Wall clock time and date at job start Thu Apr 9 2020 12:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47403 * 2 1 4 4 C 1.50695 * 109.47136 * 120.00676 * 2 1 3 5 5 H 1.08005 * 119.99983 * 119.99547 * 4 2 1 6 6 C 1.37872 * 120.00303 * 299.99848 * 4 2 1 7 7 N 1.31515 * 119.99703 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00475 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46906 * 89.99878 * 8 6 4 10 10 H 1.48494 * 109.47187 * 209.99826 * 8 6 4 11 11 H 1.48499 * 109.46823 * 330.00297 * 8 6 4 12 12 N 1.46503 * 109.46663 * 240.00533 * 2 1 3 13 13 C 1.34775 * 120.00094 * 85.00349 * 12 2 1 14 14 O 1.21279 * 120.00059 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00250 * 179.97438 * 13 12 2 16 16 H 1.08996 * 109.99790 * 318.90633 * 15 13 12 17 17 C 1.54330 * 109.88012 * 80.00062 * 15 13 12 18 18 C 1.55157 * 102.94049 * 141.61275 * 17 15 13 19 19 C 1.54901 * 101.58260 * 324.49554 * 18 17 15 20 20 N 1.47019 * 109.88443 * 197.80566 * 15 13 12 21 21 C 1.34781 * 125.64719 * 61.68972 * 20 15 13 22 22 O 1.21282 * 119.99914 * 359.97236 * 21 20 15 23 23 H 1.09000 * 109.46947 * 299.99693 * 1 2 3 24 24 H 1.08998 * 109.46995 * 59.99041 * 1 2 3 25 25 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 26 26 H 0.97004 * 119.99870 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99849 * 264.99457 * 12 2 1 28 28 H 1.08996 * 110.71860 * 23.24329 * 17 15 13 29 29 H 1.09002 * 110.71679 * 259.97328 * 17 15 13 30 30 H 1.09002 * 111.00633 * 82.57450 * 18 17 15 31 31 H 1.09002 * 110.99939 * 206.38229 * 18 17 15 32 32 H 1.09004 * 110.36831 * 155.84850 * 19 18 17 33 33 H 1.09000 * 110.36793 * 278.06248 * 19 18 17 34 34 H 1.07996 * 120.00174 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2397 2.4826 7 7 0.9437 0.8299 2.6034 8 14 2.3214 -1.1208 4.0078 9 1 3.6298 -0.5464 4.4122 10 1 1.3432 -0.9498 5.1118 11 1 2.4858 -2.5666 3.7116 12 7 2.0182 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8582 1.1586 -2.4116 15 6 2.6497 -0.7282 -3.5876 16 1 3.4699 -1.3959 -3.3237 17 6 1.5033 -1.5348 -4.2333 18 6 1.7548 -1.3414 -5.7521 19 6 2.2830 0.1141 -5.7969 20 7 3.1052 0.2549 -4.5814 21 6 4.1089 1.1379 -4.4098 22 8 4.7207 1.1647 -3.3630 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7090 1.1610 3.4845 27 1 2.2490 -1.6317 -1.1528 28 1 0.5347 -1.1249 -3.9474 29 1 1.5727 -2.5883 -3.9620 30 1 2.5070 -2.0414 -6.1159 31 1 0.8278 -1.4389 -6.3171 32 1 2.8925 0.2692 -6.6872 33 1 1.4525 0.8198 -5.7790 34 1 4.3684 1.8216 -5.2046 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824689441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:16 Heat of formation + Delta-G solvation = -98.508308 kcal Electronic energy + Delta-G solvation = -17644.443860 eV Core-core repulsion = 14769.117866 eV Total energy + Delta-G solvation = -2875.325993 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49800 -39.66583 -38.12211 -36.65852 -34.38177 -32.61208 -31.54708 -29.76347 -27.38136 -25.52160 -23.76139 -22.39755 -21.81290 -20.79051 -19.09214 -18.16106 -17.97123 -17.19275 -16.86197 -16.18577 -15.79538 -15.51425 -15.15639 -14.60792 -14.36365 -14.20689 -13.92925 -13.72174 -13.29363 -12.99268 -12.96398 -12.80257 -12.57590 -12.29801 -12.14725 -12.10784 -11.74666 -11.16216 -11.03518 -10.81768 -10.62478 -9.78987 -9.65440 -8.20893 -6.39247 1.41313 1.43504 1.53827 1.62495 1.81714 2.13049 2.35770 2.69306 3.09060 3.52686 3.63566 3.91964 4.05356 4.21275 4.25206 4.58482 4.70409 4.79424 4.86570 4.87573 4.92723 5.04706 5.09827 5.23597 5.35810 5.40224 5.57645 5.64813 5.88086 6.06521 6.51253 6.68526 6.93010 7.14860 7.28672 7.53803 8.85776 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036890 B = 0.006058 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.823403 B = 4620.716537 C = 4837.968891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.272 3.728 3 H -0.015 1.015 4 C -0.549 4.549 5 H 0.072 0.928 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.257 1.257 12 N -0.705 5.705 13 C 0.491 3.509 14 O -0.597 6.597 15 C 0.112 3.888 16 H 0.100 0.900 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.093 3.907 20 N -0.611 5.611 21 C 0.501 3.499 22 O -0.609 6.609 23 H 0.065 0.935 24 H 0.010 0.990 25 H 0.046 0.954 26 H 0.266 0.734 27 H 0.404 0.596 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.064 0.936 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 -8.374 -19.228 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.168 3.832 3 H 0.002 0.998 4 C -0.587 4.587 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.180 1.180 12 N -0.354 5.354 13 C 0.277 3.723 14 O -0.478 6.478 15 C 0.004 3.996 16 H 0.117 0.883 17 C -0.155 4.155 18 C -0.153 4.153 19 C -0.028 4.028 20 N -0.346 5.346 21 C 0.274 3.726 22 O -0.487 6.487 23 H 0.084 0.916 24 H 0.029 0.971 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.238 0.762 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.082 0.918 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.982 -7.332 -18.577 19.996 hybrid contribution 0.258 -0.023 1.383 1.407 sum 1.240 -7.355 -17.194 18.742 Atomic orbital electron populations 1.21841 0.97756 0.99667 0.99413 1.18300 0.91424 0.91333 0.82126 0.99757 1.21554 1.32660 1.13608 0.90918 0.90988 1.25871 0.94798 0.95631 1.02502 1.70066 1.37020 1.23989 1.24675 0.85283 0.77694 0.79240 0.77742 1.20660 1.20469 1.18041 1.46243 1.65368 1.14115 1.09657 1.21667 0.77292 0.87309 0.85990 1.90592 1.52996 1.18324 1.85907 1.21681 0.99505 0.90905 0.87504 0.88258 1.22670 0.94982 1.00755 0.97069 1.22826 1.03796 0.95008 0.93670 1.22680 0.95001 0.98527 0.86579 1.49073 1.33719 1.35532 1.16313 1.23304 0.77456 0.80769 0.91094 1.90737 1.54362 1.70772 1.32858 0.91602 0.97067 0.93526 0.92478 0.76155 0.91718 0.86604 0.88112 0.86959 0.86282 0.91768 0.79837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.27 15.21 2.56 44.24 0.11 15.32 16 3 H -0.02 -1.05 7.58 -2.39 -0.02 -1.07 16 4 C -0.55 -30.95 8.73 25.60 0.22 -30.73 16 5 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -55.19 11.32 21.45 0.24 -54.95 16 8 Si 0.98 43.81 29.54 68.60 2.03 45.83 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 12 N -0.70 -31.97 5.07 -446.10 -2.26 -34.23 16 13 C 0.49 21.53 6.25 87.66 0.55 22.08 16 14 O -0.60 -32.15 15.76 -3.03 -0.05 -32.20 16 15 C 0.11 3.33 3.26 44.60 0.15 3.47 16 16 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 17 C -0.12 -2.23 6.47 31.78 0.21 -2.02 16 18 C -0.12 -1.26 7.08 31.98 0.23 -1.04 16 19 C 0.09 1.39 7.21 86.85 0.63 2.02 16 20 N -0.61 -16.25 2.75 -808.17 -2.23 -18.48 16 21 C 0.50 15.31 11.63 129.79 1.51 16.82 16 22 O -0.61 -27.00 16.97 -3.04 -0.05 -27.05 16 23 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 26 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 27 H 0.40 15.32 8.54 -92.71 -0.79 14.53 16 28 H 0.06 1.50 7.84 -2.39 -0.02 1.48 16 29 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.19 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -85.68 289.75 2.70 -82.98 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.31 Total: 17.17 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 4.71 Total: 20.93 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -4.24 Total: -107.66 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -0.10 Total: -59.25 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -85.68 2.70 -82.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824689441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.533 kcal (2) G-P(sol) polarization free energy of solvation -85.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds