Wall clock time and date at job start Thu Apr 9 2020 12:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86803 * 120.00279 * 2 1 4 4 H 1.48506 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46892 * 300.00027 * 3 2 1 6 6 H 1.48498 * 109.46858 * 60.00000 * 3 2 1 7 7 C 1.39022 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00105 * 179.97438 * 7 2 1 9 9 N 1.36907 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00045 * 179.97438 * 9 7 2 11 11 O 1.21642 * 119.99879 * 0.02562 * 10 9 7 12 12 C 1.47323 * 120.00435 * 179.97438 * 10 9 7 13 13 C 1.39823 * 120.20502 * 5.93299 * 12 10 9 14 14 C 1.37724 * 119.93916 * 179.97438 * 13 12 10 15 15 C 1.38622 * 120.36777 * 0.02562 * 14 13 12 16 16 C 1.38058 * 120.42249 * 359.97438 * 15 14 13 17 17 Cl 1.73602 * 119.97328 * 180.28020 * 16 15 14 18 18 C 1.39038 * 120.04995 * 359.97438 * 16 15 14 19 19 N 1.38944 * 120.18258 * 179.97438 * 18 16 15 20 20 H 0.97009 * 119.99803 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00317 * 0.02562 * 9 7 2 22 22 H 1.07999 * 120.03090 * 359.95622 * 13 12 10 23 23 H 1.07996 * 119.81331 * 179.97438 * 14 13 12 24 24 H 1.08006 * 119.79145 * 180.02562 * 15 14 13 25 25 H 0.96996 * 120.00097 * 354.45921 * 19 18 16 26 26 H 0.96996 * 119.99770 * 174.45685 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.7079 1.3462 -0.0006 5 1 1.8891 2.3964 -1.2125 6 1 1.8892 2.3964 1.2125 7 6 2.0089 -1.2040 -0.0005 8 1 3.0888 -1.2040 -0.0010 9 7 1.3243 -2.3896 -0.0016 10 6 1.9981 -3.5568 -0.0026 11 8 3.2145 -3.5569 -0.0022 12 6 1.2614 -4.8327 -0.0032 13 6 -0.1312 -4.8408 -0.1276 14 6 -0.8143 -6.0367 -0.1280 15 6 -0.1289 -7.2353 -0.0051 16 6 1.2461 -7.2449 0.1186 17 17 2.0934 -8.7530 0.2645 18 6 1.9533 -6.0478 0.1200 19 7 3.3371 -6.0541 0.2449 20 1 -0.4850 0.8401 -0.0004 21 1 0.3543 -2.3896 -0.0024 22 1 -0.6708 -3.9102 -0.2229 23 1 -1.8900 -6.0406 -0.2238 24 1 -0.6739 -8.1678 -0.0070 25 1 3.8052 -6.8871 0.4118 26 1 3.8351 -5.2256 0.1651 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626567436.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:23 Heat of formation + Delta-G solvation = -22.197143 kcal Electronic energy + Delta-G solvation = -14454.596100 eV Core-core repulsion = 11751.622182 eV Total energy + Delta-G solvation = -2702.973917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.58173 -37.54002 -36.08255 -34.70862 -33.59817 -31.61065 -30.24455 -28.28409 -25.27308 -23.09995 -21.72050 -19.78981 -18.22348 -17.12587 -16.36785 -16.14185 -15.14019 -14.49484 -14.18130 -14.00032 -13.85945 -13.48916 -12.96926 -12.74433 -11.80295 -11.68408 -11.34646 -11.28404 -11.15520 -10.74961 -10.43142 -10.37709 -10.34536 -9.70976 -8.56040 -8.47871 -8.15672 -7.16100 -6.60813 -3.95063 1.31544 1.84746 2.40712 3.08671 3.18940 3.25812 3.62982 4.04746 4.35789 4.43040 4.81850 5.21642 5.22890 5.35657 5.58541 5.85412 5.90361 6.18481 6.45642 6.55869 6.79993 7.06497 7.38397 7.84346 7.87198 8.31502 8.53207 9.01213 9.35639 9.89652 10.55977 Molecular weight = 240.04amu Principal moments of inertia in cm(-1) A = 0.049374 B = 0.005945 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.967912 B = 4709.066469 C = 5262.063858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.298 4.298 8 H 0.109 0.891 9 N -0.539 5.539 10 C 0.480 3.520 11 O -0.605 6.605 12 C -0.177 4.177 13 C -0.047 4.047 14 C -0.182 4.182 15 C -0.056 4.056 16 C -0.136 4.136 17 Cl -0.087 7.087 18 C 0.277 3.723 19 N -0.850 5.850 20 H 0.276 0.724 21 H 0.395 0.605 22 H 0.131 0.869 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.387 0.613 26 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 -11.034 0.186 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.179 4.179 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.427 4.427 8 H 0.127 0.873 9 N -0.171 5.171 10 C 0.269 3.731 11 O -0.494 6.494 12 C -0.185 4.185 13 C -0.067 4.067 14 C -0.203 4.203 15 C -0.076 4.076 16 C -0.167 4.167 17 Cl -0.058 7.058 18 C 0.163 3.837 19 N -0.399 5.399 20 H 0.086 0.914 21 H 0.231 0.769 22 H 0.148 0.852 23 H 0.144 0.856 24 H 0.144 0.856 25 H 0.215 0.785 26 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -0.845 -10.837 0.193 10.872 hybrid contribution 0.094 0.582 0.055 0.592 sum -0.752 -10.255 0.248 10.286 Atomic orbital electron populations 1.69602 1.06125 1.28701 1.48378 1.25389 0.95705 1.00126 0.96702 0.85721 0.79750 0.80539 0.77909 1.19010 1.20505 1.20506 1.19880 0.93749 0.82072 1.47026 0.87330 1.41794 1.09537 1.04562 1.61210 1.17416 0.87034 0.83012 0.85603 1.90187 1.13679 1.85768 1.59772 1.19638 0.93622 0.92544 1.12744 1.21285 0.92651 0.98617 0.94140 1.20651 0.99730 0.91395 1.08500 1.20770 0.91243 0.98734 0.96846 1.20206 0.92768 0.84603 1.19172 1.98295 1.78337 1.32087 1.97130 1.17414 0.85228 0.90668 0.90351 1.43613 1.03734 1.14983 1.77577 0.91429 0.76939 0.85162 0.85576 0.85589 0.78529 0.73204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.20 13.05 55.50 0.72 -22.47 15 2 C 0.02 0.63 5.50 -17.45 -0.10 0.53 15 3 Si 0.93 20.20 29.55 -169.99 -5.02 15.18 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 15 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.30 -8.04 9.68 -14.99 -0.15 -8.19 15 8 H 0.11 3.05 7.15 -52.49 -0.38 2.67 15 9 N -0.54 -13.51 5.23 -11.98 -0.06 -13.58 15 10 C 0.48 11.55 7.69 -12.57 -0.10 11.46 15 11 O -0.61 -15.72 13.22 5.24 0.07 -15.66 15 12 C -0.18 -3.56 5.89 -104.81 -0.62 -4.17 15 13 C -0.05 -0.80 9.52 -39.18 -0.37 -1.17 15 14 C -0.18 -2.62 10.02 -39.63 -0.40 -3.02 15 15 C -0.06 -0.79 9.81 -39.51 -0.39 -1.18 15 16 C -0.14 -2.15 6.33 -39.35 -0.25 -2.40 15 17 Cl -0.09 -1.18 27.60 -51.86 -1.43 -2.61 15 18 C 0.28 5.11 6.76 -83.54 -0.57 4.55 15 19 N -0.85 -15.03 8.88 32.58 0.29 -14.74 15 20 H 0.28 6.75 8.31 -40.82 -0.34 6.41 15 21 H 0.40 9.43 5.96 -40.82 -0.24 9.19 15 22 H 0.13 2.17 6.45 -52.49 -0.34 1.83 15 23 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 24 H 0.13 1.43 8.06 -52.48 -0.42 1.00 15 25 H 0.39 5.78 7.52 -40.82 -0.31 5.47 15 26 H 0.42 8.40 5.34 -40.94 -0.22 8.18 15 LS Contribution 246.89 15.07 3.72 3.72 Total: -1.00 -28.31 246.89 -6.10 -34.41 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -1.46 Total: 19.33 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.93 Total: -3.59 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.95 Total: -50.79 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.07 Total: -15.66 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.43 Total: -2.61 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.31 -6.10 -34.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626567436.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.214 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds