Wall clock time and date at job start Thu Apr 9 2020 12:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.47130 * 2 1 4 4 C 1.46900 * 110.99906 * 199.90115 * 3 2 1 5 5 C 1.50701 * 109.47196 * 72.10370 * 4 3 2 6 6 H 1.08001 * 120.00201 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99659 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00616 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99676 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47123 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47104 * 120.00428 * 9 7 5 12 12 H 1.48501 * 109.47067 * 240.00227 * 9 7 5 13 13 C 1.46893 * 110.99915 * 75.94478 * 3 2 1 14 14 H 1.09000 * 109.52698 * 315.48076 * 13 3 2 15 15 C 1.53247 * 109.52191 * 195.35310 * 13 3 2 16 16 C 1.53240 * 108.56909 * 184.48155 * 15 13 3 17 17 C 1.50583 * 109.21286 * 55.58212 * 16 15 13 18 18 O 1.21227 * 119.35666 * 150.93863 * 17 16 15 19 19 N 1.34209 * 121.23450 * 331.01595 * 17 16 15 20 20 C 1.34144 * 122.60400 * 0.41516 * 19 17 16 21 21 O 1.21229 * 119.36029 * 179.54621 * 20 19 17 22 22 H 1.09003 * 109.46779 * 294.84930 * 1 2 3 23 23 H 1.09002 * 109.46837 * 54.84885 * 1 2 3 24 24 H 1.08999 * 109.47177 * 174.84713 * 1 2 3 25 25 H 1.08996 * 109.47319 * 239.99808 * 2 1 3 26 26 H 1.09002 * 109.46853 * 119.99844 * 2 1 3 27 27 H 1.08998 * 109.47129 * 192.10773 * 4 3 2 28 28 H 1.08995 * 109.46930 * 312.10271 * 4 3 2 29 29 H 0.97002 * 120.00318 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.61706 * 64.75718 * 15 13 3 31 31 H 1.08999 * 109.62245 * 304.20881 * 15 13 3 32 32 H 1.09002 * 109.52491 * 175.52429 * 16 15 13 33 33 H 1.09006 * 109.52107 * 295.64633 * 16 15 13 34 34 H 0.97000 * 118.69137 * 180.48149 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4110 1.4515 -0.4668 5 6 3.4556 1.1943 -1.9511 6 1 2.5419 1.0012 -2.4934 7 6 4.6630 1.2065 -2.6167 8 7 5.7757 1.4421 -1.9564 9 14 4.7183 0.8884 -4.4567 10 1 3.3412 0.6528 -4.9599 11 1 5.3016 2.0676 -5.1456 12 1 5.5561 -0.3074 -4.7273 13 6 1.8812 1.9923 1.3303 14 1 0.9000 1.7524 1.7400 15 6 2.0309 3.5133 1.2170 16 6 1.9954 4.1134 2.6266 17 6 3.0603 3.4627 3.4692 18 8 3.5655 4.0886 4.3761 19 7 3.4614 2.2038 3.2337 20 6 2.9533 1.4568 2.2421 21 8 3.3649 0.3285 2.0771 22 1 -0.3633 0.4319 0.9326 23 1 -0.3633 0.5917 -0.8403 24 1 -0.3633 -1.0235 -0.0923 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8177 2.4407 -0.2571 28 1 4.0042 0.6976 0.0506 29 1 6.6251 1.4504 -2.4247 30 1 1.2098 3.9188 0.6258 31 1 2.9816 3.7531 0.7409 32 1 2.1801 5.1862 2.5705 33 1 1.0174 3.9351 3.0739 34 1 4.1451 1.8185 3.8039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765965609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:09 Heat of formation + Delta-G solvation = -95.785853 kcal Electronic energy + Delta-G solvation = -18052.995102 eV Core-core repulsion = 15177.787163 eV Total energy + Delta-G solvation = -2875.207939 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.62565 -40.25503 -38.10235 -36.41742 -34.84530 -33.95663 -31.51606 -29.66950 -27.23586 -24.88397 -24.31773 -23.87977 -22.18350 -19.83016 -18.95274 -18.49844 -18.08134 -17.21485 -16.82045 -16.16739 -15.91414 -15.84605 -15.46361 -15.31613 -14.68955 -14.17186 -14.02601 -13.62734 -13.44630 -12.94916 -12.76560 -12.55074 -12.40169 -12.37255 -12.17250 -11.78095 -11.58272 -11.42721 -11.33137 -11.25929 -11.18162 -10.59264 -9.08251 -8.19775 -6.28863 0.47264 1.40738 1.41311 1.54873 1.72409 1.86755 2.40050 2.99020 3.11675 3.17067 3.67718 3.78563 4.01705 4.17436 4.34734 4.47524 4.63339 4.78242 4.83814 4.91445 5.04842 5.06459 5.17837 5.27474 5.28015 5.34381 5.55792 5.66453 5.78996 6.05982 6.24006 6.37147 6.51927 6.81872 6.88136 7.40021 8.91259 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.007855 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.214728 B = 3563.935199 C = 4041.501398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.040 3.960 3 N -0.500 5.500 4 C 0.196 3.804 5 C -0.516 4.516 6 H 0.066 0.934 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.285 1.285 13 C 0.061 3.939 14 H 0.153 0.847 15 C -0.109 4.109 16 C -0.125 4.125 17 C 0.527 3.473 18 O -0.546 6.546 19 N -0.676 5.676 20 C 0.492 3.508 21 O -0.532 6.532 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.009 0.991 28 H -0.028 1.028 29 H 0.262 0.738 30 H 0.129 0.871 31 H 0.051 0.949 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 3.921 7.378 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 N -0.222 5.222 4 C 0.070 3.930 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.211 1.211 13 C -0.052 4.052 14 H 0.170 0.830 15 C -0.146 4.146 16 C -0.165 4.165 17 C 0.319 3.681 18 O -0.422 6.422 19 N -0.340 5.340 20 C 0.281 3.719 21 O -0.406 6.406 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.027 0.973 28 H -0.010 1.010 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -12.389 4.016 7.228 14.895 hybrid contribution 1.996 -1.137 0.008 2.297 sum -10.394 2.880 7.236 12.988 Atomic orbital electron populations 1.21709 0.92453 1.02072 1.02595 1.22210 0.97175 0.88852 1.00549 1.62581 1.22276 1.18938 1.18451 1.19579 0.83902 0.94431 0.95051 1.21488 0.93113 1.47067 0.93774 0.91569 1.25922 0.95185 0.95288 1.03571 1.70111 0.98613 1.51206 1.37896 0.85349 0.78572 0.77571 0.79221 1.18264 1.20353 1.21075 1.22511 0.97320 0.97413 0.87946 0.82953 1.21796 1.05189 0.90843 0.96814 1.22047 0.98639 1.02745 0.93029 1.21839 0.83047 0.79644 0.83619 1.90742 1.56405 1.62227 1.32848 1.45200 1.40461 1.16134 1.32225 1.23217 0.83874 0.84997 0.79802 1.90733 1.60180 1.20798 1.68920 0.91339 0.91995 0.91575 0.93106 0.94555 0.97264 1.01030 0.92958 0.85318 0.93055 0.84716 0.82948 0.75952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.96 71.98 0.72 -2.69 16 2 C 0.04 1.49 5.24 86.30 0.45 1.95 16 3 N -0.50 -19.56 4.29 -879.65 -3.77 -23.33 16 4 C 0.20 10.18 3.65 85.56 0.31 10.50 16 5 C -0.52 -28.88 8.35 25.60 0.21 -28.67 16 6 H 0.07 3.60 7.71 -2.91 -0.02 3.58 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.94 -57.35 13.29 21.45 0.28 -57.06 16 9 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.06 1.78 2.32 44.22 0.10 1.88 16 14 H 0.15 3.22 6.63 -2.39 -0.02 3.20 16 15 C -0.11 -2.57 5.48 30.76 0.17 -2.40 16 16 C -0.13 -2.15 6.07 29.89 0.18 -1.96 16 17 C 0.53 13.91 7.75 87.71 0.68 14.59 16 18 O -0.55 -17.49 17.88 -2.86 -0.05 -17.55 16 19 N -0.68 -20.27 5.10 -428.55 -2.18 -22.46 16 20 C 0.49 17.12 6.56 87.72 0.58 17.69 16 21 O -0.53 -23.34 13.35 -2.87 -0.04 -23.37 16 22 H 0.07 1.41 6.92 -2.39 -0.02 1.40 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.05 2.21 7.06 -2.39 -0.02 2.20 16 26 H 0.04 1.45 5.81 -2.39 -0.01 1.43 16 27 H 0.01 0.51 6.21 -2.39 -0.01 0.50 16 28 H -0.03 -1.69 6.23 -2.39 -0.01 -1.70 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.05 1.61 6.42 -2.39 -0.02 1.60 16 32 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.15 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.40 11.95 8.79 -92.71 -0.81 11.14 16 Total: -1.00 -74.60 276.40 0.44 -74.17 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.31 Total: 11.92 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 3.87 Total: 11.22 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -5.67 Total: -102.85 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.09 Total: -40.92 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -74.60 0.44 -74.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765965609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.618 kcal (2) G-P(sol) polarization free energy of solvation -74.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds