Wall clock time and date at job start Thu Apr 9 2020 12:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47530 * 2 1 4 4 C 1.50704 * 109.47298 * 239.99721 * 2 1 3 5 5 H 1.07998 * 119.99860 * 239.99841 * 4 2 1 6 6 C 1.37874 * 119.99667 * 60.00413 * 4 2 1 7 7 N 1.31510 * 120.00164 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47230 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47344 * 120.00023 * 8 6 4 11 11 H 1.48498 * 109.47205 * 240.00055 * 8 6 4 12 12 N 1.46505 * 109.46742 * 120.00097 * 2 1 3 13 13 C 1.46500 * 120.00227 * 59.99935 * 12 2 1 14 14 C 1.34781 * 119.99829 * 239.99850 * 12 2 1 15 15 O 1.21277 * 119.99928 * 359.97438 * 14 12 2 16 16 C 1.50694 * 119.99704 * 179.97438 * 14 12 2 17 17 H 1.09005 * 115.56680 * 309.19634 * 16 14 12 18 18 C 1.53008 * 117.49634 * 163.51032 * 16 14 12 19 19 C 1.52995 * 59.99867 * 252.50652 * 18 16 14 20 20 H 1.08994 * 117.50078 * 252.50385 * 19 18 16 21 21 C 1.50704 * 117.49421 * 107.49012 * 19 18 16 22 22 N 1.34780 * 120.00162 * 63.17305 * 21 19 18 23 23 O 1.21287 * 120.00026 * 243.17165 * 21 19 18 24 24 H 1.08999 * 109.47507 * 300.00112 * 1 2 3 25 25 H 1.09005 * 109.46848 * 60.00195 * 1 2 3 26 26 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 27 27 H 0.97007 * 120.00009 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47345 * 270.00163 * 13 12 2 29 29 H 1.09000 * 109.46857 * 29.99892 * 13 12 2 30 30 H 1.08998 * 109.46999 * 149.99876 * 13 12 2 31 31 H 1.09007 * 117.49622 * 145.01798 * 18 16 14 32 32 H 1.09001 * 117.51860 * 359.97438 * 18 16 14 33 33 H 0.96993 * 119.99973 * 359.97438 * 22 21 19 34 34 H 0.96995 * 119.99876 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1475 -2.2865 -3.6037 10 1 1.1680 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0182 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0357 2.0834 15 8 3.0865 1.1253 1.8913 16 6 3.2948 -0.7459 3.3141 17 1 2.5361 -1.2652 3.8998 18 6 4.4584 -0.1059 4.0742 19 6 4.6887 -1.3734 3.2489 20 1 4.8471 -2.3054 3.7914 21 6 5.4548 -1.2339 1.9586 22 7 6.7389 -0.8248 1.9781 23 8 4.9159 -1.4897 0.9026 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7089 1.1612 -3.4844 28 1 0.7374 -2.1444 1.9993 29 1 1.5294 -2.5969 0.4709 30 1 2.4627 -2.5819 1.9864 31 1 4.4651 -0.2040 5.1598 32 1 4.8614 0.8287 3.6840 33 1 7.1698 -0.6198 2.8226 34 1 7.2318 -0.7346 1.1476 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900568007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:30 Heat of formation + Delta-G solvation = -44.402586 kcal Electronic energy + Delta-G solvation = -18059.890883 eV Core-core repulsion = 15186.911089 eV Total energy + Delta-G solvation = -2872.979793 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04994 -38.32454 -35.93075 -34.91283 -33.29398 -32.58786 -29.31954 -25.93838 -25.11266 -24.81005 -23.68145 -20.67871 -19.94368 -18.30435 -17.17992 -16.69061 -16.16024 -15.80958 -15.45586 -14.99017 -14.22875 -13.90417 -13.48507 -13.32183 -12.64345 -12.32639 -12.12364 -11.88821 -11.53439 -11.27422 -10.93891 -10.72839 -10.69063 -10.55712 -10.33177 -10.10924 -9.98901 -9.62484 -9.42319 -9.00500 -8.81365 -8.27274 -7.37179 -5.91106 -3.95493 2.89630 3.15451 3.36488 3.43620 3.50196 3.65526 3.85857 4.16605 4.54017 4.83416 4.91855 4.94001 5.26353 5.40128 5.45363 5.68346 5.79297 6.01442 6.10038 6.20621 6.59708 6.86963 6.95270 6.98832 7.20043 7.51551 7.58688 7.69943 7.90214 8.19055 8.38748 8.55064 8.72751 9.04211 9.24254 9.69346 11.14778 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.008692 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.775896 B = 3220.627219 C = 3771.012526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.060 0.940 4 C -0.508 4.508 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.572 5.572 13 C 0.091 3.909 14 C 0.535 3.465 15 O -0.558 6.558 16 C -0.153 4.153 17 H 0.128 0.872 18 C -0.138 4.138 19 C -0.169 4.169 20 H 0.135 0.865 21 C 0.532 3.468 22 N -0.856 5.856 23 O -0.498 6.498 24 H 0.009 0.991 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.397 0.603 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 -5.906 13.691 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.077 0.923 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.301 5.301 13 C -0.053 4.053 14 C 0.321 3.679 15 O -0.439 6.439 16 C -0.175 4.175 17 H 0.146 0.854 18 C -0.175 4.175 19 C -0.190 4.190 20 H 0.153 0.847 21 C 0.315 3.685 22 N -0.420 5.420 23 O -0.370 6.370 24 H 0.028 0.972 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.225 0.775 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.937 -5.424 12.788 15.527 hybrid contribution 0.712 -0.519 -0.717 1.136 sum 7.650 -5.942 12.072 15.478 Atomic orbital electron populations 1.22091 0.98353 0.99336 1.00676 1.18905 0.90546 0.94390 0.80253 0.92265 1.21429 1.30448 1.12808 0.89986 0.91698 1.24890 0.95243 0.95131 0.98896 1.69902 1.37211 1.23017 1.23277 0.86455 0.78472 0.79719 0.82862 1.19765 1.21158 1.21146 1.47937 1.48057 1.11315 1.22793 1.21500 0.98082 0.83515 1.02194 1.19213 0.79187 0.86384 0.83134 1.90624 1.59011 1.17265 1.76955 1.22373 0.91830 1.03460 0.99791 0.85429 1.23045 1.00110 0.96126 0.98251 1.22217 0.98771 1.00085 0.97949 0.84700 1.19670 0.81985 0.76887 0.89973 1.43743 1.13663 1.72197 1.12439 1.90963 1.67595 1.46987 1.31410 0.97163 0.88853 0.95193 0.93049 0.94464 0.90331 0.92776 0.87405 0.87223 0.77546 0.76853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 8.97 37.16 0.33 -3.38 16 2 C 0.26 7.15 2.64 -69.08 -0.18 6.96 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.51 -14.87 7.99 -34.44 -0.28 -15.15 16 5 H 0.06 1.95 7.33 -52.49 -0.38 1.56 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -26.75 11.32 55.43 0.63 -26.12 16 8 Si 0.90 22.64 29.54 -169.99 -5.02 17.62 16 9 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 N -0.57 -13.35 2.67 -175.27 -0.47 -13.82 16 13 C 0.09 1.73 9.19 59.85 0.55 2.28 16 14 C 0.53 11.90 5.59 -10.99 -0.06 11.84 16 15 O -0.56 -14.63 15.72 5.56 0.09 -14.54 16 16 C -0.15 -2.35 4.37 -91.77 -0.40 -2.75 16 17 H 0.13 1.59 8.03 -51.93 -0.42 1.17 16 18 C -0.14 -1.65 9.74 -26.73 -0.26 -1.91 16 19 C -0.17 -2.16 6.06 -91.77 -0.56 -2.72 16 20 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 21 C 0.53 8.66 7.15 -10.98 -0.08 8.58 16 22 N -0.86 -9.97 8.87 31.22 0.28 -9.69 16 23 O -0.50 -11.07 16.61 5.55 0.09 -10.97 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 2.58 6.07 -51.93 -0.32 2.27 16 26 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.61 7.02 -51.93 -0.36 1.25 16 30 H 0.05 0.89 6.81 -51.93 -0.35 0.54 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.11 1.53 7.77 -51.93 -0.40 1.13 16 33 H 0.40 3.08 8.83 -40.82 -0.36 2.72 16 34 H 0.40 4.54 8.93 -40.82 -0.36 4.18 16 LS Contribution 289.30 15.07 4.36 4.36 Total: -1.00 -37.12 289.30 -5.62 -42.74 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.55 Total: 5.05 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.03 Total: 5.38 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.44 Total: -49.63 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: 0.18 Total: -25.52 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -37.12 -5.62 -42.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.662 kcal (2) G-P(sol) polarization free energy of solvation -37.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds