Wall clock time and date at job start Thu Apr 9 2020 12:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99913 * 2 1 4 4 H 1.48503 * 109.46972 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46904 * 299.99963 * 3 2 1 6 6 H 1.48493 * 109.47273 * 60.00182 * 3 2 1 7 7 C 1.37880 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99636 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47058 * 299.99776 * 9 7 2 11 11 O 1.42894 * 109.47699 * 59.99977 * 9 7 2 12 12 C 1.53005 * 109.46862 * 180.02562 * 9 7 2 13 13 S 1.81398 * 109.47241 * 179.97438 * 12 9 7 14 14 C 1.76197 * 103.00407 * 179.97438 * 13 12 9 15 15 C 1.39039 * 120.04997 * 0.02562 * 14 13 12 16 16 C 1.38087 * 120.03216 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.13244 * 359.70665 * 16 15 14 18 18 C 1.38785 * 120.10320 * 0.55252 * 17 16 15 19 19 O 1.35905 * 120.01653 * 179.75018 * 18 17 16 20 20 C 1.38592 * 119.97104 * 359.46553 * 18 17 16 21 21 H 0.97001 * 120.00127 * 359.97438 * 1 2 3 22 22 H 0.96702 * 113.99690 * 59.99684 * 11 9 7 23 23 H 1.09003 * 109.47339 * 59.99663 * 12 9 7 24 24 H 1.08997 * 109.47027 * 299.99883 * 12 9 7 25 25 H 1.08004 * 119.98288 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.93776 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.94770 * 180.27464 * 17 16 15 28 28 H 0.96705 * 113.99576 * 269.71979 * 19 18 17 29 29 H 1.07997 * 120.07307 * 180.27434 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5570 0.8897 11 8 0.4290 -2.5746 -1.1669 12 6 2.2454 -3.6620 -0.0005 13 16 1.3384 -5.2330 0.0002 14 6 2.6270 -6.4347 -0.0006 15 6 3.9570 -6.0294 -0.0011 16 6 4.9666 -6.9715 -0.0012 17 6 4.6583 -8.3190 0.0052 18 6 3.3327 -8.7298 0.0003 19 8 3.0316 -10.0551 0.0015 20 6 2.3160 -7.7880 0.0000 21 1 -0.4850 0.8400 0.0004 22 1 0.9209 -2.5291 -1.9983 23 1 2.8721 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 4.2006 -4.9772 -0.0013 26 1 5.9992 -6.6550 -0.0020 27 1 5.4503 -9.0533 0.0096 28 1 2.9441 -10.4393 -0.8816 29 1 1.2838 -8.1059 0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651914667.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:44 Heat of formation + Delta-G solvation = -98.249211 kcal Electronic energy + Delta-G solvation = -14180.098950 eV Core-core repulsion = 11579.411217 eV Total energy + Delta-G solvation = -2600.687733 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52547 -37.93831 -37.60081 -34.31096 -32.04886 -31.88929 -30.57329 -27.40850 -24.14829 -23.57365 -22.73638 -19.69306 -19.27860 -17.68873 -17.17702 -16.72282 -16.63858 -16.25218 -16.13837 -15.68255 -15.27491 -14.64856 -14.13122 -13.86931 -13.38319 -13.30278 -13.11518 -12.83260 -12.80566 -12.49622 -12.05721 -11.66443 -11.33468 -10.93063 -10.74581 -10.68062 -10.31987 -9.76912 -8.40956 -8.18428 -6.46118 0.14354 0.26624 0.56831 1.40716 1.42153 1.54082 1.56934 2.37864 2.56586 3.08336 3.27584 3.89971 4.05281 4.11549 4.13415 4.20832 4.28645 4.50138 4.66686 4.82972 4.90311 5.21515 5.35723 5.39750 5.49282 5.62855 5.77101 5.94261 6.64053 6.83324 7.27139 7.45472 8.86514 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.052647 B = 0.004970 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.719388 B = 5632.065963 C = 6074.849067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.026 3.974 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.582 4.582 8 H 0.068 0.932 9 C 0.245 3.755 10 H 0.027 0.973 11 O -0.572 6.572 12 C -0.102 4.102 13 S -0.140 6.140 14 C -0.078 4.078 15 C -0.160 4.160 16 C -0.078 4.078 17 C -0.155 4.155 18 C 0.123 3.877 19 O -0.505 6.505 20 C -0.149 4.149 21 H 0.263 0.737 22 H 0.359 0.641 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.127 0.873 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.413 0.587 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.417 -14.672 -2.291 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.622 4.622 8 H 0.086 0.914 9 C 0.186 3.814 10 H 0.045 0.955 11 O -0.376 6.376 12 C -0.250 4.250 13 S 0.106 5.894 14 C -0.191 4.191 15 C -0.184 4.184 16 C -0.098 4.098 17 C -0.176 4.176 18 C 0.077 3.923 19 O -0.319 6.319 20 C -0.173 4.173 21 H 0.072 0.928 22 H 0.204 0.796 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.144 0.856 26 H 0.176 0.824 27 H 0.174 0.826 28 H 0.272 0.728 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.514 -14.613 -1.231 16.957 hybrid contribution 1.631 1.160 -0.729 2.129 sum 10.145 -13.453 -1.960 16.963 Atomic orbital electron populations 1.70229 1.07810 1.27632 1.47846 1.25949 0.95517 1.03121 0.93139 0.85406 0.79181 0.78678 0.77682 1.18346 1.20474 1.20584 1.21930 0.93766 0.91559 1.54897 0.91364 1.18949 0.87419 0.89415 0.85592 0.95496 1.86550 1.38884 1.96235 1.15947 1.24503 1.01995 0.93281 1.05244 1.85944 1.12600 0.99452 1.91390 1.21925 0.97046 0.96794 1.03368 1.21466 0.91570 1.01031 1.04344 1.21272 0.99995 0.91988 0.96518 1.21683 0.95922 0.96925 1.03076 1.18347 0.91688 0.83331 0.98937 1.84761 1.92576 1.18875 1.35658 1.21084 1.00338 0.90794 1.05104 0.92769 0.79617 0.89337 0.89170 0.85561 0.82398 0.82587 0.72788 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.03 12.84 21.45 0.28 -52.76 15 2 C 0.03 1.41 5.40 84.66 0.46 1.87 15 3 Si 0.97 42.10 29.54 68.60 2.03 44.13 15 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 7 C -0.58 -30.83 8.76 25.60 0.22 -30.61 15 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 15 9 C 0.25 12.37 2.87 29.85 0.09 12.45 15 10 H 0.03 1.56 8.14 -2.38 -0.02 1.54 15 11 O -0.57 -29.51 12.33 -148.98 -1.84 -31.35 15 12 C -0.10 -4.06 3.97 71.98 0.29 -3.77 15 13 S -0.14 -5.30 21.56 -56.49 -1.22 -6.52 15 14 C -0.08 -2.46 6.11 22.61 0.14 -2.32 15 15 C -0.16 -4.43 9.36 22.43 0.21 -4.22 15 16 C -0.08 -1.66 10.03 22.23 0.22 -1.44 15 17 C -0.15 -3.10 9.98 22.40 0.22 -2.88 15 18 C 0.12 2.86 6.70 22.49 0.15 3.01 15 19 O -0.51 -9.63 13.50 -92.48 -1.25 -10.88 15 20 C -0.15 -4.19 9.73 22.50 0.22 -3.97 15 21 H 0.26 14.64 8.31 -92.71 -0.77 13.87 15 22 H 0.36 16.19 9.04 -74.06 -0.67 15.52 15 23 H 0.09 3.37 7.75 -2.39 -0.02 3.35 15 24 H 0.09 3.32 7.75 -2.39 -0.02 3.30 15 25 H 0.13 3.50 5.87 -2.91 -0.02 3.48 15 26 H 0.16 2.34 8.06 -2.91 -0.02 2.32 15 27 H 0.16 2.19 8.06 -2.91 -0.02 2.17 15 28 H 0.41 3.56 9.06 -74.05 -0.67 2.89 15 29 H 0.13 3.56 8.06 -2.91 -0.02 3.54 15 Total: -1.00 -66.51 271.85 0.06 -66.45 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.16 Total: 22.79 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 2.22 Total: -31.87 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.28 Total: -52.76 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -3.09 Total: -42.22 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -1.22 Total: -6.52 kcal Total: -66.51 0.06 -66.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651914667.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.797 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds