Wall clock time and date at job start Thu Apr 9 2020 12:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 119.99964 * 2 1 4 4 H 1.08002 * 119.99999 * 202.35252 * 3 2 1 5 5 C 1.38813 * 120.00059 * 22.34870 * 3 2 1 6 6 N 1.31615 * 120.00047 * 11.34717 * 5 3 2 7 7 Si 1.86799 * 120.00141 * 191.34260 * 5 3 2 8 8 H 1.48498 * 109.47175 * 90.00204 * 7 5 3 9 9 H 1.48503 * 109.47300 * 210.00211 * 7 5 3 10 10 H 1.48508 * 109.47086 * 330.00245 * 7 5 3 11 11 C 1.46493 * 120.00090 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47121 * 269.99805 * 11 2 1 13 13 N 1.46501 * 109.47285 * 179.97438 * 12 11 2 14 14 C 1.34772 * 119.99914 * 179.97438 * 13 12 11 15 15 O 1.21285 * 120.00491 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00047 * 179.97438 * 14 13 12 17 17 C 1.53009 * 112.84609 * 48.80685 * 16 14 13 18 18 C 1.53778 * 113.61672 * 179.97438 * 16 14 13 19 19 C 1.53781 * 87.08220 * 89.20192 * 18 16 14 20 20 C 1.53788 * 87.17063 * 25.38970 * 19 18 16 21 21 H 1.09007 * 109.46891 * 274.21197 * 1 2 3 22 22 H 1.09002 * 109.47503 * 34.20479 * 1 2 3 23 23 H 1.08992 * 109.47323 * 154.20867 * 1 2 3 24 24 H 0.97001 * 120.00418 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.47549 * 149.99247 * 11 2 1 26 26 H 1.09002 * 109.47002 * 29.99391 * 11 2 1 27 27 H 1.09003 * 109.47244 * 60.00038 * 12 11 2 28 28 H 1.09002 * 109.46844 * 299.99682 * 12 11 2 29 29 H 0.97002 * 120.00018 * 359.97438 * 13 12 11 30 30 H 1.08999 * 109.46633 * 191.19735 * 17 16 14 31 31 H 1.08996 * 109.46621 * 311.19093 * 17 16 14 32 32 H 1.08995 * 109.47210 * 71.19443 * 17 16 14 33 33 H 1.09005 * 113.61554 * 334.65505 * 18 16 14 34 34 H 1.09007 * 113.61795 * 203.75130 * 18 16 14 35 35 H 1.09000 * 113.61882 * 139.97714 * 19 18 16 36 36 H 1.09001 * 113.61572 * 270.80598 * 19 18 16 37 37 H 1.09000 * 113.61383 * 89.15761 * 20 19 18 38 38 H 1.08996 * 113.61428 * 220.06167 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2210 -0.3557 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0937 7 14 2.3367 4.0048 0.1689 8 1 1.8679 4.5633 -1.1247 9 1 1.9682 4.9303 1.2702 10 1 3.8123 3.8419 0.1320 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 7 3.1845 -2.9800 1.4412 14 6 3.5218 -3.5638 2.6081 15 8 3.2199 -3.0384 3.6587 16 6 4.2743 -4.8695 2.6076 17 6 5.4896 -4.8545 1.6781 18 6 4.5835 -5.4029 4.0164 19 6 3.2274 -6.1256 3.9549 20 6 3.3704 -6.1021 2.4239 21 1 -0.3633 0.0755 1.0250 22 1 -0.3634 0.8499 -0.5777 23 1 -0.3633 -0.9252 -0.4471 24 1 -0.0463 3.0775 1.4128 25 1 3.1499 -1.1382 -0.5144 26 1 1.6084 -2.0281 -0.5147 27 1 1.5001 -1.8415 1.9555 28 1 3.0417 -0.9515 1.9558 29 1 3.4264 -3.4000 0.6009 30 1 5.8730 -5.8685 1.5650 31 1 5.1962 -4.4661 0.7028 32 1 6.2652 -4.2182 2.1043 33 1 4.6292 -4.6243 4.7778 34 1 5.4376 -6.0794 4.0495 35 1 3.2477 -7.1291 4.3800 36 1 2.3959 -5.5258 4.3249 37 1 3.8923 -6.9700 2.0207 38 1 2.4383 -5.8872 1.9015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663249346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:25 Heat of formation + Delta-G solvation = -23.910492 kcal Electronic energy + Delta-G solvation = -17501.857861 eV Core-core repulsion = 14765.599766 eV Total energy + Delta-G solvation = -2736.258095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64405 -38.69381 -37.70528 -35.76584 -33.33635 -31.22894 -29.54957 -27.94896 -26.57043 -25.68067 -24.28435 -22.48454 -22.26621 -20.07346 -18.78746 -17.53020 -17.15313 -16.75984 -16.55540 -15.88244 -15.65930 -15.38515 -14.82733 -14.54483 -14.38640 -14.05757 -13.97877 -13.42787 -13.13021 -13.07002 -12.82018 -12.67294 -12.48351 -12.23065 -12.10819 -12.03271 -11.86280 -11.78252 -11.21679 -11.17897 -10.75033 -10.67254 -10.09258 -8.88915 -7.86858 -5.36826 1.45626 1.46627 1.55597 1.60828 2.15872 2.51008 3.28753 3.48711 3.61273 3.66617 3.86640 3.92640 4.10782 4.20651 4.31657 4.55406 4.62615 4.77297 4.82004 4.82865 4.85926 4.88837 5.03200 5.03542 5.13128 5.16026 5.21927 5.29966 5.33392 5.46500 5.52877 5.60879 5.69803 6.28930 6.60451 7.10645 7.29418 7.81257 8.23739 9.17065 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039834 B = 0.004797 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.749696 B = 5835.498089 C = 5948.195713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.615 5.615 3 C -0.267 4.267 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.267 1.267 11 C 0.148 3.852 12 C 0.116 3.884 13 N -0.707 5.707 14 C 0.522 3.478 15 O -0.595 6.595 16 C -0.113 4.113 17 C -0.131 4.131 18 C -0.119 4.119 19 C -0.147 4.147 20 C -0.107 4.107 21 H -0.003 1.003 22 H 0.022 0.978 23 H 0.036 0.964 24 H 0.248 0.752 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.027 0.973 29 H 0.415 0.585 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.128 0.872 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.998 -19.216 -1.900 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.338 5.338 3 C -0.397 4.397 4 H 0.095 0.905 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.207 1.207 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.021 3.979 12 C -0.012 4.012 13 N -0.359 5.359 14 C 0.309 3.691 15 O -0.475 6.475 16 C -0.117 4.117 17 C -0.188 4.188 18 C -0.157 4.157 19 C -0.184 4.184 20 C -0.144 4.144 21 H 0.015 0.985 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.253 0.747 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.146 0.854 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.665 -18.686 -1.146 20.629 hybrid contribution -0.095 1.482 0.190 1.497 sum 8.570 -17.203 -0.955 19.243 Atomic orbital electron populations 1.20600 0.82441 0.96517 0.97428 1.44181 1.02376 1.01621 1.85617 1.19617 0.98416 0.86393 1.35317 0.90549 1.25874 0.98416 1.02214 0.98441 1.70251 1.19364 1.27593 1.41524 0.85199 0.78455 0.79492 0.76897 1.20741 1.22466 1.19202 1.21131 0.97176 0.87597 0.92040 1.21917 0.94035 0.83888 1.01317 1.45884 1.57390 1.23534 1.09105 1.20895 0.78513 0.86587 0.83063 1.90671 1.56780 1.66659 1.33416 1.22029 0.98014 0.91230 1.00381 1.21762 0.94669 1.04357 0.98006 1.22923 0.98988 0.99576 0.94188 1.22818 0.97052 1.01279 0.97255 1.23032 0.98964 0.96039 0.96371 0.98459 0.95874 0.94548 0.94264 0.91617 0.90672 0.95154 0.95452 0.74722 0.88429 0.91275 0.92820 0.93443 0.86302 0.88893 0.93194 0.85411 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.79 9.01 127.77 1.15 9.94 16 2 N -0.62 -30.96 2.93 -726.95 -2.13 -33.08 16 3 C -0.27 -14.78 9.67 84.03 0.81 -13.96 16 4 H 0.08 4.04 7.84 -2.91 -0.02 4.02 16 5 C -0.05 -3.11 5.13 84.86 0.44 -2.67 16 6 N -0.94 -57.28 10.58 21.65 0.23 -57.05 16 7 Si 0.97 45.80 29.57 68.60 2.03 47.82 16 8 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 9 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 C 0.15 5.68 5.82 86.38 0.50 6.18 16 12 C 0.12 4.68 6.00 86.38 0.52 5.19 16 13 N -0.71 -21.42 5.44 -463.05 -2.52 -23.93 16 14 C 0.52 17.01 6.66 87.66 0.58 17.59 16 15 O -0.59 -26.05 15.75 -3.05 -0.05 -26.09 16 16 C -0.11 -2.41 1.26 -52.34 -0.07 -2.47 16 17 C -0.13 -1.93 9.12 71.99 0.66 -1.27 16 18 C -0.12 -2.49 7.02 31.12 0.22 -2.27 16 19 C -0.15 -2.94 7.73 31.12 0.24 -2.70 16 20 C -0.11 -1.73 7.23 31.18 0.23 -1.51 16 21 H 0.00 -0.17 7.42 -2.38 -0.02 -0.18 16 22 H 0.02 1.23 7.19 -2.39 -0.02 1.22 16 23 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 24 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 25 H 0.07 2.32 8.03 -2.39 -0.02 2.31 16 26 H 0.08 2.42 7.86 -2.39 -0.02 2.40 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.42 9.04 7.36 -92.71 -0.68 8.36 16 30 H 0.10 0.87 7.95 -2.39 -0.02 0.85 16 31 H 0.07 0.90 7.00 -2.39 -0.02 0.89 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.31 7.43 -2.38 -0.02 1.29 16 34 H 0.12 1.66 8.10 -2.38 -0.02 1.64 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.34 8.08 -2.39 -0.02 1.32 16 37 H 0.13 1.18 7.97 -2.39 -0.02 1.17 16 38 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 Total: -1.00 -73.72 309.30 3.19 -70.53 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.35 Total: 9.76 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.28 Total: 12.05 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -4.41 Total: -114.07 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.72 3.19 -70.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663249346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.617 kcal (2) G-P(sol) polarization free energy of solvation -73.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds