Wall clock time and date at job start Thu Apr 9 2020 12:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46949 * 2 1 4 4 C 1.52999 * 109.47217 * 240.00090 * 2 1 3 5 5 N 1.46496 * 109.47310 * 184.99780 * 4 2 1 6 6 C 1.46497 * 120.00127 * 270.00419 * 5 4 2 7 7 C 1.36945 * 119.99940 * 89.99985 * 5 4 2 8 8 H 1.08003 * 119.99718 * 342.71171 * 7 5 4 9 9 C 1.38809 * 119.99934 * 162.99093 * 7 5 4 10 10 N 1.31623 * 119.99697 * 345.44770 * 9 7 5 11 11 Si 1.86798 * 120.00138 * 165.45383 * 9 7 5 12 12 H 1.48503 * 109.46929 * 59.99181 * 11 9 7 13 13 H 1.48495 * 109.47191 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47044 * 299.99906 * 11 9 7 15 15 N 1.46499 * 109.47110 * 120.00007 * 2 1 3 16 16 C 1.34781 * 120.00064 * 274.99887 * 15 2 1 17 17 O 1.21278 * 120.00043 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99856 * 180.02562 * 16 15 2 19 19 C 1.53781 * 113.61312 * 279.13675 * 18 16 15 20 20 C 1.53953 * 87.02029 * 220.05237 * 19 18 16 21 21 C 1.53782 * 113.61108 * 181.53090 * 18 16 15 22 22 H 1.08997 * 109.47117 * 299.99674 * 1 2 3 23 23 H 1.08998 * 109.47660 * 60.00026 * 1 2 3 24 24 H 1.08999 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46995 * 64.99508 * 4 2 1 26 26 H 1.08996 * 109.46908 * 304.99973 * 4 2 1 27 27 H 1.09003 * 109.46728 * 265.06598 * 6 5 4 28 28 H 1.08998 * 109.47431 * 25.06039 * 6 5 4 29 29 H 1.09001 * 109.47529 * 145.06822 * 6 5 4 30 30 H 0.97009 * 119.99414 * 180.02562 * 10 9 7 31 31 H 0.96996 * 119.99893 * 95.00388 * 15 2 1 32 32 H 1.09002 * 112.85091 * 50.33249 * 18 16 15 33 33 H 1.09002 * 113.61327 * 334.56873 * 19 18 16 34 34 H 1.08996 * 113.61627 * 105.47260 * 19 18 16 35 35 H 1.09002 * 113.53616 * 270.81471 * 20 19 18 36 36 H 1.08999 * 113.74600 * 139.94609 * 20 19 18 37 37 H 1.08999 * 113.61096 * 254.52881 * 21 18 16 38 38 H 1.09001 * 113.61555 * 25.34850 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.3342 0.2342 -1.7612 7 6 4.0850 -1.9158 -0.6023 8 1 3.5078 -2.5498 0.0545 9 6 5.4212 -2.2021 -0.8457 10 7 6.0483 -1.6171 -1.8442 11 14 6.3295 -3.4177 0.2438 12 1 5.6602 -4.7415 0.1734 13 1 7.7332 -3.5476 -0.2228 14 1 6.3167 -2.9306 1.6466 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8582 1.1584 2.4118 18 6 2.6499 -0.7286 3.5875 19 6 1.5675 -1.5452 4.3130 20 6 2.1866 -1.0444 5.6306 21 6 2.7041 0.1667 4.8367 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.7515 -0.1583 -2.1370 26 1 1.6054 -1.7197 -1.2951 27 1 4.6150 -0.0331 -2.7800 28 1 3.7754 1.1699 -1.7720 29 1 5.2330 0.3545 -1.1564 30 1 6.9821 -1.8175 -2.0145 31 1 2.2490 -1.6317 1.1526 32 1 3.5701 -1.2849 3.4087 33 1 0.5553 -1.1797 4.1396 34 1 1.6609 -2.6212 4.1668 35 1 2.9796 -1.6881 6.0112 36 1 1.4500 -0.7855 6.3912 37 1 3.7139 0.4705 5.1126 38 1 2.0043 1.0018 4.8061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268720038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:07 Heat of formation + Delta-G solvation = -2.264783 kcal Electronic energy + Delta-G solvation = -18141.226892 eV Core-core repulsion = 15405.907426 eV Total energy + Delta-G solvation = -2735.319466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.85023 -37.53957 -36.06274 -33.98753 -31.36687 -30.13254 -26.41988 -26.11745 -25.62485 -25.49755 -22.01366 -20.81635 -19.80772 -19.09395 -17.24759 -16.44910 -15.69957 -15.27284 -15.02511 -14.22943 -14.08037 -13.72294 -13.06244 -12.95092 -12.54511 -12.35461 -12.21392 -11.96442 -11.86844 -11.57670 -11.07398 -10.98446 -10.85867 -10.83785 -10.44365 -10.37479 -10.30245 -10.26458 -10.03321 -9.86617 -9.11364 -8.55400 -8.35029 -6.81795 -5.74912 -3.16472 3.19643 3.33867 3.39130 3.41308 3.85965 4.45419 4.65470 4.74919 4.90078 4.93949 5.31301 5.46877 5.51749 5.63764 5.71608 5.77175 5.83692 5.87692 5.89772 5.96143 6.06088 6.16109 6.22060 6.22300 6.47274 6.48558 6.53451 6.78039 6.84818 7.21946 7.44127 7.63874 7.79556 8.23234 8.33803 8.87753 9.19974 9.84587 10.32668 11.30092 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.009175 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.048300 B = 3051.107130 C = 4070.259109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.116 3.884 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.601 5.601 6 C 0.166 3.834 7 C -0.249 4.249 8 H 0.066 0.934 9 C 0.000 4.000 10 N -0.906 5.906 11 Si 0.900 3.100 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.285 1.285 15 N -0.694 5.694 16 C 0.523 3.477 17 O -0.562 6.562 18 C -0.139 4.139 19 C -0.123 4.123 20 C -0.142 4.142 21 C -0.117 4.117 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.026 0.974 28 H -0.005 1.005 29 H 0.047 0.953 30 H 0.253 0.747 31 H 0.402 0.598 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 -0.123 9.010 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.323 5.323 6 C 0.021 3.979 7 C -0.379 4.379 8 H 0.084 0.916 9 C -0.198 4.198 10 N -0.552 5.552 11 Si 0.730 3.270 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 N -0.343 5.343 16 C 0.309 3.691 17 O -0.441 6.441 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.179 4.179 21 C -0.155 4.155 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.013 0.987 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.238 0.762 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.575 0.685 8.928 12.398 hybrid contribution 0.850 -1.134 0.427 1.480 sum -7.725 -0.449 9.355 12.141 Atomic orbital electron populations 1.22115 0.96688 1.01318 1.01528 1.21849 0.92105 0.98296 0.86953 0.90639 1.21044 0.85972 0.98203 0.93417 1.43858 0.98924 1.21243 1.68263 1.20796 0.93043 0.86034 0.98035 1.19008 0.94058 1.04032 1.20780 0.91586 1.24899 0.98100 0.99247 0.97573 1.70099 1.10810 1.45849 1.28428 0.86402 0.79272 0.80915 0.80393 1.20973 1.21639 1.21128 1.45938 1.65299 1.14308 1.08782 1.20319 0.77302 0.86981 0.84512 1.90605 1.51908 1.16202 1.85431 1.22776 1.00855 0.99369 0.93047 1.22822 0.97954 0.99687 0.95666 1.22856 1.00495 0.98200 0.96395 1.22760 1.02202 0.97000 0.93529 0.93007 0.92204 0.92953 0.93064 0.93098 0.95561 0.98653 0.93397 0.93703 0.76180 0.86921 0.89968 0.90841 0.90089 0.91359 0.91322 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 2 C 0.12 2.11 2.88 -67.93 -0.20 1.91 16 3 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 4 C 0.14 2.78 5.30 -4.04 -0.02 2.76 16 5 N -0.60 -14.54 2.82 -181.12 -0.51 -15.06 16 6 C 0.17 4.13 8.97 59.85 0.54 4.67 16 7 C -0.25 -6.42 8.81 -15.06 -0.13 -6.55 16 8 H 0.07 1.59 6.40 -52.48 -0.34 1.25 16 9 C 0.00 0.00 5.09 -17.43 -0.09 -0.09 16 10 N -0.91 -26.07 10.45 55.49 0.58 -25.49 16 11 Si 0.90 21.12 29.58 -169.99 -5.03 16.09 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 N -0.69 -12.59 4.49 -53.80 -0.24 -12.83 16 16 C 0.52 9.64 7.32 -10.98 -0.08 9.56 16 17 O -0.56 -12.04 15.57 5.56 0.09 -11.95 16 18 C -0.14 -2.08 4.14 -90.96 -0.38 -2.46 16 19 C -0.12 -1.48 7.64 -25.83 -0.20 -1.68 16 20 C -0.14 -1.55 8.09 -25.83 -0.21 -1.76 16 21 C -0.12 -1.58 7.40 -25.92 -0.19 -1.77 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 26 H 0.05 0.96 8.04 -51.93 -0.42 0.55 16 27 H 0.03 0.70 7.51 -51.93 -0.39 0.31 16 28 H -0.01 -0.12 8.03 -51.93 -0.42 -0.53 16 29 H 0.05 1.30 6.95 -51.93 -0.36 0.94 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.40 7.14 6.58 -40.82 -0.27 6.87 16 32 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.35 7.45 -51.93 -0.39 0.97 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -30.27 307.51 -7.41 -37.68 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.33 Total: 4.33 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.60 Total: 2.59 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.17 Total: -53.38 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.27 -7.41 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268720038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.419 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds