Wall clock time and date at job start Thu Apr 9 2020 12:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86803 * 119.99914 * 2 1 4 4 H 1.48496 * 109.47287 * 275.36950 * 3 2 1 5 5 H 1.48506 * 109.47061 * 35.37199 * 3 2 1 6 6 H 1.48500 * 109.47107 * 155.36729 * 3 2 1 7 7 C 1.40074 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00383 * 342.49425 * 7 2 1 9 9 C 1.40882 * 119.99758 * 162.49718 * 7 2 1 10 10 C 1.40751 * 120.33140 * 329.33112 * 9 7 2 11 11 C 1.36440 * 119.98617 * 180.02562 * 10 9 7 12 12 C 1.38923 * 120.68441 * 359.97438 * 11 10 9 13 13 C 1.38089 * 120.67661 * 359.97438 * 12 11 10 14 14 C 1.39157 * 119.98042 * 0.30158 * 13 12 11 15 15 C 1.47878 * 120.33236 * 179.69360 * 14 13 12 16 16 C 1.39699 * 120.11704 * 130.00376 * 15 14 13 17 17 C 1.37933 * 119.95623 * 179.97438 * 16 15 14 18 18 C 1.38328 * 120.21145 * 359.97438 * 17 16 15 19 19 C 1.38865 * 120.24176 * 359.97438 * 18 17 16 20 20 O 1.35899 * 119.97743 * 179.97438 * 19 18 17 21 21 C 1.38455 * 120.03729 * 359.74543 * 19 18 17 22 22 H 0.96996 * 119.99560 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.00447 * 0.02562 * 10 9 7 24 24 H 1.07996 * 119.65594 * 179.97438 * 11 10 9 25 25 H 1.08004 * 119.65903 * 180.02562 * 12 11 10 26 26 H 1.07995 * 120.00775 * 180.02562 * 13 12 11 27 27 H 1.07997 * 120.02297 * 359.95192 * 16 15 14 28 28 H 1.08000 * 119.89639 * 180.02562 * 17 16 15 29 29 H 1.07995 * 119.87723 * 180.02562 * 18 17 16 30 30 H 0.96701 * 114.00061 * 90.00599 * 20 19 18 31 31 H 1.08003 * 120.10102 * 180.27706 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.3758 2.1120 -1.3939 5 1 1.5005 2.6173 0.8105 6 1 3.5914 1.4101 0.5836 7 6 2.0081 -1.2131 0.0005 8 1 1.5057 -2.1266 0.2823 9 6 3.3680 -1.2414 -0.3664 10 6 3.8717 -0.3164 -1.3000 11 6 5.1898 -0.3505 -1.6507 12 6 6.0472 -1.2917 -1.0948 13 6 5.5829 -2.2115 -0.1754 14 6 4.2424 -2.2056 0.1980 15 6 3.7354 -3.1914 1.1767 16 6 2.9787 -2.7668 2.2716 17 6 2.5071 -3.6892 3.1822 18 6 2.7802 -5.0349 3.0149 19 6 3.5306 -5.4665 1.9290 20 8 3.7962 -6.7898 1.7702 21 6 4.0042 -4.5499 1.0057 22 1 -0.4849 0.8400 0.0004 23 1 3.2150 0.4202 -1.7387 24 1 5.5706 0.3615 -2.3679 25 1 7.0877 -1.3035 -1.3840 26 1 6.2590 -2.9382 0.2503 27 1 2.7636 -1.7169 2.4052 28 1 1.9219 -3.3599 4.0280 29 1 2.4079 -5.7525 3.7309 30 1 3.1337 -7.2642 1.2495 31 1 4.5841 -4.8850 0.1584 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240924236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:49 Heat of formation + Delta-G solvation = -8.090278 kcal Electronic energy + Delta-G solvation = -16190.026759 eV Core-core repulsion = 13593.637754 eV Total energy + Delta-G solvation = -2596.389005 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.089 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.25053 -37.82831 -35.98635 -33.73801 -31.70081 -30.58396 -29.25076 -28.05632 -25.26338 -22.62114 -21.93547 -21.02940 -19.91990 -17.72349 -17.44413 -15.95794 -15.61163 -15.01041 -14.89504 -14.28436 -13.91206 -13.76268 -13.22578 -12.78283 -12.52485 -12.09559 -11.87427 -11.60398 -11.35629 -11.06283 -10.93020 -10.75286 -10.41278 -10.17115 -9.83718 -9.61099 -9.24070 -8.47539 -8.10601 -7.69981 -7.37625 -7.04857 -4.55316 1.72121 1.90829 2.56830 2.67992 3.04570 3.15195 3.25248 3.89614 4.22405 4.41687 4.70408 5.30767 5.47434 5.52254 5.77806 5.95342 6.02341 6.04372 6.10096 6.33667 6.38707 6.55106 6.65898 6.79522 6.93615 7.04312 7.09064 7.23668 7.32099 7.39157 7.61537 7.69590 7.81345 8.02478 8.05286 8.26589 8.56620 8.69189 9.95913 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.023356 B = 0.009263 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.549760 B = 3022.032891 C = 3899.266986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.084 3.916 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.436 4.436 8 H 0.097 0.903 9 C 0.109 3.891 10 C -0.232 4.232 11 C -0.073 4.073 12 C -0.247 4.247 13 C -0.058 4.058 14 C -0.174 4.174 15 C 0.030 3.970 16 C -0.099 4.099 17 C -0.111 4.111 18 C -0.168 4.168 19 C 0.091 3.909 20 O -0.505 6.505 21 C -0.152 4.152 22 H 0.287 0.713 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.382 0.618 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 -3.813 2.432 5.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.166 1.166 7 C -0.464 4.464 8 H 0.115 0.885 9 C 0.106 3.894 10 C -0.251 4.251 11 C -0.091 4.091 12 C -0.267 4.267 13 C -0.076 4.076 14 C -0.176 4.176 15 C 0.029 3.971 16 C -0.117 4.117 17 C -0.129 4.129 18 C -0.186 4.186 19 C 0.047 3.953 20 O -0.315 6.315 21 C -0.171 4.171 22 H 0.097 0.903 23 H 0.119 0.881 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.237 0.763 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.652 -3.591 2.790 5.832 hybrid contribution -0.268 0.622 -0.426 0.801 sum 3.384 -2.968 2.364 5.084 Atomic orbital electron populations 1.69667 1.08130 1.30425 1.33996 1.26205 0.94702 1.01706 0.90967 0.86368 0.81460 0.79814 0.79020 1.19566 1.21673 1.16557 1.19487 0.92758 0.96140 1.37988 0.88550 1.17631 0.92684 0.89778 0.89327 1.20787 0.95755 1.04736 1.03846 1.20421 0.93838 0.97018 0.97862 1.20305 0.98333 1.02097 1.05926 1.20711 0.94161 0.96889 0.95868 1.18561 0.93083 1.02651 1.03287 1.18650 0.93985 0.91421 0.93006 1.21450 0.96726 1.00373 0.93172 1.20896 1.00053 0.92517 0.99421 1.21217 1.01579 0.96415 0.99419 1.18308 0.98736 0.82948 0.95283 1.84794 1.51673 1.18789 1.76218 1.21526 1.03307 0.92777 0.99442 0.90288 0.88085 0.88870 0.88733 0.88541 0.85129 0.86377 0.86628 0.76333 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.38 13.93 55.55 0.77 -19.61 16 2 C 0.08 2.11 5.41 -17.31 -0.09 2.01 16 3 Si 0.91 19.98 24.52 -169.99 -4.17 15.81 16 4 H -0.27 -5.80 6.73 56.52 0.38 -5.42 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.24 -5.50 6.85 56.52 0.39 -5.11 16 7 C -0.44 -11.17 7.50 -37.89 -0.28 -11.46 16 8 H 0.10 2.63 7.00 -52.49 -0.37 2.27 16 9 C 0.11 2.67 5.09 -106.56 -0.54 2.13 16 10 C -0.23 -5.45 7.10 -39.28 -0.28 -5.73 16 11 C -0.07 -1.55 9.96 -39.98 -0.40 -1.95 16 12 C -0.25 -5.07 10.03 -39.38 -0.39 -5.47 16 13 C -0.06 -1.22 9.52 -39.29 -0.37 -1.60 16 14 C -0.17 -3.98 5.52 -104.22 -0.58 -4.55 16 15 C 0.03 0.62 4.94 -104.92 -0.52 0.11 16 16 C -0.10 -2.01 8.07 -39.15 -0.32 -2.32 16 17 C -0.11 -1.94 10.03 -39.66 -0.40 -2.34 16 18 C -0.17 -2.80 9.98 -39.32 -0.39 -3.19 16 19 C 0.09 1.59 6.70 -39.27 -0.26 1.33 16 20 O -0.51 -7.63 13.50 -19.42 -0.26 -7.89 16 21 C -0.15 -2.91 9.47 -39.02 -0.37 -3.28 16 22 H 0.29 6.63 8.29 -40.82 -0.34 6.29 16 23 H 0.10 2.35 4.79 -52.49 -0.25 2.10 16 24 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 25 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 26 H 0.10 1.83 8.05 -52.49 -0.42 1.40 16 27 H 0.13 2.76 7.29 -52.49 -0.38 2.37 16 28 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.38 3.92 9.06 45.56 0.41 4.33 16 31 H 0.12 2.20 8.05 -52.48 -0.42 1.78 16 LS Contribution 266.71 15.07 4.02 4.02 Total: -1.00 -27.48 266.71 -7.13 -34.61 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -2.29 Total: 9.38 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -5.20 Total: -36.32 kcal Atomic # 7 Polarization: -20.38 SS G_CDS: 0.77 Total: -19.61 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.26 Total: -7.89 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.17 Total: 15.81 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.48 -7.13 -34.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240924236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.516 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds