.72283 -16.76659 -16.54424 -15.81878 -15.39169 -14.73812 -14.33625 -14.17897 -14.00700 -13.38136 -12.56588 -12.10786 -12.04056 -11.77723 -11.46369 -11.33484 -11.24395 -10.93224 -10.54299 -10.32587 -9.85605 -9.71492 -9.06453 -8.90840 -7.72123 -7.67720 -6.25766 -4.71961 0.86114 1.03543 1.73370 3.12366 3.17537 3.19287 3.53453 4.06541 4.35557 4.50728 4.60197 4.85063 4.96019 5.00662 5.13905 5.48653 5.66571 5.74702 5.92069 6.17879 6.39856 6.45909 7.37001 7.60250 7.78930 7.93377 8.23284 8.95295 9.39723 10.50839 10.68694 Molecular weight = 240.04amu Principal moments of inertia in cm(-1) A = 0.038064 B = 0.004833 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.419470 B = 5792.429388 C = 5997.579211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.763 5.763 12 C 0.168 3.832 13 C -0.030 4.030 14 C -0.155 4.155 15 C 0.114 3.886 16 N -0.484 5.484 17 C 0.172 3.828 18 Cl -0.038 7.038 19 C -0.139 4.139 20 H 0.270 0.730 21 H 0.382 0.618 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.145 0.855 25 H 0.165 0.835 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 -12.190 0.085 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.461 6.461 11 N -0.420 5.420 12 C 0.043 3.957 13 C -0.039 4.039 14 C -0.175 4.175 15 C -0.043 4.043 16 N -0.196 5.196 17 C 0.008 3.992 18 Cl -0.009 7.009 19 C -0.161 4.161 20 H 0.081 0.919 21 H 0.213 0.787 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.163 0.837 25 H 0.182 0.818 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.506 -12.828 0.225 14.386 hybrid contribution 0.460 1.314 0.132 1.399 sum 6.966 -11.514 0.358 13.462 Atomic orbital electron populations 1.70003 1.07071 1.27541 1.34942 1.25713 0.94653 1.00340 0.92564 0.86403 0.79803 0.80872 0.79509 1.19238 1.20507 1.19234 1.20828 0.93601 0.89181 1.54481 0.91381 1.18259 0.87220 0.82190 0.76403 1.90610 1.14023 1.86528 1.54957 1.46223 1.08651 1.03898 1.83183 1.19859 0.91751 0.81656 1.02440 1.20686 0.95399 0.95646 0.92125 1.22270 0.98327 0.97378 0.99539 1.22641 0.93639 0.93172 0.94818 1.66966 1.25258 1.29768 0.97609 1.21593 0.95423 0.93709 0.88501 1.98397 1.87848 1.85025 1.29670 1.21851 0.97679 0.96122 1.00421 0.91931 0.78670 0.91539 0.91666 0.83695 0.81777 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.56 11.83 55.55 0.66 -21.91 15 2 C 0.09 2.39 5.50 -17.36 -0.10 2.29 15 3 Si 0.91 19.75 29.56 -169.99 -5.02 14.72 15 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 7 C -0.54 -14.99 9.54 -35.63 -0.34 -15.33 15 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 15 9 C 0.55 15.26 7.75 -12.99 -0.10 15.16 15 10 O -0.58 -18.19 15.02 5.20 0.08 -18.11 15 11 N -0.76 -16.20 5.54 -62.90 -0.35 -16.55 15 12 C 0.17 2.98 5.85 -5.19 -0.03 2.95 15 13 C -0.03 -0.42 5.29 -104.33 -0.55 -0.97 15 14 C -0.15 -1.87 9.82 -39.44 -0.39 -2.26 15 15 C 0.11 1.30 11.18 -17.56 -0.20 1.10 15 16 N -0.48 -6.58 10.34 -10.36 -0.11 -6.69 15 17 C 0.17 2.33 7.27 -17.44 -0.13 2.21 15 18 Cl -0.04 -0.46 29.11 -51.86 -1.51 -1.97 15 19 C -0.14 -1.90 9.59 -39.40 -0.38 -2.27 15 20 H 0.27 7.21 8.29 -40.82 -0.34 6.87 15 21 H 0.38 7.28 8.44 -40.82 -0.34 6.93 15 22 H 0.07 1.21 8.10 -51.93 -0.42 0.79 15 23 H 0.07 1.21 8.10 -51.93 -0.42 0.79 15 24 H 0.15 1.53 8.06 -52.49 -0.42 1.10 15 25 H 0.17 1.32 8.06 -52.49 -0.42 0.89 15 26 H 0.15 1.87 8.06 -52.49 -0.42 1.45 15 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -33.09 259.46 -6.55 -39.64 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -2.00 Total: 4.08 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.21 Total: 2.87 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.20 Total: -45.15 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.08 Total: -18.11 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.09 -6.55 -39.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626460620.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.773 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds