Wall clock time and date at job start Thu Apr 9 2020 12:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48506 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47335 * 299.99674 * 3 2 1 6 6 H 1.48504 * 109.47197 * 60.00333 * 3 2 1 7 7 C 1.39991 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99730 * 196.91987 * 7 2 1 9 9 C 1.41004 * 120.00186 * 16.91802 * 7 2 1 10 10 C 1.41340 * 120.54643 * 24.99864 * 9 7 2 11 11 C 1.36527 * 118.43005 * 179.97438 * 10 9 7 12 12 C 1.40025 * 119.45782 * 0.02562 * 11 10 9 13 13 C 1.47729 * 119.45676 * 179.97438 * 12 11 10 14 14 C 1.39647 * 120.19930 * 47.75937 * 13 12 11 15 15 C 1.37824 * 119.92943 * 180.02562 * 14 13 12 16 16 C 1.38578 * 120.33344 * 0.02562 * 15 14 13 17 17 C 1.38076 * 120.39908 * 359.95433 * 16 15 14 18 18 C 1.38828 * 120.06512 * 0.02767 * 17 16 15 19 19 N 1.39157 * 120.16525 * 180.02562 * 18 17 16 20 20 N 1.33098 * 121.08335 * 0.26930 * 12 11 10 21 21 C 1.31250 * 121.70773 * 359.43830 * 20 12 11 22 22 H 0.96997 * 119.99761 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.78860 * 359.95382 * 10 9 7 24 24 H 1.07995 * 120.27593 * 179.97438 * 11 10 9 25 25 H 1.07997 * 120.03414 * 359.97438 * 14 13 12 26 26 H 1.08003 * 119.83994 * 179.97438 * 15 14 13 27 27 H 1.08001 * 119.80632 * 179.97438 * 16 15 14 28 28 H 1.08003 * 119.96755 * 179.75061 * 17 16 15 29 29 H 0.96996 * 120.00284 * 357.67629 * 19 18 17 30 30 H 0.97000 * 119.99964 * 177.68921 * 19 18 17 31 31 H 1.08000 * 119.79749 * 180.26153 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2126 7 6 2.0081 -1.2124 -0.0005 8 1 3.0530 -1.2327 0.2717 9 6 1.3488 -2.4069 -0.3564 10 6 0.2079 -2.3768 -1.1901 11 6 -0.3963 -3.5591 -1.5079 12 6 0.1256 -4.7566 -1.0035 13 6 -0.5285 -6.0359 -1.3469 14 6 -0.8658 -6.3188 -2.6722 15 6 -1.4764 -7.5139 -2.9862 16 6 -1.7588 -8.4378 -1.9928 17 6 -1.4309 -8.1723 -0.6780 18 6 -0.8150 -6.9740 -0.3432 19 7 -0.4832 -6.7045 0.9811 20 7 1.1980 -4.7607 -0.2152 21 6 1.8166 -3.6508 0.1138 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1771 -1.4406 -1.5666 24 1 -1.2702 -3.5708 -2.1423 25 1 -0.6491 -5.6017 -3.4500 26 1 -1.7370 -7.7310 -4.0116 27 1 -2.2378 -9.3714 -2.2483 28 1 -1.6577 -8.8957 0.0912 29 1 -0.7123 -7.3397 1.6775 30 1 -0.0229 -5.8814 1.2079 31 1 2.6867 -3.6903 0.7522 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241050372.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:10:58 Heat of formation + Delta-G solvation = 25.218870 kcal Electronic energy + Delta-G solvation = -15867.549604 eV Core-core repulsion = 13304.897743 eV Total energy + Delta-G solvation = -2562.651861 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.73666 -39.34890 -36.05494 -35.20369 -33.06880 -32.52009 -30.72082 -29.34832 -27.16367 -24.11372 -23.81476 -22.59340 -21.85258 -19.33012 -18.13383 -17.63848 -17.27197 -17.09694 -16.26856 -15.61006 -15.37944 -14.72825 -14.54128 -14.32274 -14.19592 -13.80139 -13.59469 -13.45214 -13.11212 -12.83544 -12.42067 -12.11650 -11.86235 -11.63472 -11.41215 -11.22033 -10.23248 -10.04620 -9.93087 -9.24999 -8.75732 -8.18236 -6.43319 0.34090 0.83986 0.95585 1.09602 1.38486 1.51065 1.54440 2.16039 2.64839 3.12317 3.23998 3.66642 3.90383 4.17937 4.26381 4.40532 4.66763 4.69786 4.77163 4.84694 5.00832 5.03108 5.15073 5.25903 5.33036 5.51629 5.69764 5.79344 5.85483 5.97505 5.99946 6.20498 6.46237 6.70158 6.75084 6.76094 7.13223 7.66838 8.18651 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.051000 B = 0.005478 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.892255 B = 5109.994231 C = 5360.094407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.474 4.474 8 H 0.088 0.912 9 C 0.040 3.960 10 C -0.155 4.155 11 C -0.132 4.132 12 C 0.016 3.984 13 C -0.113 4.113 14 C -0.081 4.081 15 C -0.186 4.186 16 C -0.076 4.076 17 C -0.211 4.211 18 C 0.216 3.784 19 N -0.867 5.867 20 N -0.462 5.462 21 C -0.038 4.038 22 H 0.294 0.706 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.141 0.859 27 H 0.151 0.849 28 H 0.140 0.860 29 H 0.402 0.598 30 H 0.397 0.603 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 -7.457 -1.850 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.502 4.502 8 H 0.106 0.894 9 C 0.036 3.964 10 C -0.181 4.181 11 C -0.152 4.152 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.101 4.101 15 C -0.206 4.206 16 C -0.095 4.095 17 C -0.234 4.234 18 C 0.109 3.891 19 N -0.406 5.406 20 N -0.170 5.170 21 C -0.200 4.200 22 H 0.105 0.895 23 H 0.132 0.868 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.159 0.841 27 H 0.169 0.831 28 H 0.157 0.843 29 H 0.231 0.769 30 H 0.228 0.772 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.997 -8.092 -1.522 8.762 hybrid contribution 0.126 1.951 0.190 1.964 sum -2.872 -6.141 -1.332 6.909 Atomic orbital electron populations 1.69840 1.09286 1.31250 1.33641 1.26904 0.95500 1.04919 0.90841 0.85047 0.79499 0.75508 0.79057 1.17785 1.18825 1.18903 1.19869 0.98423 0.91777 1.40174 0.89370 1.18865 0.92742 0.94591 0.90211 1.21326 0.99306 0.97126 1.00312 1.21513 0.99862 0.93079 1.00786 1.19258 0.96525 0.92038 1.04170 1.18254 1.06211 0.93561 0.93788 1.21124 0.97471 0.97596 0.93893 1.21024 1.04583 0.94414 1.00530 1.21229 0.97214 0.99444 0.91622 1.20787 1.07692 0.96434 0.98447 1.18115 0.92699 0.93133 0.85163 1.42545 1.66823 1.26269 1.04941 1.67096 1.07012 1.31270 1.11652 1.22683 1.03502 0.88070 1.05723 0.89550 0.86813 0.86717 0.86715 0.84108 0.83109 0.84257 0.76907 0.77235 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.78 10.96 21.84 0.24 -40.54 16 2 C 0.04 1.68 5.17 85.27 0.44 2.12 16 3 Si 0.99 35.94 29.59 68.60 2.03 37.97 16 4 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 5 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.47 -24.35 9.06 23.37 0.21 -24.14 16 8 H 0.09 4.30 7.90 -2.91 -0.02 4.28 16 9 C 0.04 2.15 5.58 -21.17 -0.12 2.03 16 10 C -0.16 -8.13 8.73 22.63 0.20 -7.93 16 11 C -0.13 -6.39 9.39 22.30 0.21 -6.18 16 12 C 0.02 0.78 5.85 41.90 0.25 1.02 16 13 C -0.11 -4.59 5.62 -19.92 -0.11 -4.70 16 14 C -0.08 -2.85 9.43 22.51 0.21 -2.64 16 15 C -0.19 -5.20 10.02 22.25 0.22 -4.98 16 16 C -0.08 -1.95 10.03 22.31 0.22 -1.72 16 17 C -0.21 -6.05 9.88 22.37 0.22 -5.83 16 18 C 0.22 7.82 6.74 38.63 0.26 8.08 16 19 N -0.87 -29.62 8.92 -50.85 -0.45 -30.08 16 20 N -0.46 -22.58 8.38 -182.78 -1.53 -24.11 16 21 C -0.04 -1.90 10.97 85.45 0.94 -0.96 16 22 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 23 H 0.11 6.10 6.26 -2.91 -0.02 6.08 16 24 H 0.11 5.00 7.98 -2.91 -0.02 4.97 16 25 H 0.11 3.92 7.98 -2.91 -0.02 3.89 16 26 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 27 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.40 10.62 8.84 -92.71 -0.82 9.80 16 30 H 0.40 15.66 6.40 -92.71 -0.59 15.07 16 31 H 0.14 6.41 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -59.50 271.53 3.19 -56.31 By element: Atomic # 1 Polarization: 46.51 SS G_CDS: -0.24 Total: 46.27 kcal Atomic # 6 Polarization: -48.98 SS G_CDS: 3.15 Total: -45.82 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -1.75 Total: -94.72 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -59.50 3.19 -56.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241050372.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.528 kcal (2) G-P(sol) polarization free energy of solvation -59.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds