Wall clock time and date at job start Thu Apr 9 2020 12:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86811 * 119.99460 * 2 1 4 4 H 1.48500 * 109.46917 * 270.00217 * 3 2 1 5 5 H 1.48507 * 109.46810 * 29.99727 * 3 2 1 6 6 H 1.48493 * 109.47280 * 150.00035 * 3 2 1 7 7 C 1.37872 * 120.00944 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00515 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99565 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47315 * 180.02562 * 9 7 2 11 11 C 1.81397 * 103.00493 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47425 * 180.02562 * 11 10 9 13 13 N 1.30275 * 126.28506 * 89.99677 * 12 11 10 14 14 N 1.28664 * 109.38152 * 179.73391 * 13 12 11 15 15 C 1.30270 * 109.38100 * 0.44292 * 14 13 12 16 16 C 1.50706 * 126.28141 * 179.82649 * 15 14 13 17 17 C 1.53002 * 117.49668 * 59.69285 * 16 15 14 18 18 C 1.53000 * 60.02940 * 252.51929 * 17 16 15 19 19 O 1.34358 * 126.28173 * 269.99844 * 12 11 10 20 20 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47316 * 60.00083 * 9 7 2 22 22 H 1.09000 * 109.47350 * 300.00241 * 9 7 2 23 23 H 1.09000 * 109.47564 * 59.99713 * 11 10 9 24 24 H 1.09001 * 109.47022 * 299.99808 * 11 10 9 25 25 H 1.09000 * 115.55924 * 205.37690 * 16 15 14 26 26 H 1.09002 * 117.49918 * 145.01964 * 17 16 15 27 27 H 1.09002 * 117.49754 * 0.02562 * 17 16 15 28 28 H 1.09008 * 117.49673 * 107.47884 * 18 17 16 29 29 H 1.08999 * 117.49942 * 252.47315 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6528 0.7000 6 1 3.5466 1.4405 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0001 9 6 1.2513 -2.4990 -0.0005 10 16 2.4302 -3.8777 -0.0005 11 6 1.3521 -5.3366 -0.0013 12 6 2.1962 -6.5850 -0.0008 13 7 2.6273 -7.2237 1.0496 14 7 3.3124 -8.2467 0.6760 15 6 3.3495 -8.2902 -0.6254 16 6 4.0516 -9.3276 -1.4634 17 6 3.6180 -10.7850 -1.2929 18 6 4.9665 -10.3191 -0.7403 19 8 2.6422 -7.2437 -1.0835 20 1 -0.4851 0.8399 0.0004 21 1 0.6243 -2.5567 -0.8903 22 1 0.6250 -2.5571 0.8896 23 1 0.7232 -5.3232 -0.8915 24 1 0.7227 -5.3237 0.8885 25 1 4.3481 -9.0042 -2.4612 26 1 3.6293 -11.4204 -2.1785 27 1 2.8247 -10.9933 -0.5749 28 1 5.0604 -10.2206 0.3412 29 1 5.8651 -10.6483 -1.2622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641190298.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:33 Heat of formation + Delta-G solvation = 56.289437 kcal Electronic energy + Delta-G solvation = -13890.514909 eV Core-core repulsion = 11328.821226 eV Total energy + Delta-G solvation = -2561.693683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.15635 -37.69441 -36.06588 -33.23283 -32.57858 -28.74984 -28.26370 -24.91305 -23.34084 -22.81005 -22.30467 -21.34267 -17.61834 -17.29203 -16.68982 -15.99024 -15.50710 -15.12811 -14.59317 -14.44048 -13.62579 -12.88187 -12.81957 -12.44371 -12.33986 -12.12098 -11.95689 -11.73715 -11.47051 -11.08630 -10.92726 -10.88299 -10.76237 -10.31120 -9.71755 -9.22405 -9.00062 -8.68319 -6.90532 -6.26653 -4.31699 0.99742 2.01812 2.20188 2.76846 3.23166 3.29052 3.34125 3.42287 3.53610 3.81055 4.26509 4.30322 4.42535 4.49666 4.58411 5.08023 5.10895 5.24987 5.31443 5.40141 5.52400 5.53664 5.69759 5.72032 5.78618 6.96169 6.98246 7.67457 7.90160 8.36835 8.69768 9.32013 10.84439 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.069669 B = 0.004008 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.804684 B = 6984.196830 C = 7114.485881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.090 3.910 10 S -0.268 6.268 11 C -0.011 4.011 12 C 0.199 3.801 13 N -0.276 5.276 14 N -0.286 5.286 15 C 0.185 3.815 16 C -0.081 4.081 17 C -0.154 4.154 18 C -0.145 4.145 19 O -0.216 6.216 20 H 0.267 0.733 21 H 0.041 0.959 22 H 0.042 0.958 23 H 0.108 0.892 24 H 0.123 0.877 25 H 0.138 0.862 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -17.824 -4.170 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.086 0.914 9 C -0.056 4.056 10 S -0.043 6.043 11 C -0.159 4.159 12 C -0.012 4.012 13 N -0.124 5.124 14 N -0.133 5.133 15 C -0.026 4.026 16 C -0.101 4.101 17 C -0.192 4.192 18 C -0.182 4.182 19 O -0.095 6.095 20 H 0.077 0.923 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.126 0.874 24 H 0.141 0.859 25 H 0.155 0.845 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.730 -17.980 -2.921 19.096 hybrid contribution -1.220 1.325 -1.272 2.205 sum 4.510 -16.655 -4.193 17.757 Atomic orbital electron populations 1.69937 1.06129 1.27552 1.49278 1.24952 0.95013 0.99295 0.94461 0.86310 0.79752 0.81978 0.78393 1.20292 1.20876 1.19494 1.20612 0.93545 0.88441 1.52853 0.91352 1.21195 0.93587 0.90203 1.00664 1.87124 1.19341 0.99720 1.98083 1.21654 0.97679 0.88745 1.07825 1.27093 0.98149 0.96573 0.79364 1.74439 1.10610 1.02324 1.25008 1.74304 1.15859 1.14216 1.08895 1.26704 0.95436 0.89404 0.91094 1.20096 1.04225 0.86682 0.99077 1.23168 0.99197 0.92873 1.03941 1.23157 0.94274 0.98768 1.02022 1.84755 1.52967 1.33616 1.38161 0.92346 0.94091 0.93949 0.87353 0.85934 0.84466 0.87138 0.87905 0.86935 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 13.29 55.43 0.74 -24.55 15 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 15 3 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.51 -14.22 9.13 -34.44 -0.31 -14.54 15 8 H 0.07 1.90 7.71 -52.49 -0.40 1.50 15 9 C 0.09 2.26 5.70 36.00 0.21 2.46 15 10 S -0.27 -5.81 21.64 -107.50 -2.33 -8.14 15 11 C -0.01 -0.18 6.57 36.00 0.24 0.06 15 12 C 0.20 3.48 7.74 -12.94 -0.10 3.38 15 13 N -0.28 -5.13 12.22 32.55 0.40 -4.73 15 14 N -0.29 -4.81 11.84 32.55 0.39 -4.42 15 15 C 0.18 2.69 8.00 -12.94 -0.10 2.58 15 16 C -0.08 -0.78 6.33 -91.73 -0.58 -1.36 15 17 C -0.15 -1.10 10.23 -26.73 -0.27 -1.38 15 18 C -0.14 -1.10 10.15 -26.70 -0.27 -1.37 15 19 O -0.22 -3.53 10.87 5.40 0.06 -3.47 15 20 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 21 H 0.04 1.04 8.14 -51.92 -0.42 0.62 15 22 H 0.04 1.09 8.14 -51.92 -0.42 0.67 15 23 H 0.11 1.62 8.14 -51.92 -0.42 1.20 15 24 H 0.12 1.92 8.14 -51.92 -0.42 1.50 15 25 H 0.14 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.11 0.53 8.14 -51.93 -0.42 0.10 15 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.11 1.01 7.92 -51.92 -0.41 0.60 15 29 H 0.11 0.57 8.14 -51.93 -0.42 0.15 15 LS Contribution 279.10 15.07 4.21 4.21 Total: -1.00 -30.92 279.10 -6.19 -37.11 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -3.33 Total: -3.63 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.30 Total: -8.41 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 1.52 Total: -33.71 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: 0.06 Total: -3.47 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -5.81 SS G_CDS: -2.33 Total: -8.14 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.92 -6.19 -37.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190298.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.400 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds