Wall clock time and date at job start Thu Apr 9 2020 12:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 113.01807 * 2 1 4 4 C 1.53947 * 113.73874 * 131.65982 * 2 1 3 5 5 N 1.47584 * 86.11565 * 137.95347 * 4 2 1 6 6 C 1.34776 * 134.49098 * 155.35611 * 5 4 2 7 7 O 1.21583 * 120.00007 * 179.97438 * 6 5 4 8 8 N 1.34773 * 120.00119 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00319 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47384 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99817 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99796 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00298 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99942 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47124 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47101 * 119.99986 * 14 12 10 17 17 H 1.48497 * 109.47241 * 239.99871 * 14 12 10 18 18 C 1.47576 * 91.01498 * 335.35788 * 5 4 2 19 19 C 1.52998 * 113.77022 * 270.33901 * 18 5 4 20 20 C 1.52997 * 113.77006 * 138.94110 * 18 5 4 21 21 H 1.08995 * 109.47081 * 307.84557 * 1 2 3 22 22 H 1.08998 * 109.46965 * 67.84769 * 1 2 3 23 23 H 1.08999 * 109.46944 * 187.84562 * 1 2 3 24 24 H 1.09004 * 109.47365 * 172.15626 * 3 2 1 25 25 H 1.09001 * 109.47221 * 292.15486 * 3 2 1 26 26 H 1.08998 * 109.47391 * 52.15175 * 3 2 1 27 27 H 1.09001 * 113.76955 * 252.25382 * 4 2 1 28 28 H 1.08997 * 113.77064 * 23.65458 * 4 2 1 29 29 H 0.96998 * 120.00051 * 359.97438 * 8 6 5 30 30 H 1.08999 * 109.46972 * 299.99913 * 9 8 6 31 31 H 1.09006 * 109.47256 * 59.99504 * 9 8 6 32 32 H 0.96998 * 120.00219 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.46963 * 156.49603 * 19 18 5 34 34 H 1.08993 * 109.47086 * 276.49791 * 19 18 5 35 35 H 1.08996 * 109.47051 * 36.49703 * 19 18 5 36 36 H 1.09007 * 109.47038 * 323.50558 * 20 18 5 37 37 H 1.09004 * 109.47067 * 83.50563 * 20 18 5 38 38 H 1.08996 * 109.47465 * 203.50636 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1283 1.4081 0.0000 4 6 2.1498 -0.9367 1.0528 5 7 3.1104 -1.3200 0.0001 6 6 4.3622 -1.8195 0.0002 7 8 4.9268 -2.0452 -1.0527 8 7 4.9879 -2.0696 1.1674 9 6 6.3484 -2.6129 1.1675 10 6 6.8150 -2.7989 2.5884 11 1 6.1634 -2.5379 3.4092 12 6 8.0741 -3.3011 2.8403 13 7 8.8677 -3.6184 1.8408 14 14 8.6528 -3.5309 4.6015 15 1 7.5804 -3.1018 5.5349 16 1 8.9697 -4.9627 4.8356 17 1 9.8684 -2.7104 4.8342 18 6 2.1499 -0.9368 -1.0527 19 6 1.2241 -2.0750 -1.4867 20 6 2.7888 -0.2016 -2.2325 21 1 -0.3633 0.6305 0.8115 22 1 -0.3633 0.3875 -0.9518 23 1 -0.3633 -1.0180 0.1403 24 1 3.2074 1.3445 0.1402 25 1 1.9137 1.8941 -0.9518 26 1 1.6900 1.9891 0.8115 27 1 2.6049 -0.4129 1.8934 28 1 1.4902 -1.7475 1.3621 29 1 4.5374 -1.8898 2.0074 30 1 6.3558 -3.5741 0.6536 31 1 7.0161 -1.9212 0.6538 32 1 9.7536 -3.9713 2.0181 33 1 0.3145 -1.6585 -1.9195 34 1 1.7302 -2.6919 -2.2292 35 1 0.9680 -2.6854 -0.6208 36 1 3.5849 0.4476 -1.8679 37 1 3.2036 -0.9279 -2.9316 38 1 2.0332 0.3992 -2.7386 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321080098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:19 Heat of formation + Delta-G solvation = -34.527861 kcal Electronic energy + Delta-G solvation = -17927.580662 eV Core-core repulsion = 15190.862164 eV Total energy + Delta-G solvation = -2736.718499 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.06304 -39.61847 -36.10811 -34.45131 -33.20365 -32.39313 -29.71332 -29.34593 -27.20300 -26.77103 -24.68573 -23.37390 -21.26660 -19.42237 -18.15703 -17.79560 -17.31349 -16.72289 -16.55710 -16.04920 -15.49448 -15.23419 -14.77123 -14.52117 -14.05527 -13.94737 -13.41023 -13.35430 -13.22781 -12.95062 -12.80181 -12.74949 -12.71815 -12.59476 -12.45702 -12.25674 -12.12760 -11.75022 -11.47247 -11.00499 -10.83551 -10.83191 -10.03913 -9.36424 -8.30714 -6.47994 1.41081 1.43665 1.56198 1.64964 2.27317 2.36697 3.03908 3.11674 3.30781 3.86724 3.93531 4.01563 4.26003 4.32760 4.41638 4.62534 4.70495 4.81075 4.83918 4.87985 4.90184 4.99104 5.08203 5.11105 5.16654 5.18931 5.22459 5.30611 5.31895 5.43412 5.49102 5.61539 5.73132 5.83584 6.48772 6.65384 7.22390 7.24749 7.76627 8.82200 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039440 B = 0.005335 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.765995 B = 5246.623390 C = 5549.383404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 C -0.125 4.125 4 C 0.099 3.901 5 N -0.662 5.662 6 C 0.709 3.291 7 O -0.650 6.650 8 N -0.725 5.725 9 C 0.288 3.712 10 C -0.554 4.554 11 H 0.081 0.919 12 C 0.003 3.997 13 N -0.932 5.932 14 Si 0.990 3.010 15 H -0.253 1.253 16 H -0.277 1.277 17 H -0.277 1.277 18 C 0.167 3.833 19 C -0.143 4.143 20 C -0.138 4.138 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.399 0.601 30 H -0.018 1.018 31 H -0.019 1.019 32 H 0.269 0.731 33 H 0.107 0.893 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.087 9.234 -0.387 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.071 4.071 3 C -0.182 4.182 4 C -0.022 4.022 5 N -0.402 5.402 6 C 0.412 3.588 7 O -0.534 6.534 8 N -0.378 5.378 9 C 0.165 3.835 10 C -0.592 4.592 11 H 0.099 0.901 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.812 3.188 15 H -0.177 1.177 16 H -0.202 1.202 17 H -0.203 1.203 18 C 0.083 3.917 19 C -0.201 4.201 20 C -0.196 4.196 21 H 0.095 0.905 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.234 0.766 30 H 0.000 1.000 31 H -0.001 1.001 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.274 8.914 -1.180 22.178 hybrid contribution 1.154 -0.542 0.669 1.440 sum -19.120 8.372 -0.511 20.879 Atomic orbital electron populations 1.21739 0.90105 1.03306 1.03627 1.22375 0.97455 0.94288 0.93026 1.21565 0.99245 0.93960 1.03403 1.23605 0.88859 0.97073 0.92687 1.49556 1.10780 1.67395 1.12437 1.15943 0.81132 0.77695 0.83989 1.90801 1.67840 1.62029 1.32683 1.45292 1.17674 1.68324 1.06497 1.18378 0.77303 0.90972 0.96854 1.21593 1.01253 1.44781 0.91581 0.90053 1.26110 0.96241 0.94108 1.03145 1.70159 1.09439 1.43472 1.33951 0.85045 0.78446 0.77913 0.77376 1.17655 1.20245 1.20261 1.22410 0.85712 0.93630 0.89926 1.21966 0.99508 0.97018 1.01571 1.21818 1.00735 0.99823 0.97207 0.90507 0.90667 0.91221 0.95269 0.90824 0.90047 0.89932 0.88288 0.76605 1.00025 1.00067 0.92166 0.87437 0.94295 0.91657 0.94134 0.94616 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.06 71.98 0.58 -0.76 16 2 C -0.07 -1.27 1.31 -51.52 -0.07 -1.33 16 3 C -0.12 -2.24 7.90 71.98 0.57 -1.68 16 4 C 0.10 2.23 7.19 86.48 0.62 2.85 16 5 N -0.66 -22.25 3.15 -806.50 -2.54 -24.78 16 6 C 0.71 33.37 8.66 179.06 1.55 34.92 16 7 O -0.65 -36.99 16.52 -3.98 -0.07 -37.05 16 8 N -0.72 -34.83 5.55 -482.30 -2.68 -37.51 16 9 C 0.29 17.10 5.43 85.63 0.46 17.56 16 10 C -0.55 -31.69 9.28 25.60 0.24 -31.45 16 11 H 0.08 4.23 7.60 -2.91 -0.02 4.21 16 12 C 0.00 0.19 5.46 84.65 0.46 0.66 16 13 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 14 Si 0.99 43.44 29.54 68.60 2.03 45.47 16 15 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 C 0.17 4.26 1.49 3.70 0.01 4.27 16 19 C -0.14 -3.03 8.07 71.98 0.58 -2.45 16 20 C -0.14 -3.79 7.63 71.98 0.55 -3.24 16 21 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.07 0.66 7.01 -2.39 -0.02 0.64 16 24 H 0.03 0.72 7.71 -2.38 -0.02 0.70 16 25 H 0.07 1.15 7.57 -2.39 -0.02 1.13 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 28 H 0.10 1.83 7.64 -2.39 -0.02 1.81 16 29 H 0.40 16.38 7.93 -92.71 -0.74 15.64 16 30 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 31 H -0.02 -1.24 8.14 -2.38 -0.02 -1.26 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.11 1.47 7.41 -2.39 -0.02 1.45 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.34 7.35 -2.39 -0.02 1.32 16 36 H 0.04 1.28 7.26 -2.38 -0.02 1.27 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.88 8.06 -2.39 -0.02 1.86 16 Total: -1.00 -78.58 308.77 2.88 -75.71 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.29 Total: 16.57 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 5.55 Total: 19.35 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -4.93 Total: -120.04 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.07 Total: -37.05 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -78.58 2.88 -75.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321080098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.180 kcal (2) G-P(sol) polarization free energy of solvation -78.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds