Wall clock time and date at job start Thu Apr 9 2020 12:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46885 * 2 1 4 4 H 1.08997 * 109.59451 * 332.01137 * 3 2 1 5 5 C 1.51347 * 109.59601 * 211.54481 * 3 2 1 6 6 O 1.21278 * 120.34536 * 128.49772 * 5 3 2 7 7 N 1.34242 * 119.29992 * 308.51915 * 5 3 2 8 8 C 1.46699 * 120.37420 * 357.11529 * 7 5 3 9 9 C 1.53033 * 109.06981 * 288.73336 * 8 7 5 10 10 C 1.52447 * 110.17851 * 88.67976 * 9 8 7 11 11 N 1.46067 * 111.51173 * 297.33105 * 10 9 8 12 12 C 1.34776 * 119.81203 * 242.96154 * 11 10 9 13 13 O 1.21691 * 120.00036 * 4.82683 * 12 11 10 14 14 C 1.46375 * 120.00285 * 184.83120 * 12 11 10 15 15 H 1.08001 * 119.99724 * 5.22496 * 14 12 11 16 16 C 1.40039 * 120.00262 * 185.23367 * 14 12 11 17 17 N 1.30675 * 120.00243 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00175 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47034 * 89.99965 * 18 16 14 20 20 H 1.48496 * 109.47266 * 209.99490 * 18 16 14 21 21 H 1.48496 * 109.47130 * 329.99660 * 18 16 14 22 22 H 1.09005 * 109.46968 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47120 * 300.00095 * 1 2 3 24 24 H 1.09001 * 109.47639 * 60.00597 * 1 2 3 25 25 H 1.09003 * 109.47397 * 239.99510 * 2 1 3 26 26 H 1.09004 * 109.47173 * 119.99603 * 2 1 3 27 27 H 0.97004 * 119.81103 * 177.14528 * 7 5 3 28 28 H 1.08995 * 109.54229 * 168.84743 * 8 7 5 29 29 H 1.09002 * 109.60363 * 48.64491 * 8 7 5 30 30 H 1.08999 * 109.35664 * 328.45789 * 9 8 7 31 31 H 1.09007 * 109.35279 * 208.89219 * 9 8 7 32 32 H 1.09001 * 109.07674 * 176.81001 * 10 9 8 33 33 H 1.09000 * 109.01912 * 57.81159 * 10 9 8 34 34 H 0.96992 * 120.00587 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3068 2.0894 -0.4819 5 6 3.3547 1.5161 -0.7459 6 8 3.5120 2.3295 -1.6317 7 7 4.3448 0.6713 -0.4171 8 6 4.1776 -0.2703 0.6954 9 6 4.2005 0.5052 2.0145 10 6 2.7935 0.9657 2.3783 11 7 2.2570 1.8877 1.3805 12 6 1.9601 3.1550 1.7303 13 8 2.2205 3.5540 2.8501 14 6 1.3244 4.0514 0.7634 15 1 1.0165 3.6747 -0.2008 16 6 1.1156 5.3974 1.0885 17 7 1.4878 5.8531 2.2553 18 14 0.3049 6.5415 -0.1457 19 1 -1.1665 6.5225 0.0540 20 1 0.8133 7.9227 0.0515 21 1 0.6234 6.0889 -1.5237 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.1756 0.6838 -0.9176 28 1 4.9912 -0.9955 0.6846 29 1 3.2247 -0.7900 0.5946 30 1 4.8498 1.3746 1.9113 31 1 4.5856 -0.1387 2.8054 32 1 2.8214 1.4655 3.3465 33 1 2.1411 0.0950 2.4458 34 1 1.3429 6.7853 2.4807 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886505645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:08 Heat of formation + Delta-G solvation = -56.243752 kcal Electronic energy + Delta-G solvation = -18513.081242 eV Core-core repulsion = 15639.587977 eV Total energy + Delta-G solvation = -2873.493265 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.21238 -37.45556 -35.92499 -34.20351 -32.79274 -32.08433 -30.68929 -26.82822 -26.50688 -24.80589 -22.86017 -20.66569 -19.93721 -18.93313 -17.42467 -16.78656 -15.66451 -15.55989 -14.96215 -14.39026 -14.17511 -13.70994 -13.40280 -13.28309 -13.06955 -12.40927 -12.25308 -12.22233 -11.75038 -11.46656 -11.26525 -11.08169 -10.94016 -10.78383 -10.57295 -10.32391 -10.17585 -9.82810 -9.43987 -8.82816 -8.67035 -7.64208 -7.36767 -6.19810 -4.63397 3.07758 3.17861 3.25323 3.31999 3.69818 4.12966 4.47624 4.51902 4.89732 5.03383 5.11893 5.26272 5.33832 5.52517 5.61967 5.73071 5.84134 5.85790 5.98532 6.02711 6.10589 6.21275 6.33193 6.48919 6.55692 6.66611 7.20550 7.47694 7.49842 7.64094 8.10045 8.30250 8.72232 9.04053 9.30739 10.53044 10.72778 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025503 B = 0.009444 C = 0.008838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.661584 B = 2964.091564 C = 3167.532729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.139 3.861 4 H 0.128 0.872 5 C 0.513 3.487 6 O -0.541 6.541 7 N -0.730 5.730 8 C 0.087 3.913 9 C -0.159 4.159 10 C 0.111 3.889 11 N -0.626 5.626 12 C 0.556 3.444 13 O -0.572 6.572 14 C -0.536 4.536 15 H 0.074 0.926 16 C 0.089 3.911 17 N -0.768 5.768 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.261 1.261 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.390 0.610 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -13.530 -3.388 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.030 3.970 4 H 0.145 0.855 5 C 0.298 3.702 6 O -0.416 6.416 7 N -0.384 5.384 8 C -0.037 4.037 9 C -0.199 4.199 10 C -0.013 4.013 11 N -0.366 5.366 12 C 0.363 3.637 13 O -0.455 6.455 14 C -0.573 4.573 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.397 5.397 18 Si 0.729 3.271 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.185 1.185 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.225 0.775 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.492 -12.689 -2.979 13.119 hybrid contribution 0.218 0.505 -0.782 0.956 sum 1.710 -12.184 -3.761 12.866 Atomic orbital electron populations 1.21770 0.94823 1.01072 1.02896 1.22288 0.97265 0.96246 1.02501 1.21434 0.93364 0.96658 0.85529 0.85481 1.21716 0.87034 0.78983 0.82505 1.90699 1.82515 1.35935 1.32430 1.46023 1.18104 1.39066 1.35188 1.22214 1.03773 0.91548 0.86178 1.22375 0.99797 1.00798 0.96914 1.20903 0.91868 0.93350 0.95137 1.47986 1.69114 1.13013 1.06457 1.18321 0.78472 0.78598 0.88266 1.90593 1.58285 1.73594 1.22985 1.20981 1.40971 0.93821 1.01496 0.90813 1.25706 0.93750 0.98512 0.95132 1.70004 1.35166 1.14920 1.19579 0.86397 0.79583 0.79342 0.81784 1.19648 1.20431 1.18510 0.93045 0.91803 0.92473 0.91569 0.89402 0.77489 0.90613 0.88651 0.91090 0.90745 0.89177 0.93253 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.73 37.16 0.36 -1.60 16 2 C -0.15 -2.02 3.93 -26.73 -0.11 -2.12 16 3 C 0.14 2.67 2.35 -68.67 -0.16 2.51 16 4 H 0.13 2.73 5.16 -51.93 -0.27 2.46 16 5 C 0.51 10.13 6.85 -10.91 -0.07 10.06 16 6 O -0.54 -12.92 17.95 5.56 0.10 -12.82 16 7 N -0.73 -11.04 5.29 -60.04 -0.32 -11.36 16 8 C 0.09 1.03 6.33 -3.92 -0.02 1.01 16 9 C -0.16 -2.29 5.92 -27.00 -0.16 -2.45 16 10 C 0.11 2.00 5.56 -4.56 -0.03 1.97 16 11 N -0.63 -13.77 2.59 -169.26 -0.44 -14.20 16 12 C 0.56 15.76 7.59 -12.99 -0.10 15.66 16 13 O -0.57 -18.27 14.35 5.20 0.07 -18.20 16 14 C -0.54 -15.40 8.82 -35.63 -0.31 -15.72 16 15 H 0.07 2.00 5.71 -52.49 -0.30 1.70 16 16 C 0.09 2.53 5.50 -17.37 -0.10 2.44 16 17 N -0.77 -23.26 11.84 55.55 0.66 -22.60 16 18 Si 0.90 20.93 29.56 -169.99 -5.02 15.91 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.26 -6.01 7.11 56.52 0.40 -5.60 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 25 H 0.07 0.82 7.70 -51.93 -0.40 0.42 16 26 H 0.09 1.10 3.43 -51.93 -0.18 0.93 16 27 H 0.39 5.26 8.93 -40.82 -0.36 4.90 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 1.05 3.66 -51.93 -0.19 0.86 16 30 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 31 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.09 1.87 6.87 -51.93 -0.36 1.52 16 33 H 0.05 0.74 6.34 -51.93 -0.33 0.41 16 34 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 LS Contribution 270.27 15.07 4.07 4.07 Total: -1.00 -36.25 270.27 -5.62 -41.87 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.05 Total: 5.57 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -0.70 Total: 11.75 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.10 Total: -48.16 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: 0.17 Total: -31.02 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -36.25 -5.62 -41.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886505645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.371 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds