Wall clock time and date at job start Thu Apr 9 2020 12:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 113.01807 * 2 1 4 4 C 1.53947 * 113.73874 * 131.65982 * 2 1 3 5 5 N 1.47584 * 86.11565 * 137.95347 * 4 2 1 6 6 C 1.34776 * 134.49098 * 155.35611 * 5 4 2 7 7 O 1.21583 * 120.00007 * 179.97438 * 6 5 4 8 8 N 1.34773 * 120.00119 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00319 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47384 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99817 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99796 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00298 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99942 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47124 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47101 * 119.99986 * 14 12 10 17 17 H 1.48497 * 109.47241 * 239.99871 * 14 12 10 18 18 C 1.47576 * 91.01498 * 335.35788 * 5 4 2 19 19 C 1.52998 * 113.77022 * 270.33901 * 18 5 4 20 20 C 1.52997 * 113.77006 * 138.94110 * 18 5 4 21 21 H 1.08995 * 109.47081 * 307.84557 * 1 2 3 22 22 H 1.08998 * 109.46965 * 67.84769 * 1 2 3 23 23 H 1.08999 * 109.46944 * 187.84562 * 1 2 3 24 24 H 1.09004 * 109.47365 * 172.15626 * 3 2 1 25 25 H 1.09001 * 109.47221 * 292.15486 * 3 2 1 26 26 H 1.08998 * 109.47391 * 52.15175 * 3 2 1 27 27 H 1.09001 * 113.76955 * 252.25382 * 4 2 1 28 28 H 1.08997 * 113.77064 * 23.65458 * 4 2 1 29 29 H 0.96998 * 120.00051 * 359.97438 * 8 6 5 30 30 H 1.08999 * 109.46972 * 299.99913 * 9 8 6 31 31 H 1.09006 * 109.47256 * 59.99504 * 9 8 6 32 32 H 0.96998 * 120.00219 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.46963 * 156.49603 * 19 18 5 34 34 H 1.08993 * 109.47086 * 276.49791 * 19 18 5 35 35 H 1.08996 * 109.47051 * 36.49703 * 19 18 5 36 36 H 1.09007 * 109.47038 * 323.50558 * 20 18 5 37 37 H 1.09004 * 109.47067 * 83.50563 * 20 18 5 38 38 H 1.08996 * 109.47465 * 203.50636 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1283 1.4081 0.0000 4 6 2.1498 -0.9367 1.0528 5 7 3.1104 -1.3200 0.0001 6 6 4.3622 -1.8195 0.0002 7 8 4.9268 -2.0452 -1.0527 8 7 4.9879 -2.0696 1.1674 9 6 6.3484 -2.6129 1.1675 10 6 6.8150 -2.7989 2.5884 11 1 6.1634 -2.5379 3.4092 12 6 8.0741 -3.3011 2.8403 13 7 8.8677 -3.6184 1.8408 14 14 8.6528 -3.5309 4.6015 15 1 7.5804 -3.1018 5.5349 16 1 8.9697 -4.9627 4.8356 17 1 9.8684 -2.7104 4.8342 18 6 2.1499 -0.9368 -1.0527 19 6 1.2241 -2.0750 -1.4867 20 6 2.7888 -0.2016 -2.2325 21 1 -0.3633 0.6305 0.8115 22 1 -0.3633 0.3875 -0.9518 23 1 -0.3633 -1.0180 0.1403 24 1 3.2074 1.3445 0.1402 25 1 1.9137 1.8941 -0.9518 26 1 1.6900 1.9891 0.8115 27 1 2.6049 -0.4129 1.8934 28 1 1.4902 -1.7475 1.3621 29 1 4.5374 -1.8898 2.0074 30 1 6.3558 -3.5741 0.6536 31 1 7.0161 -1.9212 0.6538 32 1 9.7536 -3.9713 2.0181 33 1 0.3145 -1.6585 -1.9195 34 1 1.7302 -2.6919 -2.2292 35 1 0.9680 -2.6854 -0.6208 36 1 3.5849 0.4476 -1.8679 37 1 3.2036 -0.9279 -2.9316 38 1 2.0332 0.3992 -2.7386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321080098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:19 Heat of formation + Delta-G solvation = -10.986704 kcal Electronic energy + Delta-G solvation = -17926.559841 eV Core-core repulsion = 15190.862164 eV Total energy + Delta-G solvation = -2735.697677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.87477 -37.89357 -34.03600 -32.51653 -31.94784 -31.23838 -28.77687 -27.44400 -26.15901 -25.52910 -22.96906 -21.89873 -19.56574 -17.91894 -16.77488 -16.02913 -15.78631 -15.42918 -14.90933 -14.69299 -13.98645 -13.71745 -13.49655 -13.03728 -12.59604 -12.44265 -12.33681 -12.02045 -11.93159 -11.79526 -11.72639 -11.61013 -11.53751 -11.04583 -10.89545 -10.86674 -10.79983 -10.26028 -10.01327 -9.31149 -9.14363 -8.68860 -8.31354 -7.63999 -6.12060 -4.18249 3.04933 3.25939 3.32934 3.36436 4.01836 4.16153 4.34047 4.66362 4.83614 5.00909 5.06200 5.12796 5.23981 5.30310 5.44400 5.51517 5.61264 5.65201 5.68031 5.78800 5.82033 5.85725 5.97169 5.99451 6.01938 6.20068 6.29053 6.39717 6.55404 7.33487 7.59545 7.62310 7.71232 8.00654 8.17166 8.82604 9.01584 9.41181 9.57362 10.98334 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039440 B = 0.005335 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.765995 B = 5246.623390 C = 5549.383404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 C -0.124 4.124 4 C 0.107 3.893 5 N -0.659 5.659 6 C 0.717 3.283 7 O -0.597 6.597 8 N -0.729 5.729 9 C 0.268 3.732 10 C -0.539 4.539 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.184 3.816 19 C -0.147 4.147 20 C -0.141 4.141 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.384 0.616 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.111 8.160 -2.489 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 C -0.181 4.181 4 C -0.017 4.017 5 N -0.401 5.401 6 C 0.420 3.580 7 O -0.476 6.476 8 N -0.380 5.380 9 C 0.147 3.853 10 C -0.578 4.578 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.098 3.902 19 C -0.206 4.206 20 C -0.199 4.199 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.216 0.784 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.195 7.800 -3.299 19.167 hybrid contribution 0.297 -0.260 1.418 1.472 sum -16.898 7.540 -1.881 18.599 Atomic orbital electron populations 1.21736 0.93490 1.02140 1.01971 1.22480 0.95242 0.95433 0.96210 1.21540 1.01277 0.93601 1.01732 1.23168 0.89906 0.95845 0.92776 1.49366 1.12099 1.69795 1.08816 1.15703 0.79325 0.77763 0.85212 1.90855 1.65771 1.59875 1.31084 1.45683 1.19102 1.67986 1.05247 1.18964 0.75362 0.93936 0.97075 1.21263 1.00451 1.44466 0.91598 0.92001 1.24945 0.96313 0.95060 0.97723 1.69992 1.08804 1.42753 1.30801 0.86363 0.78700 0.77873 0.83964 1.19688 1.20814 1.20815 1.21861 0.86320 0.92150 0.89858 1.21968 0.98848 0.97874 1.01886 1.21835 1.00366 1.00444 0.97245 0.92274 0.92204 0.92034 0.91918 0.92087 0.92356 0.90540 0.90548 0.78378 0.95864 0.95863 0.92555 0.91221 0.91880 0.92099 0.91747 0.91744 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.06 37.16 0.30 -0.75 16 2 C -0.09 -0.98 1.31 -153.58 -0.20 -1.18 16 3 C -0.12 -1.27 7.90 37.15 0.29 -0.98 16 4 C 0.11 1.32 7.19 -2.97 -0.02 1.30 16 5 N -0.66 -11.05 3.15 -168.89 -0.53 -11.59 16 6 C 0.72 16.08 8.66 -86.92 -0.75 15.33 16 7 O -0.60 -15.82 16.52 5.29 0.09 -15.73 16 8 N -0.73 -16.81 5.55 -66.41 -0.37 -17.18 16 9 C 0.27 7.49 5.43 -5.19 -0.03 7.46 16 10 C -0.54 -15.15 9.28 -34.44 -0.32 -15.47 16 11 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 14 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.18 2.45 1.49 -130.76 -0.19 2.26 16 19 C -0.15 -1.72 8.07 37.16 0.30 -1.42 16 20 C -0.14 -1.93 7.63 37.16 0.28 -1.65 16 21 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.46 7.01 -51.93 -0.36 0.09 16 24 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 25 H 0.06 0.56 7.57 -51.93 -0.39 0.17 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 28 H 0.08 0.84 7.64 -51.93 -0.40 0.44 16 29 H 0.38 7.81 7.93 -40.82 -0.32 7.49 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 0.62 7.41 -51.93 -0.38 0.23 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.70 7.35 -51.93 -0.38 0.32 16 36 H 0.06 0.99 7.26 -51.92 -0.38 0.61 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -33.49 308.77 -7.24 -40.72 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.35 Total: 2.26 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.44 Total: 6.60 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.16 Total: -54.76 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.09 Total: -15.73 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.49 -7.24 -40.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321080098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.736 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds