Wall clock time and date at job start Thu Apr 9 2020 12:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47172 * 2 1 4 4 C 1.45757 * 117.94083 * 90.00399 * 3 2 1 5 5 C 1.52927 * 110.48164 * 199.07361 * 4 3 2 6 6 C 1.53342 * 108.67632 * 309.24721 * 5 4 3 7 7 C 1.53066 * 108.42643 * 67.52996 * 6 5 4 8 8 H 1.08995 * 109.40103 * 71.14437 * 7 6 5 9 9 N 1.46501 * 109.39988 * 190.97284 * 7 6 5 10 10 C 1.34778 * 119.99857 * 205.00098 * 9 7 6 11 11 O 1.21692 * 120.00154 * 0.02562 * 10 9 7 12 12 C 1.46378 * 119.99927 * 180.02562 * 10 9 7 13 13 H 1.07996 * 120.00169 * 359.97438 * 12 10 9 14 14 C 1.40044 * 119.99914 * 180.02562 * 12 10 9 15 15 N 1.30675 * 120.00039 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00022 * 179.97438 * 14 12 10 17 17 H 1.48508 * 109.46967 * 90.00039 * 16 14 12 18 18 H 1.48507 * 109.47368 * 209.99910 * 16 14 12 19 19 H 1.48503 * 109.47422 * 330.00186 * 16 14 12 20 20 C 1.33349 * 117.94734 * 269.99700 * 3 2 1 21 21 O 1.21278 * 118.25070 * 357.76064 * 20 3 2 22 22 H 1.08997 * 109.47236 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47074 * 300.00149 * 1 2 3 24 24 H 1.09004 * 109.47050 * 59.99826 * 1 2 3 25 25 H 1.09005 * 109.46920 * 240.00589 * 2 1 3 26 26 H 1.08995 * 109.47110 * 120.00490 * 2 1 3 27 27 H 1.08995 * 109.30501 * 78.76208 * 4 3 2 28 28 H 1.09002 * 109.29865 * 319.38116 * 4 3 2 29 29 H 1.09001 * 109.60412 * 69.00213 * 5 4 3 30 30 H 1.09000 * 109.59878 * 189.48826 * 5 4 3 31 31 H 1.08994 * 109.67342 * 187.26843 * 6 5 4 32 32 H 1.09004 * 109.66885 * 307.75965 * 6 5 4 33 33 H 0.96997 * 119.99857 * 25.00351 * 9 7 6 34 34 H 0.97005 * 119.99548 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2461 2.0251 1.2877 5 6 2.2870 3.5453 1.1260 6 6 3.2667 3.8930 -0.0012 7 6 2.6789 3.3951 -1.3239 8 1 1.8274 4.0175 -1.5988 9 7 3.6997 3.4768 -2.3715 10 6 3.3321 3.5873 -3.6634 11 8 2.1523 3.6197 -3.9597 12 6 4.3521 3.6683 -4.7102 13 1 5.3992 3.6400 -4.4473 14 6 3.9702 3.7837 -6.0526 15 7 2.7032 3.8185 -6.3708 16 14 5.2718 3.8878 -7.3884 17 1 5.6078 2.5202 -7.8597 18 1 4.7515 4.6893 -8.5252 19 1 6.4908 4.5366 -6.8422 20 6 2.2268 1.9704 -1.1780 21 8 2.0415 1.3211 -2.1854 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.1946 1.6810 1.6999 28 1 1.4410 1.7571 1.9719 29 1 1.2927 3.9130 0.8727 30 1 2.6227 4.0030 2.0565 31 1 3.4069 4.9730 -0.0454 32 1 4.2245 3.4059 0.1818 33 1 4.6402 3.4513 -2.1352 34 1 2.4387 3.8980 -7.3007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722342336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:04 Heat of formation + Delta-G solvation = -106.378223 kcal Electronic energy + Delta-G solvation = -17799.750956 eV Core-core repulsion = 14924.083698 eV Total energy + Delta-G solvation = -2875.667259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63487 -39.12488 -37.46452 -36.17294 -34.60887 -33.58248 -30.97805 -29.98225 -28.04490 -25.46971 -24.33362 -22.69315 -21.80593 -19.92693 -18.98205 -17.70168 -17.59240 -17.42077 -16.93270 -15.95342 -15.52629 -15.38241 -14.80482 -14.68303 -14.44697 -14.35960 -13.99055 -13.40992 -13.23247 -12.94941 -12.82263 -12.71445 -12.65169 -12.34582 -12.17168 -12.01641 -11.93950 -11.72533 -10.98383 -10.80741 -9.83813 -9.63573 -9.45330 -8.27796 -6.85336 1.37242 1.40781 1.55527 1.68164 2.04484 2.25296 2.53453 3.10800 3.57220 3.77333 3.84836 3.89067 4.08269 4.18708 4.26719 4.41560 4.48499 4.61642 4.66256 4.84944 4.86197 5.01745 5.06863 5.10717 5.23406 5.30877 5.32729 5.64617 5.86529 6.12229 6.23884 6.56573 6.86674 7.33015 7.53845 8.53158 8.70799 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.006462 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.083958 B = 4331.950549 C = 4730.574971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.106 3.894 5 C -0.126 4.126 6 C -0.116 4.116 7 C 0.142 3.858 8 H 0.067 0.933 9 N -0.739 5.739 10 C 0.544 3.456 11 O -0.620 6.620 12 C -0.576 4.576 13 H 0.088 0.912 14 C 0.024 3.976 15 N -0.825 5.825 16 Si 1.002 2.998 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.243 1.243 20 C 0.487 3.513 21 O -0.586 6.586 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.015 0.985 25 H 0.046 0.954 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.397 0.603 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -2.450 19.416 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.339 5.339 4 C -0.015 4.015 5 C -0.164 4.164 6 C -0.154 4.154 7 C 0.033 3.967 8 H 0.085 0.915 9 N -0.394 5.394 10 C 0.348 3.652 11 O -0.506 6.506 12 C -0.612 4.612 13 H 0.106 0.894 14 C -0.190 4.190 15 N -0.455 5.455 16 Si 0.821 3.179 17 H -0.191 1.191 18 H -0.195 1.195 19 H -0.166 1.166 20 C 0.274 3.726 21 O -0.465 6.465 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.135 0.865 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.231 0.769 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.667 -2.714 18.574 18.845 hybrid contribution 0.357 -0.114 -1.093 1.156 sum 2.023 -2.828 17.481 17.823 Atomic orbital electron populations 1.22036 0.95497 1.02907 1.01148 1.21553 0.94936 0.82775 1.03147 1.47666 1.65280 1.14738 1.06174 1.21787 1.03720 0.93107 0.82871 1.21902 0.99614 0.94868 0.99976 1.21939 1.00142 1.02928 0.90353 1.20587 0.93929 0.91073 0.91138 0.91518 1.45702 1.07935 1.80288 1.05466 1.18590 0.89036 0.75524 0.82083 1.90550 1.21262 1.56395 1.82356 1.21427 0.93789 1.54553 0.91459 0.89407 1.27064 0.98290 0.91289 1.02405 1.70233 1.19336 1.36620 1.19299 0.84973 0.77863 0.79110 0.75973 1.19070 1.19522 1.16622 1.21427 0.77056 0.90941 0.83172 1.90729 1.52386 1.65034 1.38349 0.89879 0.90324 0.96610 0.93545 0.86469 0.89374 0.87893 0.91769 0.85135 0.89180 0.89320 0.76867 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.23 71.98 0.74 -3.17 16 2 C 0.10 2.61 5.94 86.38 0.51 3.13 16 3 N -0.60 -17.73 2.81 -826.62 -2.32 -20.06 16 4 C 0.11 1.76 6.32 86.49 0.55 2.30 16 5 C -0.13 -2.06 6.02 30.68 0.18 -1.87 16 6 C -0.12 -2.80 5.50 30.73 0.17 -2.63 16 7 C 0.14 5.83 2.70 44.10 0.12 5.95 16 8 H 0.07 3.20 7.58 -2.39 -0.02 3.18 16 9 N -0.74 -35.83 4.96 -451.07 -2.24 -38.07 16 10 C 0.54 34.22 7.17 86.36 0.62 34.84 16 11 O -0.62 -45.23 14.22 -2.63 -0.04 -45.27 16 12 C -0.58 -35.02 9.54 24.83 0.24 -34.79 16 13 H 0.09 4.75 7.85 -2.91 -0.02 4.72 16 14 C 0.02 1.42 5.50 85.30 0.47 1.89 16 15 N -0.83 -54.28 11.83 21.83 0.26 -54.02 16 16 Si 1.00 43.56 29.56 68.60 2.03 45.59 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.24 -9.61 7.11 99.48 0.71 -8.90 16 20 C 0.49 20.89 7.19 87.72 0.63 21.53 16 21 O -0.59 -33.35 14.92 -1.33 -0.02 -33.37 16 22 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.05 1.60 7.13 -2.38 -0.02 1.59 16 26 H 0.12 1.99 8.01 -2.39 -0.02 1.97 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 30 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 1.86 8.10 -2.38 -0.02 1.84 16 33 H 0.40 16.32 8.56 -92.71 -0.79 15.53 16 34 H 0.27 16.23 8.29 -92.70 -0.77 15.46 16 Total: -1.00 -95.79 286.34 2.20 -93.59 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.31 Total: 24.43 kcal Atomic # 6 Polarization: 22.95 SS G_CDS: 4.22 Total: 27.17 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.30 Total: -112.15 kcal Atomic # 8 Polarization: -78.58 SS G_CDS: -0.06 Total: -78.64 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -95.79 2.20 -93.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722342336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.787 kcal (2) G-P(sol) polarization free energy of solvation -95.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds