Wall clock time and date at job start Thu Apr 9 2020 12:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 119.99964 * 2 1 4 4 H 1.08002 * 119.99999 * 202.35252 * 3 2 1 5 5 C 1.38813 * 120.00059 * 22.34870 * 3 2 1 6 6 N 1.31615 * 120.00047 * 11.34717 * 5 3 2 7 7 Si 1.86799 * 120.00141 * 191.34260 * 5 3 2 8 8 H 1.48498 * 109.47175 * 90.00204 * 7 5 3 9 9 H 1.48503 * 109.47300 * 210.00211 * 7 5 3 10 10 H 1.48508 * 109.47086 * 330.00245 * 7 5 3 11 11 C 1.46493 * 120.00090 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47121 * 269.99805 * 11 2 1 13 13 N 1.46501 * 109.47285 * 179.97438 * 12 11 2 14 14 C 1.34772 * 119.99914 * 179.97438 * 13 12 11 15 15 O 1.21285 * 120.00491 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00047 * 179.97438 * 14 13 12 17 17 C 1.53009 * 112.84609 * 48.80685 * 16 14 13 18 18 C 1.53778 * 113.61672 * 179.97438 * 16 14 13 19 19 C 1.53781 * 87.08220 * 89.20192 * 18 16 14 20 20 C 1.53788 * 87.17063 * 25.38970 * 19 18 16 21 21 H 1.09007 * 109.46891 * 274.21197 * 1 2 3 22 22 H 1.09002 * 109.47503 * 34.20479 * 1 2 3 23 23 H 1.08992 * 109.47323 * 154.20867 * 1 2 3 24 24 H 0.97001 * 120.00418 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.47549 * 149.99247 * 11 2 1 26 26 H 1.09002 * 109.47002 * 29.99391 * 11 2 1 27 27 H 1.09003 * 109.47244 * 60.00038 * 12 11 2 28 28 H 1.09002 * 109.46844 * 299.99682 * 12 11 2 29 29 H 0.97002 * 120.00018 * 359.97438 * 13 12 11 30 30 H 1.08999 * 109.46633 * 191.19735 * 17 16 14 31 31 H 1.08996 * 109.46621 * 311.19093 * 17 16 14 32 32 H 1.08995 * 109.47210 * 71.19443 * 17 16 14 33 33 H 1.09005 * 113.61554 * 334.65505 * 18 16 14 34 34 H 1.09007 * 113.61795 * 203.75130 * 18 16 14 35 35 H 1.09000 * 113.61882 * 139.97714 * 19 18 16 36 36 H 1.09001 * 113.61572 * 270.80598 * 19 18 16 37 37 H 1.09000 * 113.61383 * 89.15761 * 20 19 18 38 38 H 1.08996 * 113.61428 * 220.06167 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2210 -0.3557 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0937 7 14 2.3367 4.0048 0.1689 8 1 1.8679 4.5633 -1.1247 9 1 1.9682 4.9303 1.2702 10 1 3.8123 3.8419 0.1320 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 7 3.1845 -2.9800 1.4412 14 6 3.5218 -3.5638 2.6081 15 8 3.2199 -3.0384 3.6587 16 6 4.2743 -4.8695 2.6076 17 6 5.4896 -4.8545 1.6781 18 6 4.5835 -5.4029 4.0164 19 6 3.2274 -6.1256 3.9549 20 6 3.3704 -6.1021 2.4239 21 1 -0.3633 0.0755 1.0250 22 1 -0.3634 0.8499 -0.5777 23 1 -0.3633 -0.9252 -0.4471 24 1 -0.0463 3.0775 1.4128 25 1 3.1499 -1.1382 -0.5144 26 1 1.6084 -2.0281 -0.5147 27 1 1.5001 -1.8415 1.9555 28 1 3.0417 -0.9515 1.9558 29 1 3.4264 -3.4000 0.6009 30 1 5.8730 -5.8685 1.5650 31 1 5.1962 -4.4661 0.7028 32 1 6.2652 -4.2182 2.1043 33 1 4.6292 -4.6243 4.7778 34 1 5.4376 -6.0794 4.0495 35 1 3.2477 -7.1291 4.3800 36 1 2.3959 -5.5258 4.3249 37 1 3.8923 -6.9700 2.0207 38 1 2.4383 -5.8872 1.9015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663249346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:25 Heat of formation + Delta-G solvation = -2.272700 kcal Electronic energy + Delta-G solvation = -17500.919576 eV Core-core repulsion = 14765.599766 eV Total energy + Delta-G solvation = -2735.319810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.50435 -37.45170 -35.92272 -34.12678 -31.40419 -30.19130 -27.97839 -25.87786 -25.72357 -24.28769 -22.90541 -21.15300 -20.62563 -18.81980 -16.76336 -16.44385 -15.72739 -15.34121 -14.73909 -14.61534 -14.34946 -13.76949 -13.38971 -13.31984 -12.99109 -12.64088 -12.45641 -12.25730 -12.14045 -11.42256 -11.19902 -10.98369 -10.87419 -10.83335 -10.58561 -10.38371 -10.30278 -10.26084 -9.98558 -9.89397 -9.41372 -8.60729 -8.53841 -6.82073 -5.74024 -3.21427 2.90026 3.37834 3.43760 3.46287 3.49977 4.38280 4.49079 4.50696 4.71644 4.76053 5.03998 5.33947 5.40900 5.51145 5.56082 5.56925 5.64108 5.68897 5.82120 5.88954 5.91564 6.00110 6.05234 6.16437 6.28135 6.35002 6.70631 6.73799 6.76936 7.00887 7.36872 7.72043 7.80338 7.87648 8.37317 8.57786 9.21370 9.83371 10.31533 11.31103 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039834 B = 0.004797 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.749696 B = 5835.498089 C = 5948.195713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.722 5.722 14 C 0.530 3.470 15 O -0.540 6.540 16 C -0.113 4.113 17 C -0.134 4.134 18 C -0.118 4.118 19 C -0.141 4.141 20 C -0.122 4.122 21 H 0.029 0.971 22 H 0.047 0.953 23 H -0.003 1.003 24 H 0.254 0.746 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.394 0.606 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 -16.820 -0.123 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.373 5.373 14 C 0.314 3.686 15 O -0.417 6.417 16 C -0.116 4.116 17 C -0.191 4.191 18 C -0.156 4.156 19 C -0.178 4.178 20 C -0.160 4.160 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.016 0.984 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.228 0.772 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.774 -16.237 0.680 17.606 hybrid contribution 0.465 0.824 -0.391 1.024 sum 7.240 -15.413 0.289 17.031 Atomic orbital electron populations 1.20846 0.82160 0.95726 0.99472 1.43923 1.02064 1.00355 1.85580 1.19233 0.98157 0.85234 1.36354 0.91204 1.25065 0.97657 0.98685 0.98076 1.70067 1.17813 1.27232 1.39970 0.86213 0.78844 0.83886 0.77331 1.21420 1.21659 1.20443 1.20986 0.96311 0.88899 0.92210 1.22513 0.95696 0.82858 1.02048 1.46158 1.58147 1.25079 1.07875 1.19902 0.79263 0.85290 0.84094 1.90691 1.54703 1.64849 1.31447 1.22030 0.97044 0.93520 0.99044 1.21717 0.96372 1.02383 0.98626 1.22825 0.97445 0.99863 0.95484 1.22831 0.98517 1.00629 0.95861 1.22979 0.99384 0.96155 0.97474 0.95241 0.93422 0.98404 0.93622 0.93361 0.94032 0.92297 0.91377 0.77225 0.91671 0.92120 0.91937 0.90093 0.89741 0.91432 0.89729 0.89270 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 9.01 59.85 0.54 4.58 16 2 N -0.60 -15.06 2.93 -181.12 -0.53 -15.59 16 3 C -0.26 -7.18 9.67 -15.06 -0.15 -7.33 16 4 H 0.07 1.88 7.84 -52.49 -0.41 1.46 16 5 C 0.00 0.11 5.13 -17.43 -0.09 0.02 16 6 N -0.91 -26.76 10.58 55.49 0.59 -26.18 16 7 Si 0.91 22.05 29.57 -169.99 -5.03 17.02 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.14 2.89 5.82 -4.05 -0.02 2.86 16 12 C 0.09 1.89 6.00 -4.04 -0.02 1.86 16 13 N -0.72 -11.26 5.44 -60.29 -0.33 -11.59 16 14 C 0.53 8.64 6.66 -10.99 -0.07 8.57 16 15 O -0.54 -11.27 15.75 5.55 0.09 -11.18 16 16 C -0.11 -1.32 1.26 -154.75 -0.20 -1.52 16 17 C -0.13 -1.24 9.12 37.16 0.34 -0.90 16 18 C -0.12 -1.33 7.02 -25.92 -0.18 -1.52 16 19 C -0.14 -1.52 7.73 -25.92 -0.20 -1.73 16 20 C -0.12 -1.20 7.23 -25.83 -0.19 -1.39 16 21 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 22 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 23 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 24 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 26 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.39 4.83 7.36 -40.82 -0.30 4.53 16 30 H 0.06 0.47 7.95 -51.93 -0.41 0.06 16 31 H 0.06 0.52 7.00 -51.93 -0.36 0.16 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.09 7.43 -51.93 -0.39 0.71 16 34 H 0.08 0.75 8.10 -51.92 -0.42 0.33 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.09 0.68 7.97 -51.93 -0.41 0.26 16 38 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -32.16 309.30 -7.16 -39.32 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.37 Total: 0.02 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.24 Total: 3.52 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.27 Total: -53.36 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.16 -7.16 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663249346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.045 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds