Wall clock time and date at job start Thu Apr 9 2020 12:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47416 * 2 1 4 4 H 1.09001 * 109.72421 * 28.00786 * 3 2 1 5 5 C 1.50769 * 109.50753 * 148.06391 * 3 2 1 6 6 O 1.21281 * 120.34226 * 231.63998 * 5 3 2 7 7 N 1.34245 * 119.30960 * 51.73999 * 5 3 2 8 8 C 1.46703 * 120.36413 * 2.75466 * 7 5 3 9 9 C 1.53038 * 109.07333 * 71.29261 * 8 7 5 10 10 C 1.52444 * 110.17123 * 271.31987 * 9 8 7 11 11 N 1.46062 * 111.51716 * 62.66588 * 10 9 8 12 12 C 1.34784 * 119.81088 * 117.06116 * 11 10 9 13 13 O 1.21681 * 119.99683 * 354.21571 * 12 11 10 14 14 C 1.46370 * 119.99687 * 174.48744 * 12 11 10 15 15 H 1.08008 * 120.00395 * 335.91098 * 14 12 11 16 16 C 1.40052 * 120.00051 * 155.91094 * 14 12 11 17 17 N 1.30664 * 120.00285 * 172.07244 * 16 14 12 18 18 Si 1.86802 * 119.99576 * 352.07559 * 16 14 12 19 19 H 1.48498 * 109.47437 * 93.07573 * 18 16 14 20 20 H 1.48510 * 109.47031 * 213.07613 * 18 16 14 21 21 H 1.48497 * 109.47358 * 333.07324 * 18 16 14 22 22 H 1.08999 * 109.46950 * 59.99586 * 1 2 3 23 23 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46713 * 299.99896 * 1 2 3 25 25 H 1.09006 * 109.46862 * 239.99570 * 2 1 3 26 26 H 1.08999 * 109.46950 * 120.00414 * 2 1 3 27 27 H 0.96993 * 119.82074 * 182.77084 * 7 5 3 28 28 H 1.08998 * 109.54047 * 311.41425 * 8 7 5 29 29 H 1.09002 * 109.53411 * 191.17079 * 8 7 5 30 30 H 1.08993 * 109.35095 * 151.10100 * 9 8 7 31 31 H 1.09000 * 109.34964 * 31.53280 * 9 8 7 32 32 H 1.09003 * 109.07006 * 302.13961 * 10 9 8 33 33 H 1.08999 * 109.01614 * 183.15425 * 10 9 8 34 34 H 0.97007 * 119.99942 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3087 2.0913 0.4818 5 6 3.3450 1.5150 0.7517 6 8 3.4965 2.3279 1.6390 7 7 4.3380 0.6719 0.4274 8 6 4.1778 -0.2691 -0.6866 9 6 4.2069 0.5072 -2.0051 10 6 2.8013 0.9664 -2.3759 11 7 2.2584 1.8871 -1.3805 12 6 1.9615 3.1542 -1.7312 13 8 2.2428 3.5593 -2.8436 14 6 1.3061 4.0445 -0.7719 15 1 0.7194 3.6310 0.0351 16 6 1.4397 5.4327 -0.9006 17 7 0.7337 6.2300 -0.1435 18 14 2.6273 6.1444 -2.1546 19 1 1.9050 6.4116 -3.4243 20 1 3.1969 7.4127 -1.6328 21 1 3.7241 5.1748 -2.4037 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 5.1660 0.6848 0.9325 28 1 3.2245 -0.7888 -0.5906 29 1 4.9922 -0.9934 -0.6719 30 1 4.5969 -0.1356 -2.7942 31 1 4.8546 1.3773 -1.8977 32 1 2.1497 0.0956 -2.4485 33 1 2.8350 1.4673 -3.3434 34 1 0.8260 7.1915 -0.2329 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886527396.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:10 Heat of formation + Delta-G solvation = -62.987398 kcal Electronic energy + Delta-G solvation = -18601.451800 eV Core-core repulsion = 15727.666108 eV Total energy + Delta-G solvation = -2873.785691 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37966 -37.79635 -36.20627 -34.38080 -32.91015 -32.44974 -30.85944 -27.08735 -26.70378 -24.94746 -22.95213 -20.76633 -20.04809 -19.02657 -17.53687 -16.87269 -15.91858 -15.72243 -15.14041 -14.56398 -14.34387 -13.78288 -13.53748 -13.34914 -13.13418 -12.64209 -12.41016 -12.23120 -12.02764 -11.90027 -11.47514 -11.26154 -11.00839 -10.83299 -10.65585 -10.49657 -10.04340 -9.59891 -9.38525 -8.97484 -8.74290 -8.02214 -7.63998 -6.56849 -4.76061 2.97145 3.44192 3.47981 3.63034 3.71409 4.12914 4.19824 4.50989 4.81554 4.93958 5.02615 5.13758 5.24642 5.42838 5.50014 5.55648 5.68293 5.73386 5.87320 5.96959 5.98114 6.15363 6.23104 6.33992 6.47786 6.52636 7.02554 7.14881 7.51496 7.64297 7.87953 8.31318 8.63510 8.72262 9.09214 9.96641 10.45169 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025184 B = 0.010239 C = 0.009712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.552151 B = 2733.981359 C = 2882.261214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.137 3.863 4 H 0.133 0.867 5 C 0.513 3.487 6 O -0.533 6.533 7 N -0.732 5.732 8 C 0.086 3.914 9 C -0.159 4.159 10 C 0.109 3.891 11 N -0.618 5.618 12 C 0.555 3.445 13 O -0.609 6.609 14 C -0.528 4.528 15 H 0.092 0.908 16 C 0.106 3.894 17 N -0.826 5.826 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.314 1.314 21 H -0.260 1.260 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.392 0.608 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -15.170 -0.547 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.029 3.971 4 H 0.150 0.850 5 C 0.298 3.702 6 O -0.407 6.407 7 N -0.386 5.386 8 C -0.038 4.038 9 C -0.199 4.199 10 C -0.015 4.015 11 N -0.353 5.353 12 C 0.364 3.636 13 O -0.499 6.499 14 C -0.564 4.564 15 H 0.109 0.891 16 C -0.112 4.112 17 N -0.456 5.456 18 Si 0.780 3.220 19 H -0.203 1.203 20 H -0.244 1.244 21 H -0.185 1.185 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.227 0.773 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.984 -14.360 -0.663 14.917 hybrid contribution 0.959 0.291 -0.240 1.030 sum 4.943 -14.069 -0.903 14.940 Atomic orbital electron populations 1.21782 0.94672 1.01205 1.03002 1.22287 0.97399 0.95916 1.02646 1.21388 0.94045 0.97000 0.84652 0.84961 1.21435 0.86719 0.79183 0.82912 1.90735 1.82217 1.35574 1.32132 1.46045 1.18293 1.39213 1.35002 1.22223 1.03956 0.91595 0.86021 1.22371 0.99370 1.00966 0.97211 1.21009 0.92283 0.93502 0.94703 1.47547 1.67776 1.12811 1.07216 1.18423 0.77795 0.79681 0.87687 1.90306 1.62212 1.73052 1.24324 1.20703 1.31662 0.90470 1.13571 0.89052 1.25644 0.94261 0.96606 0.94677 1.69544 1.35108 1.05164 1.35792 0.85528 0.81726 0.75295 0.79406 1.20278 1.24410 1.18467 0.91896 0.92908 0.92271 0.89408 0.91272 0.77349 0.88580 0.90423 0.90455 0.91007 0.92716 0.89019 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.73 37.16 0.36 -1.57 16 2 C -0.14 -1.94 3.93 -26.73 -0.10 -2.05 16 3 C 0.14 2.58 2.33 -68.96 -0.16 2.42 16 4 H 0.13 2.87 5.27 -51.93 -0.27 2.60 16 5 C 0.51 9.97 6.83 -11.19 -0.08 9.89 16 6 O -0.53 -12.76 17.94 5.56 0.10 -12.66 16 7 N -0.73 -10.66 5.29 -60.24 -0.32 -10.98 16 8 C 0.09 0.96 6.34 -3.91 -0.02 0.93 16 9 C -0.16 -2.13 5.92 -27.00 -0.16 -2.29 16 10 C 0.11 1.80 5.56 -4.56 -0.03 1.78 16 11 N -0.62 -12.94 2.60 -169.60 -0.44 -13.38 16 12 C 0.55 14.77 7.05 -12.99 -0.09 14.68 16 13 O -0.61 -17.48 12.08 5.21 0.06 -17.42 16 14 C -0.53 -15.25 9.15 -35.63 -0.33 -15.57 16 15 H 0.09 2.65 6.27 -52.48 -0.33 2.32 16 16 C 0.11 3.12 5.52 -17.37 -0.10 3.02 16 17 N -0.83 -24.26 13.92 55.55 0.77 -23.49 16 18 Si 0.95 25.70 26.18 -169.99 -4.45 21.25 16 19 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.31 -8.10 7.11 56.52 0.40 -7.70 16 21 H -0.26 -7.39 6.46 56.52 0.36 -7.03 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 25 H 0.09 1.03 3.45 -51.93 -0.18 0.85 16 26 H 0.07 0.82 7.68 -51.93 -0.40 0.43 16 27 H 0.39 5.08 8.93 -40.82 -0.36 4.72 16 28 H 0.10 0.98 3.65 -51.93 -0.19 0.79 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 32 H 0.05 0.74 6.35 -51.93 -0.33 0.41 16 33 H 0.09 1.73 6.87 -51.93 -0.36 1.37 16 34 H 0.28 7.59 8.29 -40.82 -0.34 7.25 16 LS Contribution 266.51 15.07 4.02 4.02 Total: -1.00 -35.11 266.51 -5.08 -40.19 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.12 Total: 1.22 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -0.70 Total: 11.24 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.01 Total: -47.85 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: 0.16 Total: -30.07 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -4.45 Total: 21.25 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -35.11 -5.08 -40.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886527396.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.800 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds