Wall clock time and date at job start Thu Apr 9 2020 12:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00204 * 2 1 4 4 H 1.48500 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47468 * 300.00445 * 3 2 1 6 6 H 1.48501 * 109.47138 * 60.00098 * 3 2 1 7 7 C 1.37880 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99994 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47367 * 179.97438 * 9 7 2 11 11 C 1.38346 * 119.94030 * 270.00332 * 10 9 7 12 12 C 1.38304 * 120.24881 * 180.02562 * 11 10 9 13 13 C 1.38037 * 120.11752 * 359.97438 * 12 11 10 14 14 C 1.39318 * 119.88051 * 0.02562 * 13 12 11 15 15 C 1.48375 * 120.12238 * 180.02562 * 14 13 12 16 16 C 1.40028 * 121.13362 * 359.68885 * 15 14 13 17 17 C 1.38339 * 117.83813 * 179.78792 * 16 15 14 18 18 N 1.32015 * 119.96428 * 0.50043 * 17 16 15 19 19 N 1.28282 * 122.48914 * 359.73782 * 18 17 16 20 20 C 1.31823 * 122.30631 * 0.02562 * 19 18 17 21 21 C 1.37988 * 119.93971 * 89.99731 * 10 9 7 22 22 H 0.96998 * 119.99671 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46531 * 59.99777 * 9 7 2 24 24 H 1.09004 * 109.46993 * 300.00511 * 9 7 2 25 25 H 1.08005 * 119.87381 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.93724 * 179.97438 * 12 11 10 27 27 H 1.08001 * 120.05868 * 180.02562 * 13 12 11 28 28 H 1.08000 * 121.07819 * 0.02759 * 16 15 14 29 29 H 1.08008 * 120.01839 * 180.21817 * 17 16 15 30 30 H 1.08002 * 120.16192 * 180.02562 * 20 19 18 31 31 H 1.08001 * 120.06335 * 0.28112 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0018 11 6 2.6780 -4.1689 -1.2012 12 6 3.5763 -5.2205 -1.2098 13 6 4.0314 -5.7524 -0.0202 14 6 3.5838 -5.2285 1.1907 15 6 4.0699 -5.7958 2.4726 16 6 4.9752 -6.8638 2.4946 17 6 5.3868 -7.3365 3.7279 18 7 4.9190 -6.7880 4.8339 19 7 4.0858 -5.8126 4.8202 20 6 3.6352 -5.2866 3.6987 21 6 2.6787 -4.1686 1.1934 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8897 25 1 2.3241 -3.7560 -2.1344 26 1 3.9222 -5.6262 -2.1490 27 1 4.7332 -6.5733 -0.0280 28 1 5.3431 -7.3018 1.5785 29 1 6.0871 -8.1567 3.7860 30 1 2.9344 -4.4654 3.7276 31 1 2.3251 -3.7616 2.1291 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242055951.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:46 Heat of formation + Delta-G solvation = 50.603032 kcal Electronic energy + Delta-G solvation = -15519.966424 eV Core-core repulsion = 12958.415303 eV Total energy + Delta-G solvation = -2561.551121 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.00773 -40.07423 -35.86198 -34.78345 -33.66535 -32.87990 -30.92374 -29.00371 -25.95258 -25.75083 -24.90686 -22.80042 -21.55718 -18.61350 -18.41374 -18.23787 -17.22677 -16.77883 -16.46013 -15.91785 -15.79899 -15.16799 -14.68447 -14.58786 -14.14993 -13.99308 -13.56902 -13.32072 -12.88193 -12.66959 -12.35540 -12.10522 -11.85840 -11.73595 -11.37201 -11.29596 -11.12201 -10.72571 -10.63226 -9.60450 -9.28540 -8.23192 -6.36136 -0.65174 -0.04529 0.58819 0.82973 1.37632 1.39135 1.51484 2.37177 2.56423 3.05536 3.08417 3.17239 3.30669 3.53035 3.70419 3.84669 4.07957 4.28521 4.32602 4.51686 4.54333 4.59527 4.73232 4.94215 5.06509 5.17277 5.27694 5.31869 5.34359 5.55026 5.59999 5.72796 6.01147 6.06300 6.19157 6.77023 7.32995 7.70659 8.86509 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.027116 B = 0.005642 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.355582 B = 4961.784340 C = 5573.229984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.054 3.946 10 C -0.066 4.066 11 C -0.121 4.121 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.068 4.068 15 C -0.036 4.036 16 C -0.105 4.105 17 C 0.049 3.951 18 N -0.290 5.290 19 N -0.273 5.273 20 C 0.033 3.967 21 C -0.116 4.116 22 H 0.266 0.734 23 H 0.007 0.993 24 H 0.003 0.997 25 H 0.118 0.882 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.193 0.807 29 H 0.216 0.784 30 H 0.170 0.830 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.167 -14.948 -0.467 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.017 3.983 10 C -0.066 4.066 11 C -0.139 4.139 12 C -0.129 4.129 13 C -0.126 4.126 14 C -0.069 4.069 15 C -0.047 4.047 16 C -0.133 4.133 17 C -0.114 4.114 18 N -0.131 5.131 19 N -0.113 5.113 20 C -0.132 4.132 21 C -0.134 4.134 22 H 0.075 0.925 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.136 0.864 26 H 0.177 0.823 27 H 0.183 0.817 28 H 0.210 0.790 29 H 0.233 0.767 30 H 0.187 0.813 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.014 -14.833 1.253 18.518 hybrid contribution -0.408 1.487 -1.418 2.095 sum 10.606 -13.346 -0.165 17.048 Atomic orbital electron populations 1.70078 1.07633 1.27907 1.51288 1.25888 0.95714 1.03014 0.94585 0.85430 0.78939 0.78945 0.77967 1.18983 1.20026 1.20365 1.21394 0.93050 0.91209 1.50926 0.92745 1.18126 0.92949 0.91159 0.96034 1.20319 0.97256 0.95307 0.93747 1.21374 0.98196 0.97026 0.97333 1.21388 0.96434 0.95562 0.99533 1.21448 1.00246 1.00657 0.90299 1.18552 0.99028 0.97147 0.92165 1.20078 0.95745 0.95512 0.93351 1.22915 0.94525 0.94094 1.01780 1.24901 0.98121 0.99817 0.88590 1.72795 1.06366 1.04688 1.29206 1.72895 1.06530 1.05247 1.26635 1.24631 0.99052 1.00086 0.89443 1.21129 0.98038 0.96409 0.97829 0.92547 0.97506 0.97917 0.86354 0.82329 0.81720 0.78962 0.76736 0.81276 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.53 -29.58 9.09 25.60 0.23 -29.35 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.05 2.83 5.10 29.10 0.15 2.97 16 10 C -0.07 -2.76 5.06 -19.90 -0.10 -2.86 16 11 C -0.12 -4.20 9.69 22.31 0.22 -3.99 16 12 C -0.11 -2.81 10.03 22.24 0.22 -2.59 16 13 C -0.11 -2.47 9.46 22.48 0.21 -2.26 16 14 C -0.07 -1.95 5.88 -20.04 -0.12 -2.07 16 15 C -0.04 -0.92 5.92 -19.79 -0.12 -1.03 16 16 C -0.10 -1.83 9.58 22.73 0.22 -1.61 16 17 C 0.05 0.90 11.30 84.69 0.96 1.85 16 18 N -0.29 -8.01 11.49 -57.38 -0.66 -8.67 16 19 N -0.27 -8.66 11.49 -56.61 -0.65 -9.31 16 20 C 0.03 0.98 10.73 85.05 0.91 1.90 16 21 C -0.12 -4.25 9.11 22.48 0.20 -4.05 16 22 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 23 H 0.01 0.37 8.08 -2.38 -0.02 0.35 16 24 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 25 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 26 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.17 2.14 6.34 -2.91 -0.02 2.12 16 28 H 0.19 1.62 6.42 -2.91 -0.02 1.60 16 29 H 0.22 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.17 4.96 6.34 -2.91 -0.02 4.94 16 31 H 0.11 4.23 6.31 -2.91 -0.02 4.21 16 Total: -1.00 -70.21 275.34 5.60 -64.62 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.14 Total: 4.82 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 3.45 Total: -42.26 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.02 Total: -73.10 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.21 5.60 -64.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242055951.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.219 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds