Wall clock time and date at job start Thu Apr 9 2020 12:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47155 * 2 1 4 4 C 1.53005 * 109.47211 * 119.99566 * 2 1 3 5 5 N 1.46499 * 109.47186 * 295.00021 * 4 2 1 6 6 C 1.36938 * 119.99967 * 179.97438 * 5 4 2 7 7 H 1.07991 * 120.00273 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99736 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99291 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00099 * 0.02562 * 8 6 5 11 11 H 1.48490 * 109.47418 * 90.00088 * 10 8 6 12 12 H 1.48499 * 109.46820 * 209.99959 * 10 8 6 13 13 H 1.48502 * 109.47027 * 329.99477 * 10 8 6 14 14 C 1.53000 * 109.47154 * 239.99690 * 2 1 3 15 15 N 1.46503 * 109.46976 * 64.99872 * 14 2 1 16 16 C 1.34777 * 119.99758 * 179.97438 * 15 14 2 17 17 O 1.21279 * 119.99958 * 0.02562 * 16 15 14 18 18 C 1.50691 * 119.99736 * 180.02562 * 16 15 14 19 19 H 1.09005 * 115.55487 * 325.66676 * 18 16 15 20 20 C 1.53075 * 117.51426 * 111.39509 * 18 16 15 21 21 C 1.52998 * 59.98501 * 107.47892 * 20 18 16 22 22 H 1.09001 * 117.49349 * 252.49867 * 21 20 18 23 23 C 1.52997 * 117.50214 * 107.50627 * 21 20 18 24 24 H 1.09005 * 109.47108 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47325 * 300.00280 * 1 2 3 26 26 H 1.08994 * 109.47419 * 60.00282 * 1 2 3 27 27 H 1.09000 * 109.47192 * 54.99994 * 4 2 1 28 28 H 1.08998 * 109.47183 * 175.00080 * 4 2 1 29 29 H 0.97007 * 120.00012 * 0.02562 * 5 4 2 30 30 H 0.97003 * 119.99059 * 180.02562 * 9 8 6 31 31 H 1.09003 * 109.46955 * 304.99768 * 14 2 1 32 32 H 1.09001 * 109.47199 * 185.00114 * 14 2 1 33 33 H 0.96994 * 119.99862 * 0.02562 * 15 14 2 34 34 H 1.08996 * 117.49148 * 359.97438 * 20 18 16 35 35 H 1.09004 * 117.51186 * 214.95579 * 20 18 16 36 36 H 1.09002 * 109.47153 * 351.24871 * 23 21 20 37 37 H 1.09001 * 109.46832 * 231.25062 * 23 21 20 38 38 H 1.09004 * 109.47261 * 111.25043 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 0.0355 2.4424 6 6 2.0011 -0.4206 3.6856 7 1 2.5621 -1.3378 3.7866 8 6 1.6334 0.2962 4.8162 9 7 1.9690 -0.1420 6.0110 10 14 0.6624 1.8824 4.6416 11 1 -0.7908 1.5784 4.6656 12 1 0.9962 2.7933 5.7658 13 1 1.0102 2.5365 3.3546 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0353 -2.4424 16 6 1.9964 -0.4133 -3.6659 17 8 2.6264 -1.4434 -3.7791 18 6 1.5982 0.3652 -4.8931 19 1 0.6368 0.8756 -4.8348 20 6 2.7129 1.0461 -5.6912 21 6 2.0185 -0.1960 -6.2530 22 1 2.5831 -1.1284 -6.2599 23 6 1.0573 0.0020 -7.4268 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7994 1.2057 29 1 1.1482 0.8592 2.3518 30 1 1.7117 0.3587 6.8010 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7996 -1.2055 33 1 1.1488 0.8593 -2.3517 34 1 3.7341 0.9311 -5.3280 35 1 2.4850 2.0045 -6.1578 36 1 0.8984 1.0679 -7.5905 37 1 0.1045 -0.4769 -7.2009 38 1 1.4841 -0.4439 -8.3252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753625574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:06 Heat of formation + Delta-G solvation = -16.773917 kcal Electronic energy + Delta-G solvation = -16775.051162 eV Core-core repulsion = 14039.102532 eV Total energy + Delta-G solvation = -2735.948630 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13728 -37.58400 -36.52647 -34.47457 -32.50188 -30.57807 -29.11653 -26.86093 -25.85630 -23.70625 -21.93257 -21.07020 -20.50531 -19.80503 -17.84465 -17.21248 -16.15624 -15.55556 -14.91791 -14.75653 -14.36413 -14.00220 -13.82552 -13.51379 -13.28446 -12.99645 -12.62286 -12.48580 -12.34973 -12.18708 -11.73503 -11.45975 -11.06653 -10.79808 -10.67472 -10.63211 -10.59675 -10.38487 -10.14293 -9.85542 -9.58893 -9.09005 -8.91101 -7.24340 -5.77585 -3.13217 2.38695 3.03751 3.35023 3.37114 3.43362 3.55011 4.40132 4.45783 4.52091 4.57577 4.83408 4.92675 4.99143 5.08533 5.23133 5.30867 5.38530 5.41710 5.52836 5.63129 5.65520 5.71128 5.72720 5.86908 5.89313 5.99655 6.08366 6.22453 6.40266 6.44053 6.64698 6.74164 7.43429 7.98942 8.15580 8.41455 9.20246 9.92315 10.12082 11.40945 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054753 B = 0.003764 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.267646 B = 7436.356474 C = 7677.792082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.126 3.874 15 N -0.722 5.722 16 C 0.540 3.460 17 O -0.543 6.543 18 C -0.192 4.192 19 H 0.122 0.878 20 C -0.149 4.149 21 C -0.123 4.123 22 H 0.117 0.883 23 C -0.124 4.124 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.361 0.639 30 H 0.259 0.741 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 4.159 -24.967 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.373 5.373 16 C 0.326 3.674 17 O -0.421 6.421 18 C -0.213 4.213 19 H 0.140 0.860 20 C -0.187 4.187 21 C -0.141 4.141 22 H 0.135 0.865 23 C -0.181 4.181 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.194 0.806 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.610 3.256 -24.833 25.182 hybrid contribution -1.000 1.622 0.279 1.925 sum -3.610 4.878 -24.554 25.293 Atomic orbital electron populations 1.21812 0.94768 1.02286 1.01191 1.21606 0.96636 1.00558 0.94585 0.90590 1.20553 0.97209 0.94244 0.84294 1.42689 1.67889 1.27098 1.02355 1.19072 1.29530 1.07053 0.81721 0.89164 1.24681 1.00830 0.98627 0.95101 1.69706 1.51277 1.40309 0.96928 0.86540 0.80435 0.84614 0.76894 1.21061 1.21698 1.20403 1.21403 1.00280 0.95309 0.82730 1.45992 1.57746 1.27764 1.05799 1.19643 0.78981 0.84972 0.83835 1.90698 1.40255 1.24443 1.86682 1.22331 1.01411 1.05708 0.91882 0.85987 1.23115 0.96727 0.97089 1.01741 1.22374 1.01197 0.98836 0.91737 0.86479 1.21404 0.98475 1.01775 0.96424 0.92338 0.91863 0.93625 0.95095 0.95268 0.80638 0.93048 0.91158 0.91204 0.76516 0.88231 0.87812 0.92373 0.91931 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.94 37.16 0.33 -1.60 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.87 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.75 -17.78 5.13 -59.91 -0.31 -18.09 16 6 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 10 Si 0.88 21.98 27.74 -169.99 -4.71 17.27 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 14 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 15 N -0.72 -8.15 5.28 -60.29 -0.32 -8.47 16 16 C 0.54 6.74 7.61 -10.99 -0.08 6.66 16 17 O -0.54 -8.96 16.26 5.56 0.09 -8.87 16 18 C -0.19 -1.72 5.91 -91.74 -0.54 -2.26 16 19 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.15 -1.16 9.88 -26.69 -0.26 -1.42 16 21 C -0.12 -1.05 5.92 -90.62 -0.54 -1.58 16 22 H 0.12 1.20 7.67 -51.93 -0.40 0.81 16 23 C -0.12 -0.77 10.19 37.16 0.38 -0.39 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.96 7.18 -51.92 -0.37 0.59 16 26 H 0.04 0.49 7.18 -51.93 -0.37 0.11 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.36 8.20 4.71 -40.82 -0.19 8.01 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.54 7.65 -40.82 -0.31 3.23 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.60 8.05 -51.93 -0.42 0.18 16 36 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -33.43 314.85 -7.26 -40.69 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.30 Total: 6.27 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.24 Total: -4.80 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.15 Total: -55.30 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.43 -7.26 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753625574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.917 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds