Wall clock time and date at job start Thu Apr 9 2020 12:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86811 * 119.99460 * 2 1 4 4 H 1.48500 * 109.46917 * 270.00217 * 3 2 1 5 5 H 1.48507 * 109.46810 * 29.99727 * 3 2 1 6 6 H 1.48493 * 109.47280 * 150.00035 * 3 2 1 7 7 C 1.37872 * 120.00944 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00515 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99565 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47315 * 180.02562 * 9 7 2 11 11 C 1.81397 * 103.00493 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47425 * 180.02562 * 11 10 9 13 13 N 1.30275 * 126.28506 * 89.99677 * 12 11 10 14 14 N 1.28664 * 109.38152 * 179.73391 * 13 12 11 15 15 C 1.30270 * 109.38100 * 0.44292 * 14 13 12 16 16 C 1.50706 * 126.28141 * 179.82649 * 15 14 13 17 17 C 1.53002 * 117.49668 * 59.69285 * 16 15 14 18 18 C 1.53000 * 60.02940 * 252.51929 * 17 16 15 19 19 O 1.34358 * 126.28173 * 269.99844 * 12 11 10 20 20 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47316 * 60.00083 * 9 7 2 22 22 H 1.09000 * 109.47350 * 300.00241 * 9 7 2 23 23 H 1.09000 * 109.47564 * 59.99713 * 11 10 9 24 24 H 1.09001 * 109.47022 * 299.99808 * 11 10 9 25 25 H 1.09000 * 115.55924 * 205.37690 * 16 15 14 26 26 H 1.09002 * 117.49918 * 145.01964 * 17 16 15 27 27 H 1.09002 * 117.49754 * 0.02562 * 17 16 15 28 28 H 1.09008 * 117.49673 * 107.47884 * 18 17 16 29 29 H 1.08999 * 117.49942 * 252.47315 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6528 0.7000 6 1 3.5466 1.4405 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0001 9 6 1.2513 -2.4990 -0.0005 10 16 2.4302 -3.8777 -0.0005 11 6 1.3521 -5.3366 -0.0013 12 6 2.1962 -6.5850 -0.0008 13 7 2.6273 -7.2237 1.0496 14 7 3.3124 -8.2467 0.6760 15 6 3.3495 -8.2902 -0.6254 16 6 4.0516 -9.3276 -1.4634 17 6 3.6180 -10.7850 -1.2929 18 6 4.9665 -10.3191 -0.7403 19 8 2.6422 -7.2437 -1.0835 20 1 -0.4851 0.8399 0.0004 21 1 0.6243 -2.5567 -0.8903 22 1 0.6250 -2.5571 0.8896 23 1 0.7232 -5.3232 -0.8915 24 1 0.7227 -5.3237 0.8885 25 1 4.3481 -9.0042 -2.4612 26 1 3.6293 -11.4204 -2.1785 27 1 2.8247 -10.9933 -0.5749 28 1 5.0604 -10.2206 0.3412 29 1 5.8651 -10.6483 -1.2622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641190298.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:33 Heat of formation + Delta-G solvation = 34.120525 kcal Electronic energy + Delta-G solvation = -13891.476225 eV Core-core repulsion = 11328.821226 eV Total energy + Delta-G solvation = -2562.654999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.42732 -38.39650 -37.35262 -35.31818 -33.87576 -30.74305 -29.61085 -25.99951 -25.30756 -23.80185 -23.29459 -22.31599 -18.95991 -18.61070 -18.43873 -17.42702 -16.85969 -16.41316 -16.10542 -15.56307 -15.06665 -14.70743 -14.35475 -14.04298 -13.64714 -13.58430 -13.10853 -12.75357 -12.72203 -12.46014 -12.43207 -12.22169 -11.97450 -11.64203 -11.59168 -10.94497 -10.75683 -10.35486 -8.66638 -8.35199 -6.48226 -0.32649 0.66220 1.00483 1.36822 1.41637 1.42058 1.54168 1.78854 2.36179 2.56263 2.75354 3.00128 3.22596 3.51103 3.77202 3.92344 3.94188 4.06640 4.22629 4.37741 4.53177 4.73918 4.87468 4.91383 4.92577 5.05343 5.20674 5.54916 5.84538 6.57943 7.08424 7.19846 8.76362 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.069669 B = 0.004008 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.804684 B = 6984.196830 C = 7114.485881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.096 3.904 10 S -0.287 6.287 11 C 0.005 3.995 12 C 0.187 3.813 13 N -0.297 5.297 14 N -0.315 5.315 15 C 0.201 3.799 16 C -0.107 4.107 17 C -0.135 4.135 18 C -0.137 4.137 19 O -0.222 6.222 20 H 0.272 0.728 21 H 0.029 0.971 22 H 0.027 0.973 23 H 0.132 0.868 24 H 0.136 0.864 25 H 0.161 0.839 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 -18.938 -5.254 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.051 4.051 10 S -0.062 6.062 11 C -0.143 4.143 12 C -0.025 4.025 13 N -0.145 5.145 14 N -0.161 5.161 15 C -0.010 4.010 16 C -0.127 4.127 17 C -0.173 4.173 18 C -0.174 4.174 19 O -0.101 6.101 20 H 0.081 0.919 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.150 0.850 24 H 0.154 0.846 25 H 0.178 0.822 26 H 0.162 0.838 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.633 -19.110 -3.996 20.619 hybrid contribution -1.469 1.467 -0.954 2.285 sum 5.164 -17.643 -4.950 19.038 Atomic orbital electron populations 1.70024 1.07474 1.28709 1.49683 1.25839 0.95901 1.02794 0.93725 0.85290 0.78411 0.77645 0.78785 1.19340 1.19957 1.19294 1.20919 0.93441 0.90085 1.53408 0.92148 1.20874 0.93726 0.91247 0.99240 1.86984 1.20030 1.00995 1.98176 1.21627 0.96772 0.86156 1.09746 1.26959 0.98964 0.96967 0.79623 1.74370 1.11020 1.03076 1.25997 1.74264 1.17134 1.14426 1.10252 1.27807 0.93275 0.88833 0.91047 1.20619 1.05712 0.86628 0.99722 1.23312 0.98415 0.90802 1.04737 1.23292 0.95701 0.97190 1.01210 1.84768 1.53304 1.34175 1.37888 0.91926 0.95234 0.95459 0.85011 0.84619 0.82151 0.83792 0.89108 0.88786 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.59 13.29 21.45 0.28 -52.31 15 2 C 0.02 1.04 5.46 84.65 0.46 1.50 15 3 Si 0.98 43.05 29.54 68.60 2.03 45.08 15 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 7 C -0.54 -30.24 9.13 25.60 0.23 -30.01 15 8 H 0.06 3.41 7.71 -2.91 -0.02 3.38 15 9 C 0.10 4.93 5.70 71.24 0.41 5.33 15 10 S -0.29 -12.55 21.64 -56.49 -1.22 -13.78 15 11 C 0.01 0.18 6.57 71.24 0.47 0.65 15 12 C 0.19 6.44 7.74 88.34 0.68 7.13 15 13 N -0.30 -11.02 12.22 -165.51 -2.02 -13.05 15 14 N -0.31 -10.52 11.84 -165.50 -1.96 -12.48 15 15 C 0.20 5.64 8.00 88.34 0.71 6.34 15 16 C -0.11 -1.79 6.33 -11.51 -0.07 -1.86 15 17 C -0.13 -1.52 10.23 30.60 0.31 -1.21 15 18 C -0.14 -1.70 10.15 30.62 0.31 -1.39 15 19 O -0.22 -7.05 10.87 -3.60 -0.04 -7.09 15 20 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 21 H 0.03 1.54 8.14 -2.39 -0.02 1.52 15 22 H 0.03 1.44 8.14 -2.39 -0.02 1.42 15 23 H 0.13 3.79 8.14 -2.39 -0.02 3.77 15 24 H 0.14 4.19 8.14 -2.39 -0.02 4.17 15 25 H 0.16 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.14 0.71 8.14 -2.39 -0.02 0.69 15 27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 15 28 H 0.09 1.57 7.92 -2.38 -0.02 1.55 15 29 H 0.14 0.90 8.14 -2.39 -0.02 0.88 15 Total: -1.00 -67.19 279.10 1.73 -65.46 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.15 Total: 1.67 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 3.51 Total: -13.52 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -3.70 Total: -77.83 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.04 Total: -7.09 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -12.55 SS G_CDS: -1.22 Total: -13.78 kcal Total: -67.19 1.73 -65.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190298.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.581 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds