Wall clock time and date at job start Thu Apr 9 2020 12:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38306 * 120.35873 * 2 1 4 4 N 1.31895 * 121.03431 * 179.97438 * 3 2 1 5 5 C 1.31743 * 121.84738 * 359.97438 * 4 3 2 6 6 C 1.39307 * 120.60096 * 0.02562 * 5 4 3 7 7 C 1.48359 * 120.54027 * 179.97438 * 6 5 4 8 8 C 1.38901 * 119.61548 * 4.98003 * 7 6 5 9 9 C 1.40848 * 118.76728 * 179.97438 * 8 7 6 10 10 C 1.41521 * 120.98686 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00292 * 336.12381 * 10 9 8 12 12 C 1.40050 * 119.99930 * 156.12267 * 10 9 8 13 13 N 1.30730 * 119.99701 * 343.15988 * 12 10 9 14 14 Si 1.86797 * 120.00091 * 163.15911 * 12 10 9 15 15 H 1.48500 * 109.47227 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47147 * 119.99959 * 14 12 10 17 17 H 1.48498 * 109.47238 * 239.99978 * 14 12 10 18 18 C 1.41140 * 118.02254 * 359.97438 * 9 8 7 19 19 C 1.37736 * 119.07424 * 0.02562 * 18 9 8 20 20 N 1.31916 * 121.15674 * 359.97438 * 19 18 9 21 21 C 1.38414 * 120.35625 * 180.21663 * 2 1 3 22 22 H 1.09001 * 109.47053 * 89.99638 * 1 2 3 23 23 H 1.09000 * 109.46816 * 209.99639 * 1 2 3 24 24 H 1.08996 * 109.46605 * 329.99725 * 1 2 3 25 25 H 1.08006 * 119.48716 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.69676 * 180.02562 * 5 4 3 27 27 H 1.08004 * 120.61615 * 359.97240 * 8 7 6 28 28 H 0.96999 * 119.99614 * 180.02562 * 13 12 10 29 29 H 1.08007 * 120.46019 * 179.97438 * 18 9 8 30 30 H 1.07997 * 119.42263 * 180.25315 * 19 18 9 31 31 H 1.07997 * 120.84811 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1934 0.0000 4 7 3.5250 1.2090 0.0005 5 6 4.2333 0.0981 0.0015 6 6 3.6035 -1.1445 0.0016 7 6 4.4025 -2.3945 0.0022 8 6 5.7857 -2.3250 0.1075 9 6 6.5266 -3.5229 0.1068 10 6 7.9379 -3.5068 0.2112 11 1 8.4915 -2.6291 -0.0878 12 6 8.6166 -4.6292 0.7021 13 7 7.9648 -5.5497 1.3631 14 14 10.4530 -4.8109 0.4126 15 1 10.9511 -3.6417 -0.3557 16 1 11.1557 -4.8798 1.7190 17 1 10.7124 -6.0552 -0.3552 18 6 5.8197 -4.7398 -0.0011 19 6 4.4463 -4.7094 -0.1011 20 7 3.7868 -3.5669 -0.0970 21 6 2.2066 -1.1944 -0.0045 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3632 0.8899 0.5139 25 1 1.6636 2.1273 -0.0004 26 1 5.3120 0.1514 0.0023 27 1 6.2839 -1.3702 0.1884 28 1 8.4349 -6.3269 1.7035 29 1 6.3484 -5.6815 -0.0060 30 1 3.8995 -5.6373 -0.1798 31 1 1.6864 -2.1408 -0.0085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240801477.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:35 Heat of formation + Delta-G solvation = 44.824111 kcal Electronic energy + Delta-G solvation = -15648.954812 eV Core-core repulsion = 13087.153098 eV Total energy + Delta-G solvation = -2561.801714 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88955 -38.18162 -34.32459 -33.35589 -32.36875 -30.83718 -28.58742 -27.10487 -26.01339 -23.46438 -22.65973 -21.03083 -20.35823 -17.55383 -16.61811 -16.06594 -15.54596 -14.77080 -14.45983 -14.08998 -14.03590 -13.30019 -12.96264 -12.84065 -12.64694 -12.50882 -12.30330 -12.24778 -11.56919 -11.42312 -11.07097 -11.02093 -10.37674 -10.02312 -9.59517 -9.40439 -9.10487 -8.75324 -8.17424 -8.11676 -7.33334 -6.94791 -4.69791 1.22977 1.63533 2.65174 2.83063 2.98059 3.03445 3.17038 3.78859 4.18341 4.60689 4.73691 5.01520 5.06517 5.32412 5.37435 5.48524 5.56449 5.64260 5.84202 5.89662 6.11895 6.15736 6.51626 6.53956 6.69110 6.78843 6.90216 7.00766 7.07593 7.24240 7.34404 7.74495 7.96486 8.31063 8.34877 8.61578 8.63765 9.43354 9.97045 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.044130 B = 0.005408 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.341676 B = 5176.290079 C = 5728.232258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.148 4.148 3 C 0.079 3.921 4 N -0.485 5.485 5 C 0.097 3.903 6 C -0.055 4.055 7 C 0.151 3.849 8 C -0.248 4.248 9 C 0.126 3.874 10 C -0.453 4.453 11 H 0.084 0.916 12 C 0.077 3.923 13 N -0.784 5.784 14 Si 0.913 3.087 15 H -0.258 1.258 16 H -0.272 1.272 17 H -0.270 1.270 18 C -0.207 4.207 19 C 0.088 3.912 20 N -0.564 5.564 21 C -0.054 4.054 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.147 0.853 26 H 0.159 0.841 27 H 0.106 0.894 28 H 0.284 0.716 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 4.901 -1.567 8.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.150 4.150 3 C -0.079 4.079 4 N -0.192 5.192 5 C -0.061 4.061 6 C -0.058 4.058 7 C 0.017 3.983 8 C -0.271 4.271 9 C 0.118 3.882 10 C -0.484 4.484 11 H 0.102 0.898 12 C -0.143 4.143 13 N -0.409 5.409 14 Si 0.737 3.263 15 H -0.182 1.182 16 H -0.198 1.198 17 H -0.195 1.195 18 C -0.229 4.229 19 C -0.064 4.064 20 N -0.279 5.279 21 C -0.080 4.080 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.165 0.835 26 H 0.176 0.824 27 H 0.124 0.876 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.928 5.446 -1.504 8.940 hybrid contribution 1.406 -1.128 0.095 1.805 sum -5.522 4.318 -1.409 7.150 Atomic orbital electron populations 1.20665 0.90645 1.02696 1.02198 1.20862 0.97275 0.94222 1.02675 1.22533 0.90181 0.97037 0.98100 1.67627 1.07971 1.31296 1.12338 1.22924 1.00444 0.86779 0.95947 1.19831 0.93538 0.93638 0.98797 1.18921 0.90097 0.90062 0.99246 1.21860 0.92920 0.98486 1.13880 1.17769 0.93593 0.90522 0.86332 1.19661 0.91267 1.00270 1.37226 0.89793 1.25991 1.01546 0.94590 0.92130 1.69764 1.38878 1.08594 1.23641 0.86177 0.81347 0.79610 0.79198 1.18153 1.19759 1.19488 1.22286 0.93911 0.99836 1.06879 1.21950 0.92227 0.94311 0.97947 1.67222 1.40672 0.97470 1.22537 1.21641 0.93433 0.98180 0.94776 0.91288 0.91459 0.91589 0.83525 0.82399 0.87578 0.90484 0.85453 0.85882 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.03 36.01 0.36 -0.75 16 2 C -0.15 -2.18 5.89 -104.53 -0.62 -2.80 16 3 C 0.08 1.18 10.85 -17.50 -0.19 0.99 16 4 N -0.48 -8.48 10.35 -12.97 -0.13 -8.61 16 5 C 0.10 1.80 10.58 -17.19 -0.18 1.62 16 6 C -0.06 -1.10 5.89 -104.76 -0.62 -1.72 16 7 C 0.15 3.48 6.72 -83.04 -0.56 2.92 16 8 C -0.25 -5.95 9.25 -38.35 -0.35 -6.30 16 9 C 0.13 3.24 5.60 -106.56 -0.60 2.64 16 10 C -0.45 -11.47 9.12 -37.65 -0.34 -11.81 16 11 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 12 C 0.08 1.84 5.20 -17.34 -0.09 1.75 16 13 N -0.78 -19.24 10.92 55.55 0.61 -18.63 16 14 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 15 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 18 C -0.21 -5.19 8.79 -38.66 -0.34 -5.53 16 19 C 0.09 2.05 11.15 -17.70 -0.20 1.86 16 20 N -0.56 -13.30 9.48 -9.95 -0.09 -13.39 16 21 C -0.05 -0.95 9.37 -38.94 -0.36 -1.32 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 24 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.15 1.70 8.06 -52.48 -0.42 1.27 16 26 H 0.16 2.78 6.23 -52.48 -0.33 2.45 16 27 H 0.11 2.32 6.24 -52.48 -0.33 2.00 16 28 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 29 H 0.13 3.23 6.20 -52.48 -0.33 2.91 16 30 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 31 H 0.14 2.47 7.63 -52.49 -0.40 2.07 16 LS Contribution 273.05 15.07 4.11 4.11 Total: -1.00 -27.76 273.05 -7.66 -35.42 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.04 Total: 6.88 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -4.09 Total: -18.44 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.38 Total: -40.63 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.76 -7.66 -35.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240801477.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.248 kcal (2) G-P(sol) polarization free energy of solvation -27.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds