Wall clock time and date at job start Thu Apr 9 2020 12:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38327 * 120.35317 * 2 1 4 4 N 1.31900 * 121.03491 * 180.02562 * 3 2 1 5 5 C 1.31730 * 121.86038 * 359.97438 * 4 3 2 6 6 C 1.39348 * 120.59109 * 359.97438 * 5 4 3 7 7 C 1.48309 * 120.54579 * 180.02562 * 6 5 4 8 8 C 1.39908 * 119.60472 * 5.02415 * 7 6 5 9 9 C 1.38686 * 119.46326 * 180.02562 * 8 7 6 10 10 C 1.38293 * 118.68973 * 359.74281 * 9 8 7 11 11 C 1.40678 * 119.18650 * 0.47981 * 10 9 8 12 12 C 1.41376 * 119.76925 * 179.79399 * 11 10 9 13 13 H 1.08002 * 120.00030 * 359.85010 * 12 11 10 14 14 C 1.40013 * 120.00276 * 179.84783 * 12 11 10 15 15 N 1.30746 * 119.99954 * 177.73314 * 14 12 11 16 16 Si 1.86798 * 119.99976 * 357.46057 * 14 12 11 17 17 H 1.48502 * 109.47191 * 180.27456 * 16 14 12 18 18 H 1.48503 * 109.47178 * 300.27406 * 16 14 12 19 19 H 1.48498 * 109.47325 * 60.27319 * 16 14 12 20 20 N 1.32208 * 119.61143 * 184.99951 * 7 6 5 21 21 C 1.38397 * 120.35852 * 180.26784 * 2 1 3 22 22 H 1.08997 * 109.47366 * 89.99684 * 1 2 3 23 23 H 1.09001 * 109.47172 * 209.99765 * 1 2 3 24 24 H 1.09003 * 109.47325 * 329.99576 * 1 2 3 25 25 H 1.07998 * 119.48312 * 0.02562 * 3 2 1 26 26 H 1.07998 * 119.70687 * 179.97438 * 5 4 3 27 27 H 1.08004 * 120.26856 * 0.02562 * 8 7 6 28 28 H 1.07999 * 120.65304 * 179.97438 * 9 8 7 29 29 H 1.08005 * 120.40668 * 180.27037 * 10 9 8 30 30 H 0.96999 * 120.00319 * 354.34490 * 15 14 12 31 31 H 1.08002 * 120.84925 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1937 0.0000 4 7 3.5249 1.2094 -0.0005 5 6 4.2335 0.0989 -0.0005 6 6 3.6038 -1.1442 0.0005 7 6 4.4025 -2.3938 0.0011 8 6 5.7958 -2.3235 0.1070 9 6 6.5399 -3.4938 0.1067 10 6 5.8759 -4.7027 0.0063 11 6 4.4733 -4.7080 -0.1023 12 6 3.7823 -5.9367 -0.2100 13 1 4.3313 -6.8667 -0.2113 14 6 2.3861 -5.9478 -0.3151 15 7 1.7504 -7.0812 -0.4594 16 14 1.4311 -4.3441 -0.2416 17 1 -0.0212 -4.6265 -0.3686 18 1 1.6929 -3.6711 1.0560 19 1 1.8625 -3.4596 -1.3537 20 7 3.7896 -3.5610 -0.0981 21 6 2.2065 -1.1942 -0.0056 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6633 2.1274 0.0004 26 1 5.3122 0.1523 -0.0014 27 1 6.2879 -1.3655 0.1885 28 1 7.6164 -3.4618 0.1871 29 1 6.4276 -5.6312 0.0077 30 1 2.2486 -7.9053 -0.5759 31 1 1.6863 -2.1407 -0.0104 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240801761.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:38 Heat of formation + Delta-G solvation = 47.043440 kcal Electronic energy + Delta-G solvation = -16238.955327 eV Core-core repulsion = 13677.249851 eV Total energy + Delta-G solvation = -2561.705476 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06457 -38.52124 -34.12328 -33.44420 -32.64782 -31.28174 -29.36251 -27.20815 -25.64831 -23.82336 -22.55957 -21.38296 -20.16747 -18.45915 -17.23312 -16.12537 -15.62099 -15.05416 -14.65023 -14.20007 -14.15614 -13.36715 -13.08641 -13.05227 -12.78095 -12.48870 -12.34196 -12.06376 -11.98058 -11.32495 -10.86455 -10.84207 -10.11495 -9.88024 -9.68202 -9.21426 -9.17760 -8.91126 -8.68314 -7.84673 -7.68669 -7.35387 -4.90831 1.04935 1.53297 2.47860 2.62446 3.39821 3.52164 3.85310 4.06475 4.26141 4.56954 4.60890 4.90661 4.99718 5.22993 5.30560 5.34030 5.41911 5.64745 5.68181 5.83734 5.94588 6.08238 6.15402 6.31802 6.35803 6.45525 6.64481 6.76301 6.96675 7.14214 7.27151 7.35526 7.53651 7.94511 8.14475 8.20050 8.50157 9.27051 9.88856 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.010661 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.749189 B = 2625.762165 C = 3867.171321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.145 4.145 3 C 0.089 3.911 4 N -0.486 5.486 5 C 0.105 3.895 6 C -0.072 4.072 7 C 0.207 3.793 8 C -0.293 4.293 9 C -0.045 4.045 10 C -0.255 4.255 11 C 0.252 3.748 12 C -0.470 4.470 13 H 0.084 0.916 14 C 0.041 3.959 15 N -0.801 5.801 16 Si 1.149 2.851 17 H -0.329 1.329 18 H -0.286 1.286 19 H -0.281 1.281 20 N -0.566 5.566 21 C -0.061 4.061 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.152 0.848 26 H 0.160 0.840 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.285 0.715 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 10.448 0.654 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.147 4.147 3 C -0.069 4.069 4 N -0.194 5.194 5 C -0.053 4.053 6 C -0.075 4.075 7 C 0.067 3.933 8 C -0.317 4.317 9 C -0.069 4.069 10 C -0.277 4.277 11 C 0.128 3.872 12 C -0.502 4.502 13 H 0.102 0.898 14 C -0.181 4.181 15 N -0.422 5.422 16 Si 0.987 3.013 17 H -0.263 1.263 18 H -0.216 1.216 19 H -0.210 1.210 20 N -0.285 5.285 21 C -0.087 4.087 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.169 0.831 26 H 0.177 0.823 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.157 11.610 0.594 11.823 hybrid contribution 2.333 -1.813 0.047 2.955 sum 0.176 9.796 0.641 9.819 Atomic orbital electron populations 1.20739 0.90293 1.03096 1.02702 1.20911 0.97653 0.93963 1.02174 1.22599 0.90082 0.97080 0.97100 1.67633 1.08030 1.31075 1.12613 1.22856 1.00274 0.86558 0.95629 1.19811 0.93519 0.93636 1.00529 1.19127 0.90206 0.89819 0.94186 1.21077 0.93216 0.97915 1.19444 1.20920 0.98159 0.92630 0.95150 1.21700 0.95153 0.97044 1.13793 1.18544 0.89820 0.90635 0.88155 1.20796 0.94344 0.92648 1.42401 0.89750 1.27821 0.96430 1.05025 0.88817 1.70641 1.41180 1.00201 1.30163 0.82209 0.70030 0.70114 0.78963 1.26254 1.21583 1.20994 1.66238 1.38144 0.98063 1.26074 1.22213 0.93829 0.98918 0.93731 0.90805 0.91185 0.91154 0.83084 0.82318 0.87233 0.87417 0.87454 0.90415 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.03 36.01 0.36 -0.97 16 2 C -0.15 -2.29 5.89 -104.53 -0.62 -2.91 16 3 C 0.09 1.31 10.85 -17.49 -0.19 1.12 16 4 N -0.49 -8.08 10.35 -12.96 -0.13 -8.22 16 5 C 0.10 1.82 10.59 -17.18 -0.18 1.64 16 6 C -0.07 -1.46 5.89 -104.75 -0.62 -2.07 16 7 C 0.21 4.68 6.73 -82.94 -0.56 4.12 16 8 C -0.29 -5.92 9.48 -38.79 -0.37 -6.29 16 9 C -0.05 -0.91 10.15 -39.40 -0.40 -1.31 16 10 C -0.25 -5.81 9.83 -38.64 -0.38 -6.19 16 11 C 0.25 6.51 6.43 -85.01 -0.55 5.96 16 12 C -0.47 -12.65 9.58 -37.72 -0.36 -13.01 16 13 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 14 C 0.04 1.09 5.52 -17.35 -0.10 1.00 16 15 N -0.80 -21.57 13.65 55.55 0.76 -20.81 16 16 Si 1.15 28.10 21.97 -169.99 -3.73 24.37 16 17 H -0.33 -7.83 7.11 56.52 0.40 -7.43 16 18 H -0.29 -6.95 6.64 56.52 0.38 -6.58 16 19 H -0.28 -6.83 6.34 56.52 0.36 -6.47 16 20 N -0.57 -14.34 4.19 -7.68 -0.03 -14.37 16 21 C -0.06 -1.20 9.08 -38.93 -0.35 -1.56 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.86 8.10 -51.93 -0.42 0.43 16 24 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 25 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 26 H 0.16 2.39 6.22 -52.49 -0.33 2.07 16 27 H 0.11 1.85 6.23 -52.48 -0.33 1.52 16 28 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.11 2.27 8.06 -52.48 -0.42 1.85 16 30 H 0.28 7.29 8.73 -40.82 -0.36 6.94 16 31 H 0.14 2.99 2.24 -52.49 -0.12 2.87 16 LS Contribution 260.28 15.07 3.92 3.92 Total: -1.00 -28.89 260.28 -6.47 -35.36 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -2.95 Total: 0.22 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -4.31 Total: -20.47 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.59 Total: -43.40 kcal Atomic # 14 Polarization: 28.10 SS G_CDS: -3.73 Total: 24.37 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.89 -6.47 -35.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240801761.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.404 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds