Wall clock time and date at job start Thu Apr 9 2020 12:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99913 * 2 1 4 4 H 1.48503 * 109.46972 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46904 * 299.99963 * 3 2 1 6 6 H 1.48493 * 109.47273 * 60.00182 * 3 2 1 7 7 C 1.37880 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99636 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47058 * 299.99776 * 9 7 2 11 11 O 1.42894 * 109.47699 * 59.99977 * 9 7 2 12 12 C 1.53005 * 109.46862 * 180.02562 * 9 7 2 13 13 S 1.81398 * 109.47241 * 179.97438 * 12 9 7 14 14 C 1.76197 * 103.00407 * 179.97438 * 13 12 9 15 15 C 1.39039 * 120.04997 * 0.02562 * 14 13 12 16 16 C 1.38087 * 120.03216 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.13244 * 359.70665 * 16 15 14 18 18 C 1.38785 * 120.10320 * 0.55252 * 17 16 15 19 19 O 1.35905 * 120.01653 * 179.75018 * 18 17 16 20 20 C 1.38592 * 119.97104 * 359.46553 * 18 17 16 21 21 H 0.97001 * 120.00127 * 359.97438 * 1 2 3 22 22 H 0.96702 * 113.99690 * 59.99684 * 11 9 7 23 23 H 1.09003 * 109.47339 * 59.99663 * 12 9 7 24 24 H 1.08997 * 109.47027 * 299.99883 * 12 9 7 25 25 H 1.08004 * 119.98288 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.93776 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.94770 * 180.27464 * 17 16 15 28 28 H 0.96705 * 113.99576 * 269.71979 * 19 18 17 29 29 H 1.07997 * 120.07307 * 180.27434 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5570 0.8897 11 8 0.4290 -2.5746 -1.1669 12 6 2.2454 -3.6620 -0.0005 13 16 1.3384 -5.2330 0.0002 14 6 2.6270 -6.4347 -0.0006 15 6 3.9570 -6.0294 -0.0011 16 6 4.9666 -6.9715 -0.0012 17 6 4.6583 -8.3190 0.0052 18 6 3.3327 -8.7298 0.0003 19 8 3.0316 -10.0551 0.0015 20 6 2.3160 -7.7880 0.0000 21 1 -0.4850 0.8400 0.0004 22 1 0.9209 -2.5291 -1.9983 23 1 2.8721 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 4.2006 -4.9772 -0.0013 26 1 5.9992 -6.6550 -0.0020 27 1 5.4503 -9.0533 0.0096 28 1 2.9441 -10.4393 -0.8816 29 1 1.2838 -8.1059 0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651914667.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:44 Heat of formation + Delta-G solvation = -75.626740 kcal Electronic energy + Delta-G solvation = -14179.117966 eV Core-core repulsion = 11579.411217 eV Total energy + Delta-G solvation = -2599.706749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.53191 -36.66443 -35.98349 -32.24818 -30.98824 -30.33527 -29.27487 -25.46917 -22.96844 -22.49100 -21.00723 -18.69472 -17.28711 -16.59029 -15.96125 -15.58479 -14.85626 -14.71544 -14.43090 -14.13840 -13.85236 -13.52347 -12.65198 -12.50618 -12.24230 -11.60836 -11.56754 -11.25982 -10.99686 -10.98187 -10.57167 -10.13815 -9.75894 -9.56542 -9.21106 -8.74264 -8.69873 -8.36606 -7.02767 -6.13294 -4.33935 1.18934 1.30229 1.95474 2.98321 3.20221 3.28904 3.31545 3.56878 4.17413 4.29736 4.89075 5.08159 5.13832 5.23093 5.49012 5.67991 5.68666 5.85299 5.86115 6.14804 6.29604 6.35732 6.41519 6.53566 6.70297 7.49642 7.56468 7.68981 7.96408 8.67522 9.23520 9.43206 10.90731 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.052647 B = 0.004970 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.719388 B = 5632.065963 C = 6074.849067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.572 4.572 8 H 0.059 0.941 9 C 0.246 3.754 10 H 0.067 0.933 11 O -0.556 6.556 12 C -0.122 4.122 13 S -0.104 6.104 14 C -0.064 4.064 15 C -0.147 4.147 16 C -0.084 4.084 17 C -0.164 4.164 18 C 0.118 3.882 19 O -0.500 6.500 20 C -0.135 4.135 21 H 0.263 0.737 22 H 0.347 0.653 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.389 0.611 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.825 -13.570 -1.966 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.127 4.127 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.612 4.612 8 H 0.077 0.923 9 C 0.186 3.814 10 H 0.084 0.916 11 O -0.359 6.359 12 C -0.270 4.270 13 S 0.144 5.856 14 C -0.177 4.177 15 C -0.171 4.171 16 C -0.104 4.104 17 C -0.186 4.186 18 C 0.073 3.927 19 O -0.310 6.310 20 C -0.160 4.160 21 H 0.073 0.927 22 H 0.191 0.809 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.244 0.756 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.892 -13.479 -0.886 14.737 hybrid contribution 2.398 1.034 -0.819 2.737 sum 8.290 -12.444 -1.705 15.050 Atomic orbital electron populations 1.70086 1.05978 1.26717 1.46170 1.25044 0.94771 0.99274 0.93567 0.86523 0.80099 0.83384 0.77839 1.19640 1.20730 1.20720 1.21530 0.93214 0.90589 1.55825 0.92254 1.19192 0.87462 0.87663 0.87066 0.91577 1.86610 1.38001 1.96047 1.15215 1.24973 1.03460 0.94114 1.04488 1.85957 1.10605 0.98924 1.90084 1.22068 0.97559 0.97302 1.00819 1.21344 0.91623 1.00434 1.03733 1.20921 0.99090 0.92255 0.98107 1.21306 0.95675 0.96409 1.05242 1.18295 0.91656 0.82885 0.99912 1.84814 1.92659 1.20048 1.33483 1.20983 0.99652 0.90912 1.04447 0.92740 0.80886 0.89822 0.90356 0.85283 0.85554 0.85666 0.75561 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.65 12.84 55.43 0.71 -23.94 15 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 15 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.57 -15.05 8.76 -34.44 -0.30 -15.35 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.25 6.02 2.87 -27.88 -0.08 5.94 15 10 H 0.07 1.80 8.14 -51.93 -0.42 1.38 15 11 O -0.56 -13.94 12.33 -35.23 -0.43 -14.38 15 12 C -0.12 -2.40 3.97 37.16 0.15 -2.25 15 13 S -0.10 -1.92 21.56 -107.50 -2.32 -4.24 15 14 C -0.06 -1.02 6.11 -39.06 -0.24 -1.26 15 15 C -0.15 -2.16 9.36 -39.34 -0.37 -2.52 15 16 C -0.08 -1.04 10.03 -39.64 -0.40 -1.43 15 17 C -0.16 -1.97 9.98 -39.38 -0.39 -2.36 15 18 C 0.12 1.54 6.70 -39.25 -0.26 1.27 15 19 O -0.50 -5.53 13.50 -19.44 -0.26 -5.79 15 20 C -0.13 -1.97 9.73 -39.22 -0.38 -2.35 15 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.35 7.68 9.04 45.56 0.41 8.09 15 23 H 0.08 1.58 7.75 -51.92 -0.40 1.18 15 24 H 0.08 1.45 7.75 -51.93 -0.40 1.05 15 25 H 0.13 1.87 5.87 -52.48 -0.31 1.56 15 26 H 0.13 1.23 8.06 -52.49 -0.42 0.80 15 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 15 28 H 0.39 2.32 9.06 45.56 0.41 2.73 15 29 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 LS Contribution 271.85 15.07 4.10 4.10 Total: -1.00 -30.73 271.85 -7.12 -37.85 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -1.52 Total: 9.16 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.37 Total: -18.24 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.71 Total: -23.94 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.70 Total: -20.17 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -1.92 SS G_CDS: -2.32 Total: -4.24 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.73 -7.12 -37.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651914667.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.780 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds