Wall clock time and date at job start Thu Apr 9 2020 12:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48494 * 109.47025 * 270.00084 * 3 2 1 5 5 H 1.48506 * 109.47049 * 29.99715 * 3 2 1 6 6 H 1.48495 * 109.47282 * 149.99713 * 3 2 1 7 7 C 1.39929 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99902 * 197.36906 * 7 2 1 9 9 C 1.41444 * 120.00224 * 17.36796 * 7 2 1 10 10 C 1.40809 * 120.60462 * 203.39688 * 9 7 2 11 11 N 1.31497 * 120.66894 * 179.97438 * 10 9 7 12 12 C 1.31936 * 122.12301 * 0.02562 * 11 10 9 13 13 C 1.39697 * 121.14729 * 0.02562 * 12 11 10 14 14 C 1.48372 * 120.41142 * 179.97438 * 13 12 11 15 15 C 1.39393 * 120.04280 * 0.02562 * 14 13 12 16 16 C 1.37863 * 119.95264 * 180.02562 * 15 14 13 17 17 C 1.39021 * 120.04248 * 359.97438 * 16 15 14 18 18 N 1.39563 * 119.95210 * 180.02562 * 17 16 15 19 19 C 1.39018 * 120.09227 * 0.27320 * 17 16 15 20 20 C 1.37861 * 120.04362 * 359.44994 * 19 17 16 21 21 C 1.39190 * 119.17472 * 0.23074 * 13 12 11 22 22 H 0.96998 * 119.99739 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.66604 * 359.97438 * 10 9 7 24 24 H 1.08000 * 119.42854 * 179.97438 * 12 11 10 25 25 H 1.08001 * 120.02551 * 0.04323 * 15 14 13 26 26 H 1.07992 * 119.97628 * 179.97438 * 16 15 14 27 27 H 0.97000 * 119.99674 * 359.97438 * 18 17 16 28 28 H 0.96996 * 119.99647 * 179.71906 * 18 17 16 29 29 H 1.07991 * 119.97682 * 179.72759 * 19 17 16 30 30 H 1.07998 * 120.02247 * 180.29230 * 20 19 17 31 31 H 1.08004 * 120.95366 * 179.72014 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0510 -1.2330 0.2798 9 6 1.3491 -2.4090 -0.3646 10 6 1.8321 -3.6562 0.0760 11 7 1.2203 -4.7699 -0.2622 12 6 0.1403 -4.7748 -1.0200 13 6 -0.4085 -3.5846 -1.5035 14 6 -1.6233 -3.6092 -2.3550 15 6 -2.2252 -4.8244 -2.6773 16 6 -3.3536 -4.8451 -3.4691 17 6 -3.8915 -3.6550 -3.9455 18 7 -5.0342 -3.6781 -4.7465 19 6 -3.2897 -2.4423 -3.6294 20 6 -2.1645 -2.4169 -2.8333 21 6 0.2015 -2.3758 -1.1809 22 1 -0.4850 0.8401 0.0004 23 1 2.7140 -3.6984 0.6981 24 1 -0.3271 -5.7153 -1.2717 25 1 -1.8080 -5.7492 -2.3068 26 1 -3.8200 -5.7865 -3.7194 27 1 -5.4522 -4.5242 -4.9707 28 1 -5.4123 -2.8478 -5.0759 29 1 -3.7066 -1.5192 -4.0042 30 1 -1.7001 -1.4743 -2.5841 31 1 -0.1958 -1.4390 -1.5428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241542426.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:33 Heat of formation + Delta-G solvation = 23.125052 kcal Electronic energy + Delta-G solvation = -15799.718585 eV Core-core repulsion = 13236.975930 eV Total energy + Delta-G solvation = -2562.742655 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68108 -39.53491 -36.01590 -35.65542 -32.59360 -32.21515 -31.69808 -28.36850 -27.52844 -24.46803 -23.86815 -22.62442 -21.67733 -19.22103 -18.24808 -17.61756 -17.24906 -16.98480 -16.52660 -16.02207 -14.90400 -14.71787 -14.57853 -14.49770 -14.22319 -13.92095 -13.61775 -13.26732 -13.09866 -12.81124 -12.62411 -12.22931 -11.80857 -11.79126 -11.53520 -11.18346 -10.09257 -9.92478 -9.81639 -9.60286 -8.69995 -8.01608 -6.44771 0.15096 0.59538 0.96726 1.37184 1.39318 1.53004 1.55349 2.19006 2.69637 3.07547 3.10921 3.79610 3.95705 4.04507 4.17738 4.28495 4.54648 4.62038 4.68294 4.83510 4.98853 5.04021 5.18840 5.24094 5.30145 5.42249 5.58869 5.68701 5.93549 5.97094 6.00341 6.14580 6.51841 6.65966 6.76816 6.80298 7.08986 7.71401 8.25466 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.025431 B = 0.006919 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.761665 B = 4045.627264 C = 5069.872546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.483 4.483 8 H 0.085 0.915 9 C 0.039 3.961 10 C -0.049 4.049 11 N -0.480 5.480 12 C -0.043 4.043 13 C -0.073 4.073 14 C -0.112 4.112 15 C -0.069 4.069 16 C -0.198 4.198 17 C 0.214 3.786 18 N -0.864 5.864 19 C -0.203 4.203 20 C -0.075 4.075 21 C -0.153 4.153 22 H 0.292 0.708 23 H 0.133 0.867 24 H 0.150 0.850 25 H 0.132 0.868 26 H 0.149 0.851 27 H 0.408 0.592 28 H 0.406 0.594 29 H 0.137 0.863 30 H 0.106 0.894 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 -1.216 -8.658 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.103 0.897 9 C 0.035 3.965 10 C -0.209 4.209 11 N -0.187 5.187 12 C -0.201 4.201 13 C -0.075 4.075 14 C -0.115 4.115 15 C -0.087 4.087 16 C -0.220 4.220 17 C 0.108 3.892 18 N -0.404 5.404 19 C -0.225 4.225 20 C -0.094 4.094 21 C -0.178 4.178 22 H 0.103 0.897 23 H 0.151 0.849 24 H 0.167 0.833 25 H 0.150 0.850 26 H 0.167 0.833 27 H 0.238 0.762 28 H 0.236 0.764 29 H 0.155 0.845 30 H 0.124 0.876 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.290 -1.868 -8.335 12.620 hybrid contribution -0.054 1.570 -0.108 1.575 sum -9.344 -0.299 -8.442 12.597 Atomic orbital electron populations 1.69856 1.09092 1.30997 1.34284 1.26842 0.95544 1.04693 0.90918 0.85109 0.79097 0.75378 0.79607 1.18608 1.19112 1.17972 1.19841 0.98489 0.91788 1.41097 0.89682 1.18818 0.92920 0.94445 0.90359 1.22664 1.03506 0.88263 1.06467 1.66919 1.08550 1.31852 1.11353 1.22267 0.96758 0.96788 1.04250 1.19777 0.95376 0.94442 0.97886 1.18716 0.96455 0.94478 1.01811 1.21134 0.94772 0.96798 0.96013 1.20735 0.99244 0.97589 1.04478 1.17862 0.87778 0.93223 0.90294 1.42333 1.28848 1.12257 1.56950 1.20628 0.98979 0.97503 1.05434 1.21069 0.95426 0.97274 0.95581 1.21849 0.98777 0.96850 1.00370 0.89731 0.84929 0.83300 0.84984 0.83315 0.76158 0.76419 0.84548 0.87575 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.84 10.92 21.82 0.24 -41.60 16 2 C 0.04 1.79 5.18 85.25 0.44 2.23 16 3 Si 0.99 37.20 29.59 68.60 2.03 39.23 16 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.48 -25.90 9.08 23.47 0.21 -25.68 16 8 H 0.09 4.34 7.90 -2.91 -0.02 4.32 16 9 C 0.04 2.16 5.59 -21.22 -0.12 2.04 16 10 C -0.05 -2.61 10.96 85.37 0.94 -1.67 16 11 N -0.48 -24.96 10.32 -192.75 -1.99 -26.95 16 12 C -0.04 -2.06 10.60 85.03 0.90 -1.16 16 13 C -0.07 -3.57 5.88 -20.00 -0.12 -3.68 16 14 C -0.11 -4.60 5.88 -20.02 -0.12 -4.72 16 15 C -0.07 -2.29 9.43 22.46 0.21 -2.08 16 16 C -0.20 -5.27 9.88 22.37 0.22 -5.05 16 17 C 0.21 5.47 6.75 38.29 0.26 5.73 16 18 N -0.86 -13.87 9.08 -51.30 -0.47 -14.34 16 19 C -0.20 -6.09 9.88 22.37 0.22 -5.87 16 20 C -0.07 -2.87 9.43 22.46 0.21 -2.66 16 21 C -0.15 -8.24 8.16 23.14 0.19 -8.05 16 22 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 23 H 0.13 6.62 8.06 -2.91 -0.02 6.59 16 24 H 0.15 6.12 6.19 -2.91 -0.02 6.10 16 25 H 0.13 4.04 6.21 -2.91 -0.02 4.02 16 26 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 27 H 0.41 4.62 8.84 -92.71 -0.82 3.80 16 28 H 0.41 5.04 8.84 -92.71 -0.82 4.22 16 29 H 0.14 3.38 8.06 -2.92 -0.02 3.36 16 30 H 0.11 4.44 6.25 -2.91 -0.02 4.42 16 31 H 0.12 6.72 4.44 -2.91 -0.01 6.70 16 Total: -1.00 -64.41 269.07 2.82 -61.59 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -0.45 Total: 32.71 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 3.45 Total: -50.64 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.22 Total: -82.89 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -64.41 2.82 -61.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241542426.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.718 kcal (2) G-P(sol) polarization free energy of solvation -64.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds