Wall clock time and date at job start Thu Apr 9 2020 12:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86803 * 120.00279 * 2 1 4 4 H 1.48506 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46892 * 300.00027 * 3 2 1 6 6 H 1.48498 * 109.46858 * 60.00000 * 3 2 1 7 7 C 1.39022 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00105 * 179.97438 * 7 2 1 9 9 N 1.36907 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00045 * 179.97438 * 9 7 2 11 11 O 1.21642 * 119.99879 * 0.02562 * 10 9 7 12 12 C 1.47323 * 120.00435 * 179.97438 * 10 9 7 13 13 C 1.39823 * 120.20502 * 5.93299 * 12 10 9 14 14 C 1.37724 * 119.93916 * 179.97438 * 13 12 10 15 15 C 1.38622 * 120.36777 * 0.02562 * 14 13 12 16 16 C 1.38058 * 120.42249 * 359.97438 * 15 14 13 17 17 Cl 1.73602 * 119.97328 * 180.28020 * 16 15 14 18 18 C 1.39038 * 120.04995 * 359.97438 * 16 15 14 19 19 N 1.38944 * 120.18258 * 179.97438 * 18 16 15 20 20 H 0.97009 * 119.99803 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00317 * 0.02562 * 9 7 2 22 22 H 1.07999 * 120.03090 * 359.95622 * 13 12 10 23 23 H 1.07996 * 119.81331 * 179.97438 * 14 13 12 24 24 H 1.08006 * 119.79145 * 180.02562 * 15 14 13 25 25 H 0.96996 * 120.00097 * 354.45921 * 19 18 16 26 26 H 0.96996 * 119.99770 * 174.45685 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.7079 1.3462 -0.0006 5 1 1.8891 2.3964 -1.2125 6 1 1.8892 2.3964 1.2125 7 6 2.0089 -1.2040 -0.0005 8 1 3.0888 -1.2040 -0.0010 9 7 1.3243 -2.3896 -0.0016 10 6 1.9981 -3.5568 -0.0026 11 8 3.2145 -3.5569 -0.0022 12 6 1.2614 -4.8327 -0.0032 13 6 -0.1312 -4.8408 -0.1276 14 6 -0.8143 -6.0367 -0.1280 15 6 -0.1289 -7.2353 -0.0051 16 6 1.2461 -7.2449 0.1186 17 17 2.0934 -8.7530 0.2645 18 6 1.9533 -6.0478 0.1200 19 7 3.3371 -6.0541 0.2449 20 1 -0.4850 0.8401 -0.0004 21 1 0.3543 -2.3896 -0.0024 22 1 -0.6708 -3.9102 -0.2229 23 1 -1.8900 -6.0406 -0.2238 24 1 -0.6739 -8.1678 -0.0070 25 1 3.8052 -6.8871 0.4118 26 1 3.8351 -5.2256 0.1651 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626567436.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:23 Heat of formation + Delta-G solvation = -41.330118 kcal Electronic energy + Delta-G solvation = -14455.425768 eV Core-core repulsion = 11751.622182 eV Total energy + Delta-G solvation = -2703.803585 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.041 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11504 -39.17021 -37.28685 -36.41265 -35.19739 -33.45946 -31.70900 -29.62491 -27.14621 -24.58784 -23.06611 -21.49031 -20.10207 -18.62400 -17.74603 -17.62616 -16.91162 -16.11961 -15.83908 -15.68360 -15.11941 -14.97311 -14.47312 -14.37330 -13.56009 -13.07424 -12.98379 -12.67421 -12.49745 -12.29841 -12.11660 -11.90566 -11.66577 -11.59254 -10.42214 -10.13409 -9.77127 -8.54469 -8.51573 -5.99106 -0.03322 0.54610 1.19001 1.38411 1.41916 1.56153 2.05308 2.26860 2.83745 2.99347 3.16373 3.30084 3.95495 4.04923 4.26912 4.46384 4.62759 4.81654 5.08045 5.31073 5.36014 5.52423 5.80616 5.94238 6.36584 6.59983 6.91815 7.09102 7.45174 8.01122 8.63041 Molecular weight = 240.04amu Principal moments of inertia in cm(-1) A = 0.049374 B = 0.005945 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.967912 B = 4709.066469 C = 5262.063858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.552 5.552 10 C 0.479 3.521 11 O -0.632 6.632 12 C -0.215 4.215 13 C -0.047 4.047 14 C -0.170 4.170 15 C -0.036 4.036 16 C -0.140 4.140 17 Cl -0.065 7.065 18 C 0.263 3.737 19 N -0.853 5.853 20 H 0.282 0.718 21 H 0.398 0.602 22 H 0.129 0.871 23 H 0.165 0.835 24 H 0.166 0.834 25 H 0.398 0.602 26 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -12.588 0.166 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.185 5.185 10 C 0.270 3.730 11 O -0.523 6.523 12 C -0.224 4.224 13 C -0.067 4.067 14 C -0.190 4.190 15 C -0.056 4.056 16 C -0.172 4.172 17 Cl -0.036 7.036 18 C 0.149 3.851 19 N -0.401 5.401 20 H 0.091 0.909 21 H 0.234 0.766 22 H 0.147 0.853 23 H 0.183 0.817 24 H 0.184 0.816 25 H 0.228 0.772 26 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.275 -12.439 0.176 12.647 hybrid contribution 0.503 0.799 0.062 0.946 sum -1.772 -11.640 0.238 11.777 Atomic orbital electron populations 1.69655 1.06966 1.29747 1.48729 1.26150 0.96600 1.02626 0.95725 0.84800 0.78057 0.76597 0.78452 1.19615 1.19419 1.19441 1.19822 0.93092 0.83684 1.49928 0.89630 1.41776 1.09561 1.04507 1.62701 1.18176 0.87050 0.84212 0.83534 1.90163 1.15119 1.86686 1.60295 1.19425 0.94857 0.91100 1.16974 1.21407 0.91518 1.00089 0.93710 1.21064 1.01534 0.90095 1.06347 1.21292 0.90518 1.00270 0.93496 1.20378 0.93633 0.84708 1.18444 1.98307 1.78120 1.30167 1.97003 1.17611 0.85423 0.91262 0.90805 1.43515 1.03849 1.14969 1.77770 0.90861 0.76602 0.85313 0.81702 0.81644 0.77194 0.74506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.10 13.05 21.68 0.28 -47.82 15 2 C -0.01 -0.52 5.50 84.95 0.47 -0.05 15 3 Si 1.00 41.93 29.55 68.60 2.03 43.96 15 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 15 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 7 C -0.34 -18.92 9.68 84.09 0.81 -18.11 15 8 H 0.09 5.09 7.15 -2.91 -0.02 5.07 15 9 N -0.55 -28.86 5.23 -310.07 -1.62 -30.48 15 10 C 0.48 24.01 7.69 86.63 0.67 24.67 15 11 O -0.63 -34.43 13.22 -4.16 -0.06 -34.48 15 12 C -0.21 -8.69 5.89 -19.98 -0.12 -8.81 15 13 C -0.05 -1.57 9.52 22.53 0.21 -1.36 15 14 C -0.17 -4.25 10.02 22.24 0.22 -4.02 15 15 C -0.04 -0.86 9.81 22.32 0.22 -0.65 15 16 C -0.14 -4.05 6.33 22.42 0.14 -3.91 15 17 Cl -0.06 -1.56 27.60 -2.72 -0.08 -1.64 15 18 C 0.26 9.50 6.76 38.73 0.26 9.76 15 19 N -0.85 -30.31 8.88 -50.84 -0.45 -30.76 15 20 H 0.28 13.77 8.31 -92.70 -0.77 13.00 15 21 H 0.40 19.72 5.96 -92.71 -0.55 19.17 15 22 H 0.13 4.25 6.45 -2.91 -0.02 4.23 15 23 H 0.17 2.89 8.06 -2.91 -0.02 2.87 15 24 H 0.17 2.71 8.06 -2.91 -0.02 2.69 15 25 H 0.40 11.70 7.52 -92.71 -0.70 11.01 15 26 H 0.41 16.95 5.34 -94.62 -0.51 16.44 15 Total: -1.00 -62.75 246.89 2.51 -60.24 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -0.49 Total: 43.44 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 2.89 Total: -2.47 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -1.79 Total: -109.06 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.06 Total: -34.48 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -62.75 2.51 -60.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626567436.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.914 kcal (2) G-P(sol) polarization free energy of solvation -62.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds