Wall clock time and date at job start Thu Apr 9 2020 12:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86802 * 120.00285 * 2 1 4 4 H 1.48503 * 109.47122 * 89.99610 * 3 2 1 5 5 H 1.48499 * 109.47015 * 209.99852 * 3 2 1 6 6 H 1.48499 * 109.46670 * 329.99958 * 3 2 1 7 7 C 1.40029 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00539 * 15.80388 * 7 2 1 9 9 C 1.41435 * 119.99874 * 195.79957 * 7 2 1 10 10 C 1.40446 * 119.77815 * 188.66271 * 9 7 2 11 11 C 1.39388 * 118.83077 * 179.73634 * 10 9 7 12 12 C 1.48242 * 120.82860 * 180.28040 * 11 10 9 13 13 C 1.39322 * 120.16748 * 310.25606 * 12 11 10 14 14 C 1.37973 * 119.94908 * 180.02562 * 13 12 11 15 15 C 1.38442 * 120.29533 * 0.02562 * 14 13 12 16 16 C 1.38101 * 120.32759 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.04675 * 359.67633 * 16 15 14 18 18 N 1.39372 * 120.14400 * 180.32037 * 17 16 15 19 19 C 1.40105 * 118.34154 * 0.53056 * 11 10 9 20 20 C 1.38462 * 119.41932 * 359.72863 * 19 11 10 21 21 N 1.31500 * 121.15360 * 0.02562 * 20 19 11 22 22 H 0.96997 * 119.99748 * 174.80410 * 1 2 3 23 23 H 1.08005 * 120.57973 * 359.97438 * 10 9 7 24 24 H 1.07993 * 120.02104 * 0.02987 * 13 12 11 25 25 H 1.08003 * 119.85287 * 180.02562 * 14 13 12 26 26 H 1.07994 * 119.83556 * 179.97438 * 15 14 13 27 27 H 1.08005 * 119.97740 * 180.02562 * 16 15 14 28 28 H 0.97007 * 119.99780 * 180.29561 * 18 17 16 29 29 H 0.97002 * 120.00592 * 0.29644 * 18 17 16 30 30 H 1.07996 * 120.28761 * 179.70541 * 19 11 10 31 31 H 1.07993 * 119.42037 * 179.97438 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 1.4001 5 1 3.5391 1.4400 -0.7000 6 1 1.4389 2.6526 -0.7001 7 6 2.0075 -1.2127 0.0005 8 1 1.4982 -2.1305 -0.2538 9 6 3.3818 -1.2358 0.3341 10 6 4.1225 -2.4160 0.1583 11 6 5.4768 -2.4150 0.4882 12 6 6.3019 -3.6343 0.3145 13 6 5.8611 -4.8557 0.8195 14 6 6.6329 -5.9876 0.6558 15 6 7.8455 -5.9160 -0.0084 16 6 8.2938 -4.7114 -0.5137 17 6 7.5251 -3.5654 -0.3632 18 7 7.9724 -2.3500 -0.8782 19 6 6.0376 -1.2345 0.9929 20 6 5.2400 -0.1125 1.1427 21 7 3.9655 -0.1359 0.8200 22 1 -0.4849 -0.8366 -0.0761 23 1 3.6519 -3.3075 -0.2292 24 1 4.9161 -4.9164 1.3386 25 1 6.2896 -6.9337 1.0475 26 1 8.4438 -6.8065 -0.1319 27 1 9.2405 -4.6621 -1.0312 28 1 7.4356 -1.5496 -0.7681 29 1 8.8206 -2.3044 -1.3467 30 1 7.0826 -1.2000 1.2631 31 1 5.6722 0.7973 1.5322 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241075591.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:11 Heat of formation + Delta-G solvation = 32.927098 kcal Electronic energy + Delta-G solvation = -15993.339086 eV Core-core repulsion = 13431.021479 eV Total energy + Delta-G solvation = -2562.317607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49356 -38.08372 -34.38038 -33.80101 -32.44790 -30.40672 -29.26997 -28.05851 -25.50480 -23.34423 -21.88411 -21.28472 -20.37926 -18.28308 -16.87680 -16.55168 -15.87247 -15.07869 -14.73246 -14.33036 -13.80459 -13.60457 -13.43985 -13.04906 -12.66520 -12.54089 -12.24131 -12.13851 -11.28414 -10.99281 -10.72358 -10.64083 -10.40563 -10.00103 -9.77470 -9.18518 -9.00488 -8.17883 -8.01957 -7.82175 -7.30608 -7.11585 -4.80279 1.51543 1.89012 2.51210 2.64221 3.53764 3.61366 3.92767 4.17374 4.17999 4.36868 4.56197 5.12808 5.17566 5.34781 5.49536 5.66620 5.71081 5.77763 6.02248 6.20757 6.28903 6.43303 6.49632 6.52887 6.76058 6.90250 6.97676 7.11126 7.25175 7.38355 7.43536 7.66807 7.77238 8.04528 8.05400 8.27154 8.60805 9.48491 9.95012 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.039165 B = 0.006592 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.756322 B = 4246.591590 C = 4716.545792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.048 3.952 3 Si 1.146 2.854 4 H -0.285 1.285 5 H -0.281 1.281 6 H -0.327 1.327 7 C -0.476 4.476 8 H 0.082 0.918 9 C 0.251 3.749 10 C -0.245 4.245 11 C 0.026 3.974 12 C -0.109 4.109 13 C -0.060 4.060 14 C -0.185 4.185 15 C -0.079 4.079 16 C -0.208 4.208 17 C 0.231 3.769 18 N -0.874 5.874 19 C -0.317 4.317 20 C 0.150 3.850 21 N -0.572 5.572 22 H 0.284 0.716 23 H 0.105 0.895 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.407 0.593 29 H 0.391 0.609 30 H 0.104 0.896 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.748 -5.971 -0.814 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.174 4.174 3 Si 0.978 3.022 4 H -0.212 1.212 5 H -0.208 1.208 6 H -0.260 1.260 7 C -0.508 4.508 8 H 0.100 0.900 9 C 0.129 3.871 10 C -0.267 4.267 11 C 0.020 3.980 12 C -0.113 4.113 13 C -0.079 4.079 14 C -0.205 4.205 15 C -0.098 4.098 16 C -0.231 4.231 17 C 0.125 3.875 18 N -0.414 5.414 19 C -0.341 4.341 20 C -0.012 4.012 21 N -0.290 5.290 22 H 0.096 0.904 23 H 0.123 0.877 24 H 0.139 0.861 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.240 0.760 29 H 0.218 0.782 30 H 0.122 0.878 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.868 -3.746 -0.648 12.462 hybrid contribution 0.746 -2.431 -0.246 2.555 sum 12.614 -6.177 -0.893 14.073 Atomic orbital electron populations 1.70620 1.08309 1.33060 1.30174 1.27743 0.95184 1.06115 0.88334 0.82089 0.72487 0.69780 0.77823 1.21153 1.20784 1.26008 1.20752 0.93283 0.96965 1.39759 0.90035 1.18522 0.93327 0.86969 0.88311 1.21739 0.93204 0.99781 1.11995 1.18563 0.92758 0.91312 0.95343 1.18503 0.94527 0.94054 1.04248 1.21037 0.98736 0.91141 0.96949 1.20764 0.96473 0.98162 1.05070 1.20796 0.95801 0.96581 0.96630 1.20439 1.01272 0.92209 1.09146 1.17754 0.91732 0.86487 0.91566 1.42749 1.25705 1.08783 1.64160 1.21175 0.99946 0.94932 1.18021 1.22048 0.89734 0.96254 0.93158 1.66769 1.11799 1.28881 1.21589 0.90443 0.87705 0.86131 0.86723 0.86705 0.86673 0.76046 0.78184 0.87787 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.73 13.65 55.55 0.76 -20.97 16 2 C 0.05 1.31 5.51 -17.34 -0.10 1.21 16 3 Si 1.15 27.79 25.93 -169.99 -4.41 23.38 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.80 6.54 56.52 0.37 -6.43 16 6 H -0.33 -7.77 7.11 56.52 0.40 -7.37 16 7 C -0.48 -12.96 9.51 -37.69 -0.36 -13.32 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.25 6.54 6.27 -85.02 -0.53 6.00 16 10 C -0.24 -5.77 9.36 -38.32 -0.36 -6.13 16 11 C 0.03 0.55 5.08 -104.66 -0.53 0.02 16 12 C -0.11 -1.99 5.53 -104.72 -0.58 -2.57 16 13 C -0.06 -1.00 9.54 -39.28 -0.37 -1.38 16 14 C -0.18 -2.63 10.03 -39.60 -0.40 -3.02 16 15 C -0.08 -1.04 10.03 -39.56 -0.40 -1.44 16 16 C -0.21 -2.86 9.88 -39.42 -0.39 -3.25 16 17 C 0.23 3.69 6.70 -83.55 -0.56 3.13 16 18 N -0.87 -12.18 8.67 32.55 0.28 -11.90 16 19 C -0.32 -6.37 7.85 -38.80 -0.30 -6.68 16 20 C 0.15 3.23 11.17 -17.61 -0.20 3.03 16 21 N -0.57 -14.35 5.02 -11.21 -0.06 -14.41 16 22 H 0.28 7.39 8.73 -40.82 -0.36 7.03 16 23 H 0.10 2.40 8.06 -52.48 -0.42 1.97 16 24 H 0.12 2.00 8.05 -52.49 -0.42 1.58 16 25 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 26 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 27 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.41 6.21 6.01 -40.82 -0.25 5.96 16 29 H 0.39 4.17 8.84 -40.82 -0.36 3.81 16 30 H 0.10 1.86 7.58 -52.49 -0.40 1.46 16 31 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 268.04 15.07 4.04 4.04 Total: -1.00 -28.87 268.04 -7.61 -36.48 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.15 Total: 7.78 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -5.07 Total: -24.40 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.98 Total: -47.28 kcal Atomic # 14 Polarization: 27.79 SS G_CDS: -4.41 Total: 23.38 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.87 -7.61 -36.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241075591.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.405 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds