Wall clock time and date at job start Thu Apr 9 2020 12:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47025 * 2 1 4 4 C 1.50694 * 110.43704 * 302.07510 * 3 2 1 5 5 O 1.21283 * 120.00483 * 127.57711 * 4 3 2 6 6 N 1.34779 * 120.00028 * 307.31121 * 4 3 2 7 7 C 1.46497 * 120.00294 * 175.07788 * 6 4 3 8 8 C 1.50699 * 109.47352 * 179.97438 * 7 6 4 9 9 H 1.08004 * 119.99971 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00064 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00291 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99841 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47496 * 89.99803 * 12 10 8 14 14 H 1.48498 * 109.47101 * 210.00121 * 12 10 8 15 15 H 1.48503 * 109.47208 * 329.99578 * 12 10 8 16 16 C 1.54630 * 110.59996 * 179.45768 * 3 2 1 17 17 C 1.54479 * 101.76498 * 266.06306 * 16 3 2 18 18 N 1.46757 * 105.47481 * 334.58633 * 17 16 3 19 19 C 1.34420 * 111.30332 * 17.01089 * 18 17 16 20 20 O 1.21274 * 124.94695 * 179.55475 * 19 18 17 21 21 H 1.08997 * 109.46790 * 175.09576 * 1 2 3 22 22 H 1.08992 * 109.47407 * 295.09546 * 1 2 3 23 23 H 1.09004 * 109.47144 * 55.09762 * 1 2 3 24 24 H 1.09004 * 109.47717 * 240.00030 * 2 1 3 25 25 H 1.09004 * 109.47633 * 119.99638 * 2 1 3 26 26 H 0.97004 * 119.99607 * 355.07079 * 6 4 3 27 27 H 1.09002 * 109.46756 * 299.99664 * 7 6 4 28 28 H 1.08993 * 109.47195 * 59.99306 * 7 6 4 29 29 H 0.96994 * 120.00506 * 179.97438 * 11 10 8 30 30 H 1.09000 * 110.97143 * 24.17971 * 16 3 2 31 31 H 1.09000 * 110.96897 * 147.94463 * 16 3 2 32 32 H 1.09000 * 110.24642 * 215.58157 * 17 16 3 33 33 H 1.09007 * 110.24488 * 93.58488 * 17 16 3 34 34 H 0.97001 * 124.35353 * 196.99719 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5083 2.1886 -1.1965 5 8 0.9414 3.2502 -1.0466 6 7 1.6676 1.6787 -2.4339 7 6 1.0582 2.3477 -3.5860 8 6 1.3849 1.5821 -4.8422 9 1 1.9867 0.6869 -4.7880 10 6 0.9155 2.0245 -6.0609 11 7 0.1823 3.1142 -6.1269 12 14 1.3211 1.0759 -7.6181 13 1 0.2706 0.0554 -7.8640 14 1 1.3789 2.0136 -8.7681 15 1 2.6362 0.4044 -7.4604 16 6 3.5859 1.4730 0.0137 17 6 3.8853 1.5878 1.5248 18 7 2.6966 2.2162 2.1129 19 6 1.6437 2.1442 1.2803 20 8 0.5370 2.5779 1.5208 21 1 -0.3633 -1.0239 -0.0879 22 1 -0.3634 0.4358 0.9306 23 1 -0.3633 0.5880 -0.8428 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.1859 0.8687 -2.5617 27 1 -0.0231 2.3855 -3.4539 28 1 1.4500 3.3616 -3.6665 29 1 -0.1476 3.4256 -6.9842 30 1 3.9979 0.5511 -0.3966 31 1 3.9637 2.3415 -0.5259 32 1 4.7628 2.2131 1.6891 33 1 4.0405 0.5983 1.9549 34 1 2.6735 2.6302 2.9899 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867873414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:11:57 Heat of formation + Delta-G solvation = -84.104151 kcal Electronic energy + Delta-G solvation = -17771.433119 eV Core-core repulsion = 14896.731736 eV Total energy + Delta-G solvation = -2874.701382 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.99328 -38.14128 -36.30392 -34.26540 -33.92191 -32.16939 -30.17067 -27.75544 -26.82863 -23.11767 -22.88773 -22.10466 -20.89298 -18.94583 -17.49985 -16.76051 -16.06963 -15.68430 -15.02749 -14.79400 -14.53799 -14.22680 -13.94066 -13.38506 -13.02556 -12.91536 -12.83199 -12.33702 -12.05820 -11.85782 -11.63354 -11.51335 -11.02754 -10.96901 -10.90261 -10.70040 -10.30856 -9.54165 -9.38130 -9.14685 -8.91572 -8.72861 -7.86640 -6.15711 -4.22930 2.74138 3.24378 3.27807 3.30820 3.32709 3.33726 4.03761 4.24101 4.33628 4.47025 4.73239 4.87720 5.12191 5.20393 5.27137 5.31492 5.44626 5.56868 5.67911 5.79379 5.95231 6.03899 6.20344 6.54677 6.83066 7.01796 7.32093 7.43889 7.53378 7.66319 7.97668 8.39341 8.61836 8.78446 9.09600 9.43610 10.94503 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.038114 B = 0.005924 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.468446 B = 4725.722709 C = 4817.647864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.096 4.096 3 C -0.120 4.120 4 C 0.520 3.480 5 O -0.534 6.534 6 N -0.708 5.708 7 C 0.251 3.749 8 C -0.542 4.542 9 H 0.063 0.937 10 C 0.064 3.936 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C -0.125 4.125 17 C 0.106 3.894 18 N -0.739 5.739 19 C 0.544 3.456 20 O -0.499 6.499 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.389 0.611 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.266 0.734 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 -8.046 13.492 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.134 4.134 3 C -0.127 4.127 4 C 0.302 3.698 5 O -0.411 6.411 6 N -0.356 5.356 7 C 0.130 3.870 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.163 4.163 17 C -0.019 4.019 18 N -0.397 5.397 19 C 0.328 3.672 20 O -0.371 6.371 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.222 0.778 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.261 -6.956 13.437 17.239 hybrid contribution 0.543 -0.647 -0.616 1.045 sum 8.803 -7.603 12.822 17.312 Atomic orbital electron populations 1.21844 0.94428 1.01831 1.03573 1.21406 0.97543 0.91431 1.02993 1.21786 0.97447 0.98460 0.94989 1.19549 0.80581 0.85777 0.83847 1.90739 1.42735 1.22021 1.85627 1.46360 1.53273 1.29199 1.06814 1.19115 0.93736 0.93271 0.80859 1.21203 1.34369 1.11163 0.91337 0.91883 1.24953 0.94746 0.95050 0.99268 1.69973 1.34173 1.22093 1.25977 0.86420 0.78759 0.79522 0.82222 1.20465 1.21037 1.19756 1.22742 0.92594 1.04888 0.96059 1.22014 0.88348 0.98271 0.93281 1.46109 1.11944 1.61216 1.20402 1.20038 0.84149 0.78094 0.84899 1.90745 1.21894 1.46914 1.77524 0.92316 0.92006 0.91613 0.90059 0.91121 0.77788 0.95540 0.95502 0.92432 0.88250 0.89278 0.90182 0.90964 0.75226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.38 37.16 0.35 -2.06 16 2 C -0.10 -1.20 4.78 -26.73 -0.13 -1.33 16 3 C -0.12 -1.80 0.51 -155.67 -0.08 -1.88 16 4 C 0.52 10.78 5.06 -10.99 -0.06 10.72 16 5 O -0.53 -13.91 15.53 -12.07 -0.19 -14.10 16 6 N -0.71 -14.76 5.38 -61.48 -0.33 -15.09 16 7 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 8 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 9 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.88 -26.16 13.29 55.43 0.74 -25.42 16 12 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 C -0.12 -1.31 6.22 -25.10 -0.16 -1.47 16 17 C 0.11 0.86 7.78 -3.13 -0.02 0.84 16 18 N -0.74 -8.51 6.24 -59.20 -0.37 -8.88 16 19 C 0.54 9.04 6.35 -10.86 -0.07 8.98 16 20 O -0.50 -10.57 15.94 -12.06 -0.19 -10.76 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.06 1.00 6.81 -51.93 -0.35 0.65 16 23 H 0.06 1.21 7.03 -51.93 -0.37 0.85 16 24 H 0.08 0.90 7.44 -51.93 -0.39 0.51 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.39 6.81 7.57 -40.82 -0.31 6.50 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.10 0.76 7.91 -51.93 -0.41 0.34 16 31 H 0.09 1.05 7.91 -51.93 -0.41 0.63 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.41 3.88 8.96 -40.82 -0.37 3.51 16 LS Contribution 285.87 15.07 4.31 4.31 Total: -1.00 -35.77 285.87 -6.34 -42.10 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.67 Total: 4.96 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -0.61 Total: 7.22 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.04 Total: -49.39 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.38 Total: -24.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.77 -6.34 -42.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.001 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds