Wall clock time and date at job start Thu Apr 9 2020 12:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48506 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47335 * 299.99674 * 3 2 1 6 6 H 1.48504 * 109.47197 * 60.00333 * 3 2 1 7 7 C 1.39991 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99730 * 196.91987 * 7 2 1 9 9 C 1.41004 * 120.00186 * 16.91802 * 7 2 1 10 10 C 1.41340 * 120.54643 * 24.99864 * 9 7 2 11 11 C 1.36527 * 118.43005 * 179.97438 * 10 9 7 12 12 C 1.40025 * 119.45782 * 0.02562 * 11 10 9 13 13 C 1.47729 * 119.45676 * 179.97438 * 12 11 10 14 14 C 1.39647 * 120.19930 * 47.75937 * 13 12 11 15 15 C 1.37824 * 119.92943 * 180.02562 * 14 13 12 16 16 C 1.38578 * 120.33344 * 0.02562 * 15 14 13 17 17 C 1.38076 * 120.39908 * 359.95433 * 16 15 14 18 18 C 1.38828 * 120.06512 * 0.02767 * 17 16 15 19 19 N 1.39157 * 120.16525 * 180.02562 * 18 17 16 20 20 N 1.33098 * 121.08335 * 0.26930 * 12 11 10 21 21 C 1.31250 * 121.70773 * 359.43830 * 20 12 11 22 22 H 0.96997 * 119.99761 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.78860 * 359.95382 * 10 9 7 24 24 H 1.07995 * 120.27593 * 179.97438 * 11 10 9 25 25 H 1.07997 * 120.03414 * 359.97438 * 14 13 12 26 26 H 1.08003 * 119.83994 * 179.97438 * 15 14 13 27 27 H 1.08001 * 119.80632 * 179.97438 * 16 15 14 28 28 H 1.08003 * 119.96755 * 179.75061 * 17 16 15 29 29 H 0.96996 * 120.00284 * 357.67629 * 19 18 17 30 30 H 0.97000 * 119.99964 * 177.68921 * 19 18 17 31 31 H 1.08000 * 119.79749 * 180.26153 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2126 7 6 2.0081 -1.2124 -0.0005 8 1 3.0530 -1.2327 0.2717 9 6 1.3488 -2.4069 -0.3564 10 6 0.2079 -2.3768 -1.1901 11 6 -0.3963 -3.5591 -1.5079 12 6 0.1256 -4.7566 -1.0035 13 6 -0.5285 -6.0359 -1.3469 14 6 -0.8658 -6.3188 -2.6722 15 6 -1.4764 -7.5139 -2.9862 16 6 -1.7588 -8.4378 -1.9928 17 6 -1.4309 -8.1723 -0.6780 18 6 -0.8150 -6.9740 -0.3432 19 7 -0.4832 -6.7045 0.9811 20 7 1.1980 -4.7607 -0.2152 21 6 1.8166 -3.6508 0.1138 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1771 -1.4406 -1.5666 24 1 -1.2702 -3.5708 -2.1423 25 1 -0.6491 -5.6017 -3.4500 26 1 -1.7370 -7.7310 -4.0116 27 1 -2.2378 -9.3714 -2.2483 28 1 -1.6577 -8.8957 0.0912 29 1 -0.7123 -7.3397 1.6775 30 1 -0.0229 -5.8814 1.2079 31 1 2.6867 -3.6903 0.7522 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241050372.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:58 Heat of formation + Delta-G solvation = 40.164549 kcal Electronic energy + Delta-G solvation = -15866.901511 eV Core-core repulsion = 13304.897743 eV Total energy + Delta-G solvation = -2562.003767 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.15861 -37.75161 -34.30587 -33.82499 -31.46730 -30.65620 -29.13803 -27.94769 -25.43508 -22.51758 -22.11406 -21.04510 -20.29899 -17.48216 -16.72210 -16.21183 -15.76843 -15.42682 -14.50969 -14.00121 -13.85249 -13.34253 -13.18974 -12.70095 -12.63604 -12.16385 -11.94505 -11.69068 -11.35961 -11.26197 -10.95193 -10.69417 -10.45813 -10.11464 -9.87382 -9.47398 -8.48215 -8.33847 -8.11786 -7.60468 -7.01622 -6.74189 -4.55467 1.80686 2.19418 2.61390 2.91508 2.96244 3.01197 3.11066 3.76038 4.34674 4.56444 4.57572 5.38722 5.44228 5.50543 5.63854 5.90967 6.01537 6.12549 6.33061 6.52133 6.62717 6.68937 6.76060 6.90875 6.97336 7.04560 7.16027 7.23392 7.41658 7.69403 7.79255 7.87556 8.14732 8.32747 8.45130 8.55223 8.63534 9.52928 9.92550 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.051000 B = 0.005478 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.892255 B = 5109.994231 C = 5360.094407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.067 3.933 10 C -0.139 4.139 11 C -0.124 4.124 12 C 0.010 3.990 13 C -0.066 4.066 14 C -0.073 4.073 15 C -0.187 4.187 16 C -0.089 4.089 17 C -0.212 4.212 18 C 0.233 3.767 19 N -0.866 5.866 20 N -0.457 5.457 21 C -0.023 4.023 22 H 0.285 0.715 23 H 0.125 0.875 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.386 0.614 30 H 0.409 0.591 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 -6.077 -1.316 6.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.472 4.472 8 H 0.103 0.897 9 C 0.062 3.938 10 C -0.164 4.164 11 C -0.145 4.145 12 C -0.125 4.125 13 C -0.072 4.072 14 C -0.093 4.093 15 C -0.207 4.207 16 C -0.108 4.108 17 C -0.235 4.235 18 C 0.126 3.874 19 N -0.405 5.405 20 N -0.165 5.165 21 C -0.186 4.186 22 H 0.096 0.904 23 H 0.143 0.857 24 H 0.117 0.883 25 H 0.134 0.866 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.213 0.787 30 H 0.242 0.758 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.310 -6.675 -1.001 7.134 hybrid contribution 0.030 1.739 0.075 1.740 sum -2.280 -4.937 -0.926 5.516 Atomic orbital electron populations 1.69800 1.07812 1.29811 1.33269 1.26041 0.94809 1.01813 0.91986 0.86167 0.81026 0.80304 0.78792 1.18109 1.19482 1.19746 1.19616 0.98033 0.90910 1.38609 0.89679 1.18573 0.92062 0.93678 0.89442 1.21317 0.98630 0.96928 0.99533 1.21288 0.99408 0.93269 1.00490 1.18746 0.97324 0.90707 1.05750 1.18160 1.03342 0.93680 0.91993 1.20974 0.97206 0.96296 0.94783 1.20652 1.05903 0.95563 0.98595 1.20708 0.99139 0.98441 0.92481 1.20398 1.08997 0.97184 0.96938 1.17846 0.91997 0.92378 0.85221 1.42565 1.66962 1.26381 1.04572 1.67006 1.06659 1.31665 1.11217 1.22462 1.02881 0.88006 1.05229 0.90413 0.85726 0.88333 0.86615 0.87180 0.87169 0.87116 0.78714 0.75808 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.12 10.96 55.55 0.61 -18.51 16 2 C 0.07 1.73 5.17 -17.33 -0.09 1.64 16 3 Si 0.91 17.49 29.59 -169.99 -5.03 12.46 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.44 -11.02 9.06 -37.88 -0.34 -11.36 16 8 H 0.09 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.07 1.71 5.58 -106.64 -0.60 1.12 16 10 C -0.14 -3.49 8.73 -39.02 -0.34 -3.83 16 11 C -0.12 -2.91 9.39 -39.53 -0.37 -3.28 16 12 C 0.01 0.24 5.85 -82.77 -0.48 -0.25 16 13 C -0.07 -1.37 5.62 -104.70 -0.59 -1.96 16 14 C -0.07 -1.33 9.43 -39.21 -0.37 -1.70 16 15 C -0.19 -2.94 10.02 -39.61 -0.40 -3.34 16 16 C -0.09 -1.33 10.03 -39.52 -0.40 -1.73 16 17 C -0.21 -3.40 9.88 -39.42 -0.39 -3.79 16 18 C 0.23 4.37 6.74 -83.52 -0.56 3.80 16 19 N -0.87 -15.06 8.92 32.58 0.29 -14.77 16 20 N -0.46 -10.89 8.38 -9.12 -0.08 -10.97 16 21 C -0.02 -0.55 10.97 -16.77 -0.18 -0.73 16 22 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 23 H 0.12 3.19 6.26 -52.49 -0.33 2.86 16 24 H 0.10 2.10 7.98 -52.49 -0.42 1.68 16 25 H 0.12 2.00 7.98 -52.49 -0.42 1.58 16 26 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 27 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.39 5.35 8.84 -40.82 -0.36 4.99 16 30 H 0.41 7.97 6.40 -40.82 -0.26 7.71 16 31 H 0.13 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 271.53 15.07 4.09 4.09 Total: -1.00 -27.02 271.53 -8.26 -35.28 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -3.03 Total: 17.83 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -5.11 Total: -25.41 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.82 Total: -44.25 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.02 -8.26 -35.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241050372.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.443 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds