Wall clock time and date at job start Thu Apr 9 2020 12:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 N 1.46497 * 109.47058 * 120.00057 * 2 1 3 5 5 C 1.34417 * 124.35094 * 300.02103 * 4 2 1 6 6 O 1.21283 * 124.94355 * 0.43141 * 5 4 2 7 7 C 1.51286 * 110.11517 * 180.16242 * 5 4 2 8 8 C 1.54623 * 104.19583 * 16.49747 * 7 5 4 9 9 C 1.46762 * 124.34850 * 120.19340 * 4 2 1 10 10 H 1.09004 * 110.38933 * 44.10688 * 9 4 2 11 11 C 1.50701 * 110.11710 * 282.18193 * 9 4 2 12 12 O 1.21287 * 119.99803 * 2.50366 * 11 9 4 13 13 N 1.34774 * 119.99998 * 182.49907 * 11 9 4 14 14 C 1.37095 * 119.99949 * 179.97438 * 13 11 9 15 15 H 1.08003 * 120.00238 * 0.02562 * 14 13 11 16 16 C 1.38952 * 120.00123 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00047 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47381 * 60.00064 * 18 16 14 20 20 H 1.48505 * 109.46895 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46798 * 299.99778 * 18 16 14 22 22 H 1.09004 * 109.47122 * 300.00105 * 1 2 3 23 23 H 1.09001 * 109.46967 * 59.99598 * 1 2 3 24 24 H 1.09002 * 109.47320 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47122 * 239.99895 * 2 1 3 26 26 H 1.08997 * 109.46935 * 60.00202 * 3 2 1 27 27 H 1.08997 * 109.47185 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47427 * 300.00120 * 3 2 1 29 29 H 1.09000 * 110.48290 * 135.17506 * 7 5 4 30 30 H 1.09003 * 110.48423 * 257.68608 * 7 5 4 31 31 H 1.09006 * 110.96977 * 93.32110 * 8 7 5 32 32 H 1.09001 * 110.96989 * 217.04795 * 8 7 5 33 33 H 0.97003 * 120.00097 * 359.97438 * 13 11 9 34 34 H 0.96999 * 119.99962 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7476 -0.3086 2.4561 6 8 1.0635 0.6453 2.7610 7 6 2.4152 -1.2455 3.4386 8 6 3.4698 -1.9945 2.5916 9 6 2.8688 -1.8864 1.1727 10 1 3.6628 -1.7733 0.4344 11 6 2.0398 -3.1062 0.8631 12 8 0.8546 -2.9913 0.6326 13 7 2.6153 -4.3247 0.8423 14 6 1.8610 -5.4344 0.5612 15 1 0.8056 -5.3322 0.3560 16 6 2.4543 -6.6907 0.5402 17 7 3.7383 -6.8152 0.7904 18 14 1.4265 -8.2027 0.1565 19 1 0.8297 -8.0653 -1.1962 20 1 2.2891 -9.4108 0.1971 21 1 0.3438 -8.3340 1.1644 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 2.8976 -0.6809 4.2365 30 1 1.6888 -1.9448 3.8527 31 1 4.4380 -1.4963 2.6443 32 1 3.5519 -3.0360 2.9028 33 1 3.5633 -4.4165 1.0262 34 1 4.1525 -7.6922 0.7754 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874261230.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:04 Heat of formation + Delta-G solvation = -76.633913 kcal Electronic energy + Delta-G solvation = -17924.846841 eV Core-core repulsion = 15050.469393 eV Total energy + Delta-G solvation = -2874.377449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.48130 -37.95676 -35.77313 -34.66370 -33.98868 -31.32590 -29.71153 -27.89304 -26.84759 -24.80217 -22.42759 -22.01164 -19.64837 -18.45813 -18.00702 -16.51143 -16.33129 -15.23909 -14.97898 -14.41089 -14.00348 -13.96429 -13.68904 -13.32144 -13.11549 -12.81853 -12.57169 -12.32343 -11.82208 -11.63635 -11.48313 -11.27829 -11.07686 -10.98666 -10.87353 -10.73676 -10.49998 -10.30289 -9.59165 -9.25425 -8.94135 -8.07096 -8.02084 -6.50967 -3.92189 2.95104 3.13358 3.21091 3.23968 3.30338 3.72454 4.10538 4.61744 4.75137 4.79841 5.13344 5.18349 5.24959 5.37068 5.42866 5.53279 5.74372 5.84569 5.86662 5.95484 6.01723 6.08108 6.15236 6.23183 6.25772 6.42449 6.76949 7.00514 7.46550 7.51219 7.94973 8.48873 8.57090 9.07984 9.41885 9.92713 10.65931 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036232 B = 0.006641 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.621769 B = 4215.311895 C = 4519.092416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.160 3.840 3 C -0.165 4.165 4 N -0.583 5.583 5 C 0.525 3.475 6 O -0.543 6.543 7 C -0.155 4.155 8 C -0.123 4.123 9 C 0.118 3.882 10 H 0.098 0.902 11 C 0.426 3.574 12 O -0.579 6.579 13 N -0.555 5.555 14 C -0.302 4.302 15 H 0.103 0.897 16 C 0.026 3.974 17 N -0.899 5.899 18 Si 0.930 3.070 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.393 0.607 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 8.863 0.750 9.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 C -0.223 4.223 4 N -0.315 5.315 5 C 0.313 3.687 6 O -0.421 6.421 7 C -0.195 4.195 8 C -0.161 4.161 9 C 0.010 3.990 10 H 0.116 0.884 11 C 0.211 3.789 12 O -0.463 6.463 13 N -0.191 5.191 14 C -0.432 4.432 15 H 0.121 0.879 16 C -0.176 4.176 17 N -0.539 5.539 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.199 1.199 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.227 0.773 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.897 9.297 0.671 9.512 hybrid contribution 0.193 -1.081 -0.210 1.118 sum 2.090 8.216 0.460 8.490 Atomic orbital electron populations 1.22165 0.94581 1.04021 1.01668 1.20803 0.95053 0.91777 0.86536 1.22196 1.00845 0.96358 1.02895 1.47973 1.50664 1.26782 1.06100 1.20730 0.79791 0.84332 0.83835 1.90634 1.40018 1.29867 1.81627 1.22324 0.99613 0.99189 0.98338 1.22645 0.98045 1.02975 0.92460 1.21572 0.92534 0.85766 0.99175 0.88406 1.20081 0.88855 0.84336 0.85658 1.90522 1.15657 1.85596 1.54558 1.41846 1.11606 1.04878 1.60798 1.19655 0.94866 0.83867 1.44768 0.87949 1.25260 0.96028 0.99232 0.97122 1.69590 1.10042 1.25518 1.48780 0.85923 0.79175 0.79926 0.79258 1.19878 1.20888 1.19854 0.91792 0.92644 0.90315 0.89886 0.91205 0.92834 0.91791 0.88401 0.87813 0.89657 0.88408 0.77324 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.19 37.16 0.34 -2.49 16 2 C 0.16 2.57 3.26 -67.93 -0.22 2.35 16 3 C -0.16 -2.21 9.20 37.16 0.34 -1.87 16 4 N -0.58 -10.02 2.03 -158.67 -0.32 -10.35 16 5 C 0.52 9.38 7.41 -10.86 -0.08 9.30 16 6 O -0.54 -10.98 15.12 5.55 0.08 -10.90 16 7 C -0.15 -2.26 6.85 -26.74 -0.18 -2.45 16 8 C -0.12 -1.69 6.65 -25.10 -0.17 -1.85 16 9 C 0.12 1.96 3.46 -68.16 -0.24 1.73 16 10 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 11 C 0.43 9.38 7.12 -10.99 -0.08 9.30 16 12 O -0.58 -14.88 14.52 5.55 0.08 -14.80 16 13 N -0.55 -13.04 4.99 -10.96 -0.05 -13.09 16 14 C -0.30 -8.00 9.68 -14.93 -0.14 -8.15 16 15 H 0.10 2.87 7.16 -52.48 -0.38 2.50 16 16 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -23.22 13.05 55.50 0.72 -22.50 16 18 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H 0.06 1.17 6.77 -51.93 -0.35 0.82 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 1.58 6.76 -51.93 -0.35 1.23 16 25 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 26 H 0.07 1.06 6.80 -51.93 -0.35 0.71 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 1.41 7.47 -51.93 -0.39 1.02 16 33 H 0.39 8.72 7.69 -40.82 -0.31 8.40 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 284.91 15.07 4.29 4.29 Total: -1.00 -30.76 284.91 -5.39 -36.15 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.65 Total: 9.44 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -0.52 Total: 6.44 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.35 Total: -45.93 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: 0.16 Total: -25.70 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.76 -5.39 -36.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874261230.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.488 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds