Wall clock time and date at job start Thu Apr 9 2020 12:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47112 * 2 1 4 4 H 1.08994 * 109.46838 * 57.71122 * 3 2 1 5 5 C 1.50702 * 109.47031 * 177.70681 * 3 2 1 6 6 H 1.07998 * 120.00157 * 116.76138 * 5 3 2 7 7 C 1.37885 * 119.99873 * 296.76434 * 5 3 2 8 8 N 1.31515 * 119.99544 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99989 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46812 * 90.00028 * 9 7 5 11 11 H 1.48497 * 109.47037 * 209.99764 * 9 7 5 12 12 H 1.48503 * 109.47277 * 330.00233 * 9 7 5 13 13 N 1.46899 * 109.47244 * 297.70352 * 3 2 1 14 14 C 1.46842 * 111.00305 * 299.44341 * 13 3 2 15 15 C 1.53035 * 109.52531 * 174.15981 * 14 13 3 16 16 C 1.53130 * 109.27727 * 59.17640 * 15 14 13 17 17 C 1.53123 * 109.15858 * 302.34812 * 16 15 14 18 18 C 1.46845 * 110.99816 * 175.22820 * 13 3 2 19 19 H 1.09000 * 109.45994 * 65.82762 * 18 13 3 20 20 C 1.50704 * 109.46397 * 305.85886 * 18 13 3 21 21 N 1.34780 * 119.99514 * 152.22365 * 20 18 13 22 22 O 1.21282 * 119.99870 * 332.22444 * 20 18 13 23 23 H 1.08997 * 109.47334 * 185.07958 * 1 2 3 24 24 H 1.08999 * 109.46853 * 305.08227 * 1 2 3 25 25 H 1.09003 * 109.47135 * 65.07543 * 1 2 3 26 26 H 1.09008 * 109.46711 * 240.00156 * 2 1 3 27 27 H 1.08999 * 109.46845 * 120.00456 * 2 1 3 28 28 H 0.97004 * 119.99491 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46132 * 294.17741 * 14 13 3 30 30 H 1.08996 * 109.46257 * 54.15284 * 14 13 3 31 31 H 1.08993 * 109.50373 * 179.11463 * 15 14 13 32 32 H 1.08998 * 109.50458 * 299.20339 * 15 14 13 33 33 H 1.08998 * 109.51687 * 62.25190 * 16 15 14 34 34 H 1.08999 * 109.51831 * 182.37988 * 16 15 14 35 35 H 1.08994 * 109.49747 * 177.59702 * 17 16 15 36 36 H 1.09004 * 109.50164 * 297.67315 * 17 16 15 37 37 H 0.96991 * 120.00195 * 359.97438 * 21 20 18 38 38 H 0.97002 * 119.99545 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6435 1.9680 0.8687 5 6 3.5459 1.4429 0.0569 6 1 4.1172 1.8529 -0.7628 7 6 4.1945 0.9195 1.1554 8 7 5.5087 0.9194 1.2047 9 14 3.2064 0.2108 2.5734 10 1 2.9675 -1.2355 2.3361 11 1 3.9619 0.3864 3.8397 12 1 1.9043 0.9180 2.6717 13 7 1.5962 2.1188 -1.2262 14 6 2.1234 1.4446 -2.4194 15 6 1.5259 2.0846 -3.6745 16 6 1.8872 3.5724 -3.7043 17 6 1.3688 4.2411 -2.4281 18 6 1.9709 3.5385 -1.2092 19 1 3.0569 3.6278 -1.2382 20 6 1.4480 4.1809 0.0498 21 7 2.0835 5.2462 0.5768 22 8 0.4553 3.7392 0.5886 23 1 -0.3634 -1.0236 0.0910 24 1 -0.3633 0.5907 0.8410 25 1 -0.3633 0.4331 -0.9320 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 5.9649 0.5516 1.9777 29 1 3.2087 1.5437 -2.4427 30 1 1.8558 0.3885 -2.3879 31 1 1.9294 1.5943 -4.5603 32 1 0.4417 1.9732 -3.6589 33 1 2.9701 3.6831 -3.7596 34 1 1.4281 4.0412 -4.5747 35 1 1.6601 5.2914 -2.4236 36 1 0.2820 4.1647 -2.3929 37 1 2.8776 5.5992 0.1460 38 1 1.7467 5.6600 1.3869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251340887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:57 Heat of formation + Delta-G solvation = -66.917151 kcal Electronic energy + Delta-G solvation = -19032.932444 eV Core-core repulsion = 16294.809441 eV Total energy + Delta-G solvation = -2738.123004 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24202 -38.93780 -36.50748 -34.52648 -34.10843 -32.51560 -31.62158 -28.98471 -25.77142 -24.63872 -24.15950 -21.63055 -21.35840 -20.52370 -18.77463 -18.25587 -17.64978 -16.98122 -16.18807 -16.02664 -15.47419 -15.08495 -14.93395 -14.81446 -14.48513 -14.06402 -13.89728 -13.57526 -13.36875 -13.12576 -12.89216 -12.53335 -12.17856 -12.12326 -11.83311 -11.67036 -11.56449 -11.39693 -11.21439 -10.98699 -10.70726 -10.52348 -10.44631 -8.84224 -8.34646 -6.35460 1.22353 1.29167 1.40726 1.78088 2.26929 2.66616 3.01780 3.31297 3.96777 4.02357 4.15611 4.34054 4.38183 4.42124 4.46825 4.52234 4.64578 4.76309 4.90086 4.99659 5.05961 5.08729 5.11479 5.18299 5.25894 5.29962 5.36011 5.47311 5.48020 5.57740 5.64221 6.00111 6.15651 6.35186 6.44865 6.65093 6.72447 7.32940 7.49167 8.80600 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.011066 C = 0.010120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.313835 B = 2529.553376 C = 2766.089970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.178 3.822 4 H 0.030 0.970 5 C -0.530 4.530 6 H 0.048 0.952 7 C 0.030 3.970 8 N -0.938 5.938 9 Si 0.927 3.073 10 H -0.266 1.266 11 H -0.296 1.296 12 H -0.265 1.265 13 N -0.503 5.503 14 C 0.058 3.942 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.098 4.098 18 C 0.072 3.928 19 H 0.051 0.949 20 C 0.525 3.475 21 N -0.841 5.841 22 O -0.574 6.574 23 H 0.056 0.944 24 H 0.030 0.970 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.264 0.736 29 H 0.016 0.984 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.413 0.587 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 6.806 -8.047 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C 0.070 3.930 4 H 0.048 0.952 5 C -0.569 4.569 6 H 0.066 0.934 7 C -0.169 4.169 8 N -0.578 5.578 9 Si 0.756 3.244 10 H -0.191 1.191 11 H -0.224 1.224 12 H -0.190 1.190 13 N -0.228 5.228 14 C -0.070 4.070 15 C -0.149 4.149 16 C -0.150 4.150 17 C -0.136 4.136 18 C -0.040 4.040 19 H 0.068 0.932 20 C 0.310 3.690 21 N -0.405 5.405 22 O -0.453 6.453 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.243 0.757 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.299 6.324 -7.767 13.007 hybrid contribution 1.456 -0.197 1.468 2.077 sum -6.843 6.127 -6.298 11.137 Atomic orbital electron populations 1.21559 0.94837 1.00263 1.01831 1.21848 0.96342 0.97824 0.99888 1.19699 0.91314 0.91854 0.90165 0.95220 1.21856 0.92182 1.39110 1.03796 0.93355 1.25536 0.95232 0.95923 1.00214 1.70019 1.08705 1.47872 1.31235 0.86152 0.79245 0.79807 0.79237 1.19146 1.22387 1.19007 1.62152 1.58111 0.99978 1.02519 1.22069 0.96440 0.98469 0.90062 1.21620 1.01354 0.95933 0.96015 1.21544 1.00873 0.95359 0.97181 1.21544 1.00857 0.99079 0.92121 1.21515 0.98196 0.90780 0.93519 0.93150 1.20771 0.82666 0.79561 0.85975 1.43688 1.32604 1.33044 1.31192 1.90649 1.27965 1.63321 1.63330 0.92459 0.95058 0.91470 0.91871 0.95178 0.92709 0.96579 0.91283 0.90126 0.91134 0.92364 0.88989 0.89348 0.91433 0.75698 0.76439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.71 71.98 0.70 -4.25 16 2 C -0.12 -5.45 4.72 30.59 0.14 -5.30 16 3 C 0.18 8.61 0.96 44.17 0.04 8.66 16 4 H 0.03 1.62 4.63 -2.39 -0.01 1.61 16 5 C -0.53 -29.22 7.73 25.60 0.20 -29.02 16 6 H 0.05 2.88 6.09 -2.91 -0.02 2.86 16 7 C 0.03 1.72 5.45 84.66 0.46 2.18 16 8 N -0.94 -57.31 13.96 21.45 0.30 -57.01 16 9 Si 0.93 46.94 24.55 68.60 1.68 48.63 16 10 H -0.27 -12.85 6.85 99.48 0.68 -12.17 16 11 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 12 H -0.27 -13.57 6.45 99.48 0.64 -12.93 16 13 N -0.50 -20.55 3.67 -854.80 -3.14 -23.69 16 14 C 0.06 2.10 4.80 86.33 0.41 2.52 16 15 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 16 C -0.11 -2.65 6.00 30.68 0.18 -2.46 16 17 C -0.10 -2.64 5.36 30.65 0.16 -2.47 16 18 C 0.07 2.64 1.89 44.19 0.08 2.72 16 19 H 0.05 2.01 7.02 -2.39 -0.02 1.99 16 20 C 0.53 20.07 6.19 87.66 0.54 20.61 16 21 N -0.84 -24.07 8.87 -173.52 -1.54 -25.61 16 22 O -0.57 -26.49 15.96 -3.03 -0.05 -26.54 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 2.48 7.82 -2.39 -0.02 2.46 16 26 H 0.06 2.72 6.18 -2.38 -0.01 2.71 16 27 H 0.03 1.43 3.68 -2.39 -0.01 1.42 16 28 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.02 0.67 6.58 -2.39 -0.02 0.65 16 30 H 0.07 2.55 5.98 -2.39 -0.01 2.54 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 37 H 0.41 9.42 8.83 -92.72 -0.82 8.60 16 38 H 0.40 10.20 8.93 -92.71 -0.83 9.37 16 Total: -1.00 -70.47 285.50 -0.28 -70.75 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.66 Total: 23.08 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 3.12 Total: -9.60 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -4.38 Total: -106.31 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.68 Total: 48.63 kcal Total: -70.47 -0.28 -70.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251340887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.833 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds