Wall clock time and date at job start Thu Apr 9 2020 12:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 120.00296 * 2 1 4 4 H 1.48503 * 109.46950 * 239.99861 * 3 2 1 5 5 H 1.48494 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46935 * 120.00049 * 3 2 1 7 7 C 1.39938 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99960 * 197.75581 * 7 2 1 9 9 C 1.41420 * 119.99557 * 17.74914 * 7 2 1 10 10 C 1.40788 * 120.19446 * 24.65598 * 9 7 2 11 11 C 1.37670 * 119.99360 * 180.25803 * 10 9 7 12 12 C 1.38435 * 120.37995 * 359.75965 * 11 10 9 13 13 C 1.39684 * 120.37742 * 359.97438 * 12 11 10 14 14 C 1.48423 * 120.00099 * 179.97438 * 13 12 11 15 15 C 1.39371 * 120.09481 * 179.74660 * 14 13 12 16 16 C 1.38023 * 119.99135 * 179.76249 * 15 14 13 17 17 C 1.38255 * 120.17720 * 0.48722 * 16 15 14 18 18 C 1.38792 * 120.18503 * 359.76760 * 17 16 15 19 19 O 1.35909 * 119.99282 * 179.97438 * 18 17 16 20 20 C 1.38542 * 120.00709 * 359.97438 * 18 17 16 21 21 C 1.38768 * 120.00104 * 359.97438 * 13 12 11 22 22 H 0.97003 * 119.99563 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99802 * 359.97438 * 10 9 7 24 24 H 1.08004 * 119.81457 * 179.74536 * 11 10 9 25 25 H 1.08004 * 119.81462 * 179.97438 * 12 11 10 26 26 H 1.08007 * 120.00289 * 359.97438 * 15 14 13 27 27 H 1.08003 * 119.91272 * 180.21175 * 16 15 14 28 28 H 1.08000 * 119.90615 * 179.74486 * 17 16 15 29 29 H 0.96696 * 113.99590 * 270.02240 * 19 18 17 30 30 H 1.07997 * 120.08957 * 179.97438 * 20 18 17 31 31 H 1.08000 * 120.18684 * 180.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0493 -1.2343 0.2847 9 6 1.3512 -2.4073 -0.3745 10 6 0.2215 -2.3619 -1.2134 11 6 -0.4178 -3.5277 -1.5705 12 6 0.0463 -4.7491 -1.1132 13 6 1.1691 -4.8128 -0.2847 14 6 1.6593 -6.1268 0.2012 15 6 2.7825 -6.1930 1.0237 16 6 3.2335 -7.4157 1.4783 17 6 2.5800 -8.5776 1.1119 18 6 1.4639 -8.5206 0.2888 19 8 0.8247 -9.6653 -0.0694 20 6 1.0014 -7.2970 -0.1676 21 6 1.8262 -3.6476 0.0842 22 1 -0.4850 0.8401 0.0004 23 1 -0.1462 -1.4122 -1.5730 24 1 -1.2867 -3.4892 -2.2109 25 1 -0.4625 -5.6580 -1.3987 26 1 3.2978 -5.2874 1.3081 27 1 4.1020 -7.4653 2.1185 28 1 2.9392 -9.5323 1.4668 29 1 1.1605 -10.0649 -0.8834 30 1 0.1333 -7.2512 -0.8084 31 1 2.6949 -3.6934 0.7244 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240924268.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:51 Heat of formation + Delta-G solvation = -8.769240 kcal Electronic energy + Delta-G solvation = -15616.447140 eV Core-core repulsion = 13020.028693 eV Total energy + Delta-G solvation = -2596.418447 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.48734 -37.64451 -36.22896 -33.79823 -31.52411 -30.24350 -29.39989 -27.76034 -25.35271 -22.78221 -22.42761 -20.29198 -20.19384 -18.11639 -16.89002 -16.35679 -15.39151 -15.11637 -14.99089 -14.55421 -13.80577 -13.40605 -13.13117 -12.78686 -12.39722 -12.33511 -11.74263 -11.60807 -11.37605 -11.14185 -11.03784 -10.63739 -10.52579 -10.28303 -9.74883 -9.42306 -9.26739 -8.82342 -8.41954 -7.55323 -7.04472 -6.79926 -4.41470 1.36890 1.59845 2.76601 2.98725 3.04571 3.06872 3.19444 3.89869 4.06548 4.40680 4.65382 5.18020 5.20614 5.49407 5.64880 5.66565 5.80464 6.04155 6.16880 6.28719 6.45352 6.65179 6.67461 6.80445 6.87124 6.96248 7.08894 7.20948 7.31190 7.50910 7.78154 7.81802 7.95331 7.99726 8.20182 8.55470 8.82960 8.88403 10.14908 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.043115 B = 0.005351 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.266053 B = 5231.711128 C = 5799.433305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.153 4.153 11 C -0.108 4.108 12 C -0.219 4.219 13 C -0.046 4.046 14 C 0.006 3.994 15 C -0.128 4.128 16 C -0.104 4.104 17 C -0.166 4.166 18 C 0.099 3.901 19 O -0.503 6.503 20 C -0.147 4.147 21 C -0.201 4.201 22 H 0.282 0.718 23 H 0.120 0.880 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.385 0.615 30 H 0.129 0.871 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 -9.021 -0.608 9.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.172 4.172 11 C -0.127 4.127 12 C -0.239 4.239 13 C -0.046 4.046 14 C 0.006 3.994 15 C -0.146 4.146 16 C -0.122 4.122 17 C -0.185 4.185 18 C 0.055 3.945 19 O -0.312 6.312 20 C -0.165 4.165 21 C -0.220 4.220 22 H 0.092 0.908 23 H 0.137 0.863 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.147 0.853 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.239 0.761 30 H 0.147 0.853 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.116 -8.747 -0.076 9.285 hybrid contribution 0.488 0.647 -0.350 0.883 sum 3.604 -8.099 -0.425 8.875 Atomic orbital electron populations 1.69809 1.07600 1.29393 1.35178 1.25897 0.94717 1.01322 0.92182 0.86363 0.80149 0.80194 0.80002 1.18799 1.20327 1.18988 1.19525 0.98103 0.91179 1.40623 0.90398 1.17545 0.91348 0.91867 0.88862 1.21448 0.98862 0.96946 0.99986 1.20637 0.98811 0.93118 1.00099 1.20444 1.00242 0.96399 1.06768 1.18304 0.96708 0.90302 0.99270 1.19049 0.93281 0.92949 0.94111 1.21387 0.96983 0.97954 0.98276 1.20909 0.99585 0.92026 0.99677 1.21267 0.96380 0.98849 1.01999 1.18374 0.92634 0.85457 0.98052 1.84817 1.61171 1.38396 1.46830 1.21534 1.01457 0.91307 1.02220 1.21088 1.03109 0.91925 1.05912 0.90755 0.86267 0.89081 0.89025 0.85275 0.86006 0.86199 0.76055 0.85286 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.30 10.96 55.55 0.61 -19.69 16 2 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 3 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.11 2.79 5.57 -106.87 -0.60 2.19 16 10 C -0.15 -3.93 8.69 -38.83 -0.34 -4.27 16 11 C -0.11 -2.51 10.01 -39.72 -0.40 -2.91 16 12 C -0.22 -4.89 9.44 -38.97 -0.37 -5.25 16 13 C -0.05 -1.03 5.87 -104.97 -0.62 -1.64 16 14 C 0.01 0.12 5.87 -104.91 -0.62 -0.50 16 15 C -0.13 -2.21 9.42 -39.24 -0.37 -2.58 16 16 C -0.10 -1.51 10.03 -39.65 -0.40 -1.90 16 17 C -0.17 -2.37 9.98 -39.37 -0.39 -2.76 16 18 C 0.10 1.53 6.70 -39.26 -0.26 1.26 16 19 O -0.50 -6.70 13.50 -19.46 -0.26 -6.96 16 20 C -0.15 -2.57 9.36 -39.10 -0.37 -2.93 16 21 C -0.20 -4.85 9.17 -38.53 -0.35 -5.20 16 22 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 23 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 24 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 25 H 0.09 1.81 6.18 -52.48 -0.32 1.49 16 26 H 0.13 2.16 6.19 -52.48 -0.33 1.84 16 27 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.38 3.13 9.06 45.56 0.41 3.54 16 30 H 0.13 2.18 6.19 -52.49 -0.32 1.86 16 31 H 0.10 2.20 6.19 -52.49 -0.32 1.87 16 LS Contribution 270.01 15.07 4.07 4.07 Total: -1.00 -28.51 270.01 -8.15 -36.66 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.03 Total: 9.73 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: -5.50 Total: -37.14 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.61 Total: -19.69 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.26 Total: -6.96 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.51 -8.15 -36.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240924268.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.891 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds