Wall clock time and date at job start Thu Apr 9 2020 12:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.27642 * 125.77642 * 2 1 4 4 O 1.41370 * 113.17860 * 180.33362 * 3 2 1 5 5 C 1.44259 * 107.50444 * 342.62454 * 4 3 2 6 6 H 1.09002 * 111.01202 * 267.00518 * 5 4 3 7 7 C 1.50703 * 111.00903 * 143.17575 * 5 4 3 8 8 O 1.21279 * 120.00049 * 359.60128 * 7 5 4 9 9 N 1.34779 * 119.99541 * 179.60132 * 7 5 4 10 10 C 1.46499 * 120.00212 * 359.97438 * 9 7 5 11 11 C 1.46502 * 119.99726 * 179.97438 * 9 7 5 12 12 H 1.09000 * 109.47396 * 0.02562 * 11 9 7 13 13 C 1.52995 * 109.47349 * 239.99897 * 11 9 7 14 14 C 1.50700 * 109.46899 * 119.99914 * 11 9 7 15 15 H 1.07999 * 120.00552 * 359.97438 * 14 11 9 16 16 C 1.37879 * 119.99967 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99752 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00084 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.46811 * 60.00153 * 18 16 14 20 20 H 1.48499 * 109.46951 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47123 * 299.99953 * 18 16 14 22 22 C 1.51753 * 125.75263 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46982 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46952 * 119.97427 * 1 2 3 25 25 H 1.08994 * 109.47641 * 239.98085 * 1 2 3 26 26 H 1.09002 * 109.47391 * 270.00122 * 10 9 7 27 27 H 1.09001 * 109.46813 * 150.00179 * 10 9 7 28 28 H 1.09004 * 109.47041 * 30.00306 * 10 9 7 29 29 H 1.09000 * 109.47154 * 59.99586 * 13 11 9 30 30 H 1.08998 * 109.47159 * 180.02562 * 13 11 9 31 31 H 1.09003 * 109.46919 * 300.00394 * 13 11 9 32 32 H 0.97008 * 119.99487 * 180.02562 * 17 16 14 33 33 H 1.09011 * 110.79737 * 77.03032 * 22 2 1 34 34 H 1.08992 * 110.84578 * 313.50216 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2532 1.0356 0.0000 4 8 3.6328 0.7272 -0.0076 5 6 3.7719 -0.6502 0.3979 6 1 3.9331 -0.7267 1.4733 7 6 4.8834 -1.3275 -0.3616 8 8 5.5149 -0.7091 -1.1920 9 7 5.1755 -2.6205 -0.1181 10 6 4.4129 -3.3673 0.8854 11 6 6.2556 -3.2791 -0.8569 12 1 6.7040 -2.5707 -1.5534 13 6 5.6902 -4.4700 -1.6333 14 6 7.3041 -3.7629 0.1114 15 1 7.1788 -3.5961 1.1711 16 6 8.4241 -4.4176 -0.3556 17 7 8.5771 -4.6203 -1.6460 18 14 9.7242 -5.0167 0.8446 19 1 9.1141 -5.9820 1.7940 20 1 10.8190 -5.6844 0.0957 21 1 10.2726 -3.8606 1.5981 22 6 2.3936 -1.2315 0.0006 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5134 -0.8902 25 1 -0.3634 -0.5141 0.8897 26 1 4.8942 -3.2648 1.8580 27 1 4.3788 -4.4204 0.6061 28 1 3.3983 -2.9725 0.9386 29 1 4.9317 -4.1201 -2.3336 30 1 6.4939 -4.9603 -2.1826 31 1 5.2420 -5.1783 -0.9364 32 1 9.3649 -5.0813 -1.9745 33 1 2.4342 -1.6797 -0.9923 34 1 2.0512 -1.9557 0.7397 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826096821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:23 Heat of formation + Delta-G solvation = -7.814677 kcal Electronic energy + Delta-G solvation = -17624.981797 eV Core-core repulsion = 14753.588574 eV Total energy + Delta-G solvation = -2871.393222 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52646 -38.51667 -35.46066 -33.82438 -33.08067 -31.12306 -29.05025 -28.52953 -26.38850 -25.27053 -24.31138 -21.24177 -19.84078 -18.57648 -17.12910 -16.58261 -16.19041 -15.60977 -15.40404 -14.61502 -14.43287 -13.95832 -13.45552 -13.15079 -13.03955 -12.73525 -12.67082 -12.47050 -12.12169 -11.66746 -11.60252 -11.49330 -11.08771 -10.85969 -10.76866 -10.62453 -10.31232 -10.20563 -9.63446 -9.23672 -8.93557 -8.46378 -7.71059 -6.10865 -4.19378 1.74354 2.84644 3.16468 3.26205 3.31654 3.33620 3.80250 4.00165 4.36131 4.47155 4.55075 4.79535 5.01154 5.18662 5.19969 5.20509 5.23356 5.44999 5.55924 5.66763 5.92340 5.96218 6.18286 6.68785 6.73531 6.97204 7.28395 7.38690 7.44887 7.65624 7.95389 8.12508 8.39453 8.75604 8.91923 9.47134 10.94500 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.045664 B = 0.005752 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.020787 B = 4866.998650 C = 4938.050159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.077 3.923 3 N -0.294 5.294 4 O -0.169 6.169 5 C 0.026 3.974 6 H 0.106 0.894 7 C 0.509 3.491 8 O -0.527 6.527 9 N -0.586 5.586 10 C 0.076 3.924 11 C 0.258 3.742 12 H 0.064 0.936 13 C -0.147 4.147 14 C -0.528 4.528 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.143 4.143 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.011 0.989 30 H 0.095 0.905 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.107 0.893 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.904 1.362 5.378 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 N -0.035 5.035 4 O -0.187 6.187 5 C -0.037 4.037 6 H 0.124 0.876 7 C 0.292 3.708 8 O -0.403 6.403 9 N -0.319 5.319 10 C -0.068 4.068 11 C 0.159 3.841 12 H 0.082 0.918 13 C -0.205 4.205 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.182 4.182 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.114 0.886 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.179 2.812 4.726 16.145 hybrid contribution 0.870 -1.426 0.842 1.870 sum -14.309 1.386 5.568 15.417 Atomic orbital electron populations 1.20412 0.85261 1.04530 1.04002 1.26280 0.98103 0.92204 0.95044 1.77861 0.89752 1.23447 1.12437 1.91400 1.14533 1.24974 1.87789 1.23638 0.95246 0.84345 1.00473 0.87600 1.19795 0.84414 0.82758 0.83807 1.90709 1.51534 1.63809 1.34245 1.48193 1.35440 1.09323 1.38991 1.21792 0.94134 0.98425 0.92441 1.19004 0.82564 0.91099 0.91451 0.91788 1.22099 1.00198 0.99369 0.98838 1.21255 1.04414 1.37574 0.93415 0.92271 1.24895 0.97851 0.95664 0.95324 1.69868 1.28625 1.41722 1.12320 0.86523 0.80972 0.78900 0.80805 1.20221 1.21124 1.20205 1.23170 0.90871 0.98601 1.05604 0.89996 0.89242 0.89318 0.92971 0.90342 0.92775 0.96949 0.88632 0.94991 0.92549 0.87502 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.49 36.00 0.38 -0.18 16 2 C 0.08 0.90 7.45 -78.54 -0.59 0.32 16 3 N -0.29 -4.69 12.45 35.66 0.44 -4.25 16 4 O -0.17 -3.30 11.83 -30.19 -0.36 -3.65 16 5 C 0.03 0.42 3.32 -26.95 -0.09 0.33 16 6 H 0.11 1.52 8.03 -51.93 -0.42 1.11 16 7 C 0.51 10.92 7.03 -10.98 -0.08 10.84 16 8 O -0.53 -13.95 15.91 -13.28 -0.21 -14.16 16 9 N -0.59 -12.25 2.75 -175.26 -0.48 -12.73 16 10 C 0.08 1.17 9.39 59.85 0.56 1.74 16 11 C 0.26 6.54 2.63 -69.08 -0.18 6.36 16 12 H 0.06 1.90 6.90 -51.93 -0.36 1.55 16 13 C -0.15 -3.41 8.95 37.16 0.33 -3.07 16 14 C -0.53 -14.14 8.37 -34.44 -0.29 -14.43 16 15 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.14 -1.71 5.44 -26.43 -0.14 -1.85 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 28 H 0.05 0.62 4.27 -51.93 -0.22 0.40 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.11 1.35 7.90 -51.92 -0.41 0.94 16 34 H 0.11 0.92 6.58 -51.93 -0.34 0.58 16 LS Contribution 283.02 15.07 4.27 4.27 Total: -1.00 -33.91 283.02 -5.32 -39.23 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.39 Total: -2.00 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.19 Total: 1.72 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.59 Total: -41.30 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.57 Total: -17.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.91 -5.32 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826096821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.418 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds