Wall clock time and date at job start Thu Apr 9 2020 12:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86797 * 119.99905 * 2 1 4 4 H 1.48500 * 109.46760 * 270.00233 * 3 2 1 5 5 H 1.48493 * 109.47045 * 29.99953 * 3 2 1 6 6 H 1.48499 * 109.47132 * 150.00504 * 3 2 1 7 7 C 1.39936 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99701 * 197.89346 * 7 2 1 9 9 C 1.41422 * 120.00584 * 17.89667 * 7 2 1 10 10 C 1.40781 * 120.18690 * 24.47608 * 9 7 2 11 11 C 1.37676 * 119.99493 * 180.02562 * 10 9 7 12 12 C 1.38438 * 120.37652 * 359.74156 * 11 10 9 13 13 C 1.39676 * 120.38090 * 0.51371 * 12 11 10 14 14 C 1.48405 * 120.00546 * 179.76224 * 13 12 11 15 15 C 1.39954 * 120.86840 * 179.72156 * 14 13 12 16 16 C 1.37800 * 119.19774 * 179.72531 * 15 14 13 17 17 N 1.32019 * 120.97387 * 0.02954 * 16 15 14 18 18 C 1.32433 * 121.90220 * 359.97118 * 17 16 15 19 19 N 1.39034 * 119.65112 * 179.97438 * 18 17 16 20 20 C 1.38938 * 120.69765 * 0.02562 * 18 17 16 21 21 C 1.38779 * 119.99603 * 359.49077 * 13 12 11 22 22 H 0.96998 * 119.99897 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.00748 * 0.04192 * 10 9 7 24 24 H 1.07995 * 119.81297 * 179.97438 * 11 10 9 25 25 H 1.08003 * 119.80867 * 180.27626 * 12 11 10 26 26 H 1.08007 * 120.40251 * 359.75527 * 15 14 13 27 27 H 1.07997 * 119.51417 * 180.02562 * 16 15 14 28 28 H 0.97000 * 120.00466 * 0.02562 * 19 18 17 29 29 H 0.97000 * 119.99887 * 180.02562 * 19 18 17 30 30 H 1.08007 * 120.51818 * 180.02562 * 20 18 17 31 31 H 1.08006 * 120.18800 * 180.27274 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4401 0.6999 7 6 2.0080 -1.2119 -0.0005 8 1 3.0488 -1.2347 0.2868 9 6 1.3522 -2.4069 -0.3774 10 6 0.2222 -2.3602 -1.2158 11 6 -0.4135 -3.5259 -1.5798 12 6 0.0551 -4.7485 -1.1303 13 6 1.1717 -4.8129 -0.2936 14 6 1.6638 -6.1277 0.1876 15 6 2.7843 -6.2135 1.0218 16 6 3.2081 -7.4518 1.4529 17 7 2.5737 -8.5513 1.0901 18 6 1.5096 -8.5178 0.3025 19 7 0.8777 -9.7048 -0.0508 20 6 1.0186 -7.3091 -0.1753 21 6 1.8245 -3.6475 0.0831 22 1 -0.4850 0.8400 0.0004 23 1 -0.1460 -1.4099 -1.5736 24 1 -1.2803 -3.4866 -2.2227 25 1 -0.4479 -5.6576 -1.4251 26 1 3.3103 -5.3200 1.3243 27 1 4.0719 -7.5240 2.0971 28 1 1.2164 -10.5516 0.2796 29 1 0.0981 -9.6862 -0.6277 30 1 0.1502 -7.2851 -0.8172 31 1 2.6908 -3.6940 0.7264 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241161902.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:17 Heat of formation + Delta-G solvation = 46.480453 kcal Electronic energy + Delta-G solvation = -15630.497406 eV Core-core repulsion = 13068.767516 eV Total energy + Delta-G solvation = -2561.729889 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.76816 -37.51550 -34.57514 -33.86681 -32.26052 -30.09322 -28.81573 -28.41701 -25.36535 -23.31571 -22.63075 -20.45680 -20.17277 -17.67049 -16.92736 -16.21997 -15.96004 -15.20475 -14.64090 -14.33872 -13.88787 -13.87292 -13.48544 -13.06689 -12.63476 -11.96906 -11.80977 -11.65756 -11.30446 -11.15884 -10.72174 -10.49595 -10.44032 -9.84193 -9.50386 -9.45497 -9.11545 -9.09310 -7.59804 -7.56298 -7.18510 -6.81530 -4.42515 1.47079 1.78637 2.74459 3.04583 3.08467 3.08561 3.23476 3.74591 3.89815 4.35583 4.66183 4.99138 5.27962 5.56920 5.63259 5.70535 5.81299 6.05650 6.24139 6.37328 6.41343 6.72363 6.83380 6.92318 7.02788 7.16579 7.28358 7.47577 7.50831 7.66459 7.76662 7.94011 7.97031 8.18062 8.54005 8.55952 8.81643 8.86413 10.13729 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.043494 B = 0.005359 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.619622 B = 5223.587213 C = 5787.505819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.079 0.921 9 C 0.104 3.896 10 C -0.149 4.149 11 C -0.111 4.111 12 C -0.212 4.212 13 C -0.051 4.051 14 C 0.071 3.929 15 C -0.228 4.228 16 C 0.139 3.861 17 N -0.563 5.563 18 C 0.396 3.604 19 N -0.860 5.860 20 C -0.241 4.241 21 C -0.192 4.192 22 H 0.281 0.719 23 H 0.120 0.880 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.134 0.866 27 H 0.150 0.850 28 H 0.398 0.602 29 H 0.404 0.596 30 H 0.129 0.871 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -8.730 -0.428 8.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.097 0.903 9 C 0.101 3.899 10 C -0.169 4.169 11 C -0.129 4.129 12 C -0.232 4.232 13 C -0.052 4.052 14 C 0.063 3.937 15 C -0.250 4.250 16 C -0.016 4.016 17 N -0.282 5.282 18 C 0.160 3.840 19 N -0.404 5.404 20 C -0.265 4.265 21 C -0.212 4.212 22 H 0.092 0.908 23 H 0.138 0.862 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.152 0.848 27 H 0.167 0.833 28 H 0.227 0.773 29 H 0.233 0.767 30 H 0.146 0.854 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.311 -9.319 -0.095 9.411 hybrid contribution -0.260 1.289 -0.358 1.363 sum 1.051 -8.030 -0.453 8.111 Atomic orbital electron populations 1.69817 1.07604 1.29308 1.35270 1.25901 0.94719 1.01353 0.92170 0.86298 0.80509 0.80514 0.79346 1.19255 1.20318 1.18564 1.19571 0.98224 0.91149 1.40375 0.90281 1.17557 0.91395 0.91901 0.89004 1.21473 0.98720 0.96989 0.99706 1.20643 0.98923 0.93095 1.00239 1.20434 1.00167 0.96357 1.06246 1.18262 0.97058 0.90135 0.99704 1.19246 0.91235 0.92905 0.90313 1.21992 1.00202 0.99115 1.03700 1.22166 0.96857 0.87060 0.95545 1.67025 1.10261 1.33038 1.17891 1.18205 0.89217 0.86345 0.90209 1.42100 1.34880 1.05563 1.57899 1.21378 1.05181 0.91168 1.08818 1.21128 1.02937 0.91839 1.05319 0.90804 0.86213 0.89029 0.89015 0.84843 0.83264 0.77331 0.76653 0.85353 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 10.96 55.55 0.61 -19.53 16 2 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -12.01 9.05 -37.74 -0.34 -12.35 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.10 2.70 5.57 -106.87 -0.60 2.11 16 10 C -0.15 -3.79 8.69 -38.83 -0.34 -4.13 16 11 C -0.11 -2.53 10.01 -39.71 -0.40 -2.93 16 12 C -0.21 -4.65 9.46 -38.97 -0.37 -5.02 16 13 C -0.05 -1.15 5.87 -104.97 -0.62 -1.76 16 14 C 0.07 1.38 5.91 -104.63 -0.62 0.76 16 15 C -0.23 -4.03 9.49 -39.10 -0.37 -4.40 16 16 C 0.14 2.21 11.16 -17.63 -0.20 2.01 16 17 N -0.56 -9.38 10.38 -12.52 -0.13 -9.51 16 18 C 0.40 6.32 7.74 -155.04 -1.20 5.12 16 19 N -0.86 -9.96 9.07 31.10 0.28 -9.68 16 20 C -0.24 -4.18 9.32 -38.88 -0.36 -4.54 16 21 C -0.19 -4.62 9.19 -38.53 -0.35 -4.97 16 22 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 23 H 0.12 3.12 6.15 -52.48 -0.32 2.80 16 24 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 25 H 0.09 1.76 6.27 -52.48 -0.33 1.43 16 26 H 0.13 2.25 6.33 -52.48 -0.33 1.92 16 27 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.40 3.98 8.95 -40.82 -0.37 3.62 16 29 H 0.40 3.69 8.82 -40.82 -0.36 3.32 16 30 H 0.13 2.04 6.32 -52.48 -0.33 1.71 16 31 H 0.10 2.23 6.28 -52.48 -0.33 1.91 16 LS Contribution 269.35 15.07 4.06 4.06 Total: -1.00 -28.43 269.35 -8.82 -37.26 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -2.77 Total: 12.45 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -5.85 Total: -28.31 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.76 Total: -38.71 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.43 -8.82 -37.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241161902.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.737 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds