Wall clock time and date at job start Thu Apr 9 2020 12:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47530 * 2 1 4 4 C 1.50704 * 109.47298 * 239.99721 * 2 1 3 5 5 H 1.07998 * 119.99860 * 239.99841 * 4 2 1 6 6 C 1.37874 * 119.99667 * 60.00413 * 4 2 1 7 7 N 1.31510 * 120.00164 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47230 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47344 * 120.00023 * 8 6 4 11 11 H 1.48498 * 109.47205 * 240.00055 * 8 6 4 12 12 N 1.46505 * 109.46742 * 120.00097 * 2 1 3 13 13 C 1.46500 * 120.00227 * 59.99935 * 12 2 1 14 14 C 1.34781 * 119.99829 * 239.99850 * 12 2 1 15 15 O 1.21277 * 119.99928 * 359.97438 * 14 12 2 16 16 C 1.50694 * 119.99704 * 179.97438 * 14 12 2 17 17 H 1.09005 * 115.56680 * 309.19634 * 16 14 12 18 18 C 1.53008 * 117.49634 * 163.51032 * 16 14 12 19 19 C 1.52995 * 59.99867 * 252.50652 * 18 16 14 20 20 H 1.08994 * 117.50078 * 252.50385 * 19 18 16 21 21 C 1.50704 * 117.49421 * 107.49012 * 19 18 16 22 22 N 1.34780 * 120.00162 * 63.17305 * 21 19 18 23 23 O 1.21287 * 120.00026 * 243.17165 * 21 19 18 24 24 H 1.08999 * 109.47507 * 300.00112 * 1 2 3 25 25 H 1.09005 * 109.46848 * 60.00195 * 1 2 3 26 26 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 27 27 H 0.97007 * 120.00009 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47345 * 270.00163 * 13 12 2 29 29 H 1.09000 * 109.46857 * 29.99892 * 13 12 2 30 30 H 1.08998 * 109.46999 * 149.99876 * 13 12 2 31 31 H 1.09007 * 117.49622 * 145.01798 * 18 16 14 32 32 H 1.09001 * 117.51860 * 359.97438 * 18 16 14 33 33 H 0.96993 * 119.99973 * 359.97438 * 22 21 19 34 34 H 0.96995 * 119.99876 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1475 -2.2865 -3.6037 10 1 1.1680 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0182 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 6 2.7931 -0.0357 2.0834 15 8 3.0865 1.1253 1.8913 16 6 3.2948 -0.7459 3.3141 17 1 2.5361 -1.2652 3.8998 18 6 4.4584 -0.1059 4.0742 19 6 4.6887 -1.3734 3.2489 20 1 4.8471 -2.3054 3.7914 21 6 5.4548 -1.2339 1.9586 22 7 6.7389 -0.8248 1.9781 23 8 4.9159 -1.4897 0.9026 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7089 1.1612 -3.4844 28 1 0.7374 -2.1444 1.9993 29 1 1.5294 -2.5969 0.4709 30 1 2.4627 -2.5819 1.9864 31 1 4.4651 -0.2040 5.1598 32 1 4.8614 0.8287 3.6840 33 1 7.1698 -0.6198 2.8226 34 1 7.2318 -0.7346 1.1476 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:30 Heat of formation + Delta-G solvation = -74.699563 kcal Electronic energy + Delta-G solvation = -18061.204658 eV Core-core repulsion = 15186.911089 eV Total energy + Delta-G solvation = -2874.293569 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.42156 -39.87541 -37.43712 -36.59987 -34.74663 -34.41098 -31.37263 -27.54027 -27.30583 -26.14212 -24.98737 -22.31855 -21.27146 -19.79242 -18.71215 -18.26269 -17.81641 -17.39935 -16.81157 -16.72159 -16.03850 -15.56340 -14.96368 -14.67949 -14.43932 -14.02423 -13.76627 -13.52097 -13.07350 -13.03943 -12.85933 -12.73528 -12.59538 -12.20983 -12.14123 -11.64566 -11.47668 -11.16760 -10.95930 -10.62883 -10.58003 -10.44398 -9.22750 -8.14198 -6.27772 1.34428 1.36148 1.49450 1.65622 1.75911 2.29085 2.45311 2.69837 2.80797 3.12408 3.68702 3.77587 3.88333 4.14863 4.42021 4.53363 4.72482 4.77429 4.81878 4.88742 4.90305 5.04540 5.09891 5.15295 5.48920 5.62395 5.70843 5.93169 6.08603 6.20590 6.53035 6.80145 6.93764 7.35107 7.45030 7.55136 8.90439 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.008692 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.775896 B = 3220.627219 C = 3771.012526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.264 3.736 3 H 0.000 1.000 4 C -0.521 4.521 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.268 1.268 11 H -0.284 1.284 12 N -0.584 5.584 13 C 0.092 3.908 14 C 0.521 3.479 15 O -0.616 6.616 16 C -0.176 4.176 17 H 0.167 0.833 18 C -0.111 4.111 19 C -0.150 4.150 20 H 0.186 0.814 21 C 0.517 3.483 22 N -0.835 5.835 23 O -0.571 6.571 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.263 0.737 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.418 0.582 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.205 -7.880 15.956 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.162 3.838 3 H 0.018 0.982 4 C -0.560 4.560 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.193 1.193 11 H -0.210 1.210 12 N -0.312 5.312 13 C -0.051 4.051 14 C 0.310 3.690 15 O -0.500 6.500 16 C -0.197 4.197 17 H 0.185 0.815 18 C -0.149 4.149 19 C -0.171 4.171 20 H 0.203 0.797 21 C 0.301 3.699 22 N -0.400 5.400 23 O -0.449 6.449 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.180 0.820 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 7.741 -7.415 15.121 18.536 hybrid contribution 0.567 0.162 -1.393 1.512 sum 8.308 -7.253 13.729 17.610 Atomic orbital electron populations 1.21852 0.96915 1.00087 0.99986 1.18454 0.91562 0.91732 0.82081 0.98158 1.21546 1.30583 1.12564 0.91291 0.93116 1.25715 0.95374 0.95857 1.01878 1.70029 1.37825 1.24019 1.24142 0.85443 0.78305 0.78370 0.79091 1.19868 1.19282 1.20980 1.47942 1.48524 1.12910 1.21800 1.21670 1.00599 0.80942 1.01880 1.20411 0.77825 0.86053 0.84685 1.90578 1.60653 1.20019 1.78726 1.22381 0.94126 1.05612 0.97610 0.81527 1.23226 0.96413 0.94489 1.00735 1.22395 0.95609 1.02719 0.96401 0.79655 1.20477 0.82993 0.75898 0.90524 1.43623 1.12539 1.70041 1.13776 1.90941 1.69290 1.50538 1.34108 0.95902 0.91400 0.93494 0.92735 0.91314 0.92566 0.89936 0.82040 0.89860 0.75012 0.76770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 8.97 71.98 0.65 -6.13 16 2 C 0.26 15.21 2.64 44.24 0.12 15.32 16 3 H 0.00 0.03 6.90 -2.39 -0.02 0.01 16 4 C -0.52 -31.69 7.99 25.60 0.20 -31.49 16 5 H 0.05 3.17 7.33 -2.91 -0.02 3.15 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -56.77 11.32 21.45 0.24 -56.53 16 8 Si 0.96 47.44 29.54 68.60 2.03 49.47 16 9 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 12 N -0.58 -27.66 2.67 -826.80 -2.21 -29.87 16 13 C 0.09 3.37 9.19 127.77 1.17 4.54 16 14 C 0.52 23.37 5.59 87.65 0.49 23.86 16 15 O -0.62 -33.77 15.72 -3.02 -0.05 -33.82 16 16 C -0.18 -4.89 4.37 -11.54 -0.05 -4.94 16 17 H 0.17 3.29 8.03 -2.38 -0.02 3.27 16 18 C -0.11 -2.22 9.74 30.60 0.30 -1.92 16 19 C -0.15 -3.26 6.06 -11.54 -0.07 -3.33 16 20 H 0.19 2.20 8.14 -2.39 -0.02 2.18 16 21 C 0.52 16.18 7.15 87.66 0.63 16.81 16 22 N -0.84 -18.20 8.87 -173.52 -1.54 -19.74 16 23 O -0.57 -25.85 16.61 -3.05 -0.05 -25.91 16 24 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 3.88 6.07 -2.38 -0.01 3.87 16 26 H 0.05 2.22 7.67 -2.39 -0.02 2.20 16 27 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.30 7.02 -2.39 -0.02 2.28 16 30 H 0.08 2.53 6.81 -2.39 -0.02 2.51 16 31 H 0.16 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.08 2.17 7.77 -2.39 -0.02 2.15 16 33 H 0.42 5.34 8.83 -92.71 -0.82 4.52 16 34 H 0.40 8.87 8.93 -92.71 -0.83 8.05 16 Total: -1.00 -88.60 289.30 1.79 -86.81 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -0.52 Total: 15.79 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 3.88 Total: 13.79 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.50 Total: -106.14 kcal Atomic # 8 Polarization: -59.62 SS G_CDS: -0.10 Total: -59.72 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -88.60 1.79 -86.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.107 kcal (2) G-P(sol) polarization free energy of solvation -88.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds