Wall clock time and date at job start Thu Apr 9 2020 12:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48501 * 109.46858 * 239.99637 * 3 2 1 5 5 H 1.48498 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47262 * 120.00259 * 3 2 1 7 7 C 1.40070 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00269 * 164.48489 * 7 2 1 9 9 C 1.40889 * 119.99818 * 344.49139 * 7 2 1 10 10 C 1.40742 * 120.33120 * 332.98568 * 9 7 2 11 11 C 1.36440 * 119.98805 * 180.02562 * 10 9 7 12 12 C 1.38924 * 120.68172 * 359.95581 * 11 10 9 13 13 C 1.38087 * 120.67111 * 0.02562 * 12 11 10 14 14 C 1.39151 * 119.99102 * 0.02562 * 13 12 11 15 15 C 1.47886 * 120.34118 * 179.72743 * 14 13 12 16 16 C 1.39690 * 120.53182 * 129.99255 * 15 14 13 17 17 N 1.31658 * 120.71817 * 180.02562 * 16 15 14 18 18 C 1.31889 * 121.95740 * 359.97438 * 17 16 15 19 19 C 1.39034 * 120.98801 * 0.02562 * 18 17 16 20 20 N 1.39727 * 120.42060 * 179.97438 * 19 18 17 21 21 C 1.39014 * 119.16710 * 359.74272 * 19 18 17 22 22 H 0.97001 * 119.99747 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.00595 * 0.02562 * 10 9 7 24 24 H 1.07995 * 119.65414 * 179.97438 * 11 10 9 25 25 H 1.08001 * 119.65894 * 180.02562 * 12 11 10 26 26 H 1.08007 * 120.00514 * 179.97438 * 13 12 11 27 27 H 1.07996 * 119.64062 * 0.02562 * 16 15 14 28 28 H 1.08003 * 119.50128 * 180.02562 * 18 17 16 29 29 H 0.97002 * 119.99558 * 359.97438 * 20 19 18 30 30 H 0.96998 * 120.00258 * 180.02562 * 20 19 18 31 31 H 1.08000 * 120.89358 * 180.27157 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0955 1.6964 -1.2125 5 1 1.2767 2.7465 0.0006 6 1 3.0955 1.6965 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0586 -1.2302 -0.2496 9 6 1.3421 -2.4108 0.3273 10 6 0.2138 -2.3900 1.1683 11 6 -0.4255 -3.5542 1.4806 12 6 0.0247 -4.7676 0.9758 13 6 1.1287 -4.8201 0.1480 14 6 1.8025 -3.6498 -0.1878 15 6 2.9893 -3.6977 -1.0688 16 6 3.0860 -2.8512 -2.1758 17 7 4.1407 -2.8911 -2.9629 18 6 5.1426 -3.7208 -2.7459 19 6 5.1258 -4.5967 -1.6663 20 7 6.1935 -5.4711 -1.4479 21 6 4.0354 -4.5883 -0.8040 22 1 -0.4850 0.8401 0.0004 23 1 -0.1460 -1.4527 1.5663 24 1 -1.2906 -3.5320 2.1267 25 1 -0.4941 -5.6792 1.2334 26 1 1.4697 -5.7694 -0.2381 27 1 2.2869 -2.1565 -2.3884 28 1 5.9889 -3.7197 -3.4170 29 1 6.9527 -5.4698 -2.0517 30 1 6.1753 -6.0799 -0.6930 31 1 3.9953 -5.2536 0.0457 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242499634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:58 Heat of formation + Delta-G solvation = 43.492818 kcal Electronic energy + Delta-G solvation = -16150.544574 eV Core-core repulsion = 13588.685131 eV Total energy + Delta-G solvation = -2561.859443 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45845 -37.44882 -34.58646 -33.76256 -32.24771 -29.78878 -28.78511 -27.86944 -25.38628 -23.11721 -22.16889 -20.81814 -19.81722 -17.38747 -16.78055 -16.34644 -15.93517 -15.28462 -14.55560 -14.33818 -13.78598 -13.61428 -12.97790 -12.66843 -12.38778 -12.23424 -11.71025 -11.37649 -11.26143 -11.12736 -10.79819 -10.72791 -10.50243 -9.76853 -9.60906 -9.25727 -8.85070 -8.63328 -7.49696 -7.40346 -7.08574 -6.82151 -4.42642 1.82368 2.16868 2.77781 3.01806 3.05173 3.09733 3.21868 3.89895 4.11521 4.56233 4.67939 5.29290 5.51365 5.57062 5.68829 5.91686 6.14185 6.24583 6.33447 6.39988 6.61484 6.69596 6.95000 7.09074 7.15140 7.30162 7.34154 7.50196 7.77274 7.83318 7.93485 7.98915 8.02980 8.18960 8.53276 8.77808 8.83336 8.88652 10.08329 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.009976 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.936750 B = 2805.958060 C = 4010.900638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.133 3.867 10 C -0.157 4.157 11 C -0.099 4.099 12 C -0.244 4.244 13 C -0.068 4.068 14 C -0.190 4.190 15 C 0.022 3.978 16 C 0.062 3.938 17 N -0.454 5.454 18 C -0.010 4.010 19 C 0.157 3.843 20 N -0.880 5.880 21 C -0.171 4.171 22 H 0.284 0.716 23 H 0.119 0.881 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.159 0.841 28 H 0.136 0.864 29 H 0.394 0.606 30 H 0.394 0.606 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -4.918 -0.588 8.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.478 4.478 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.176 4.176 11 C -0.118 4.118 12 C -0.264 4.264 13 C -0.086 4.086 14 C -0.193 4.193 15 C 0.019 3.981 16 C -0.099 4.099 17 N -0.161 5.161 18 C -0.170 4.170 19 C 0.052 3.948 20 N -0.421 5.421 21 C -0.201 4.201 22 H 0.095 0.905 23 H 0.137 0.863 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.176 0.824 28 H 0.154 0.846 29 H 0.221 0.779 30 H 0.222 0.778 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.099 -4.139 -1.348 7.493 hybrid contribution 0.554 -0.113 0.859 1.028 sum 6.653 -4.253 -0.489 7.911 Atomic orbital electron populations 1.69776 1.07613 1.29676 1.34003 1.25940 0.94718 1.01390 0.92082 0.86381 0.80269 0.80043 0.80349 1.18525 1.20222 1.18792 1.19567 0.97558 0.90718 1.39916 0.89980 1.17509 0.90500 0.90924 0.88014 1.21051 0.98933 0.96970 1.00687 1.20492 0.98479 0.93400 0.99431 1.20272 1.01781 0.96401 1.07924 1.20542 0.95546 0.95460 0.97038 1.18475 1.00064 0.94213 1.06519 1.19600 0.92874 0.92213 0.93391 1.22865 0.95991 0.99404 0.91629 1.67389 1.00715 1.19094 1.28950 1.21960 0.99494 0.97360 0.98205 1.18710 0.88910 0.91805 0.95330 1.42248 1.21418 1.43824 1.34645 1.21154 0.93879 1.04046 1.01044 0.90541 0.86345 0.89414 0.89393 0.89297 0.82398 0.84611 0.77867 0.77839 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.52 10.99 55.55 0.61 -18.91 16 2 C 0.08 1.89 5.17 -17.32 -0.09 1.80 16 3 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 7 C -0.45 -11.41 7.13 -37.89 -0.27 -11.68 16 8 H 0.08 2.10 6.65 -52.49 -0.35 1.75 16 9 C 0.13 3.41 5.55 -106.56 -0.59 2.82 16 10 C -0.16 -3.94 8.62 -39.28 -0.34 -4.28 16 11 C -0.10 -2.27 9.96 -39.98 -0.40 -2.67 16 12 C -0.24 -5.35 10.03 -39.38 -0.40 -5.75 16 13 C -0.07 -1.50 9.54 -39.30 -0.37 -1.87 16 14 C -0.19 -4.51 5.54 -104.22 -0.58 -5.09 16 15 C 0.02 0.48 4.93 -104.78 -0.52 -0.04 16 16 C 0.06 1.37 9.19 -17.08 -0.16 1.21 16 17 N -0.45 -9.41 10.34 -12.71 -0.13 -9.54 16 18 C -0.01 -0.17 11.05 -17.23 -0.19 -0.36 16 19 C 0.16 2.60 6.78 -83.68 -0.57 2.04 16 20 N -0.88 -10.36 9.10 32.47 0.30 -10.06 16 21 C -0.17 -3.23 9.56 -38.67 -0.37 -3.60 16 22 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 23 H 0.12 3.04 6.26 -52.49 -0.33 2.71 16 24 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 25 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 27 H 0.16 3.69 7.32 -52.49 -0.38 3.31 16 28 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 29 H 0.39 3.65 8.85 -40.82 -0.36 3.29 16 30 H 0.39 3.97 8.85 -40.82 -0.36 3.60 16 31 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 270.89 15.07 4.08 4.08 Total: -1.00 -27.43 270.89 -8.04 -35.47 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -3.03 Total: 12.91 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -4.84 Total: -27.47 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.77 Total: -38.52 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.43 -8.04 -35.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242499634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.964 kcal (2) G-P(sol) polarization free energy of solvation -27.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds