Wall clock time and date at job start Thu Apr 9 2020 12:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47522 * 2 1 4 4 C 1.52995 * 109.47100 * 120.00399 * 2 1 3 5 5 N 1.46501 * 109.47103 * 175.00344 * 4 2 1 6 6 C 1.46499 * 119.99610 * 269.99448 * 5 4 2 7 7 C 1.36932 * 120.00347 * 89.99440 * 5 4 2 8 8 H 1.08001 * 120.00193 * 23.61987 * 7 5 4 9 9 C 1.38813 * 119.99877 * 203.61250 * 7 5 4 10 10 N 1.31614 * 120.00178 * 11.30346 * 9 7 5 11 11 Si 1.86803 * 119.99652 * 191.29948 * 9 7 5 12 12 H 1.48497 * 109.47524 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46790 * 120.00563 * 11 9 7 14 14 H 1.48501 * 109.47255 * 240.00078 * 11 9 7 15 15 N 1.46505 * 109.47157 * 240.00078 * 2 1 3 16 16 C 1.34775 * 119.99763 * 84.72315 * 15 2 1 17 17 O 1.21284 * 120.00266 * 0.27762 * 16 15 2 18 18 C 1.50703 * 119.99835 * 180.27796 * 16 15 2 19 19 C 1.53791 * 113.61271 * 279.13707 * 18 16 15 20 20 C 1.53957 * 87.01891 * 220.04761 * 19 18 16 21 21 C 1.53779 * 113.61549 * 181.53360 * 18 16 15 22 22 H 1.09006 * 109.47190 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47328 * 300.00153 * 1 2 3 24 24 H 1.09003 * 109.47110 * 59.99772 * 1 2 3 25 25 H 1.09003 * 109.46985 * 294.99824 * 4 2 1 26 26 H 1.08997 * 109.47640 * 54.99811 * 4 2 1 27 27 H 1.08999 * 109.47390 * 94.55619 * 6 5 4 28 28 H 1.09004 * 109.47352 * 214.55762 * 6 5 4 29 29 H 1.09007 * 109.47129 * 334.55872 * 6 5 4 30 30 H 0.97003 * 120.00247 * 179.97438 * 10 9 7 31 31 H 0.96995 * 119.99773 * 264.99960 * 15 2 1 32 32 H 1.08995 * 112.84965 * 50.33043 * 18 16 15 33 33 H 1.09000 * 113.60876 * 334.56866 * 19 18 16 34 34 H 1.08997 * 113.61146 * 105.46684 * 19 18 16 35 35 H 1.09000 * 113.53609 * 270.81215 * 20 19 18 36 36 H 1.08997 * 113.66754 * 139.92941 * 20 19 18 37 37 H 1.09006 * 113.61081 * 254.52810 * 21 18 16 38 38 H 1.08996 * 113.61670 * 25.34032 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5611 7 6 4.2798 0.1648 1.7239 8 1 3.8834 0.8070 2.4965 9 6 5.5799 0.3441 1.2718 10 7 5.9919 -0.2797 0.1886 11 14 6.7447 1.4710 2.2007 12 1 6.0435 2.0479 3.3757 13 1 7.9236 0.6938 2.6607 14 1 7.1934 2.5667 1.3044 15 7 2.0183 -0.6906 -1.1962 16 6 2.1418 -0.0196 -2.3585 17 8 1.8533 1.1572 -2.4130 18 6 2.6381 -0.7315 -3.5905 19 6 4.1683 -0.8761 -3.6440 20 6 4.0651 -0.5612 -5.1474 21 6 2.7576 0.1805 -4.8229 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.7516 -0.1584 2.1369 26 1 1.6054 -1.7198 1.2951 27 1 4.3536 -1.7641 -0.4801 28 1 5.0470 -2.2391 1.0889 29 1 3.4424 -2.8400 0.6064 30 1 6.9003 -0.1541 -0.1276 31 1 2.2490 -1.6317 -1.1526 32 1 2.1046 -1.6617 -3.7857 33 1 4.6990 -0.1138 -3.0736 34 1 4.5191 -1.8860 -3.4315 35 1 3.9229 -1.4455 -5.7686 36 1 4.8579 0.0913 -5.5132 37 1 1.9712 0.0223 -5.5610 38 1 2.9005 1.2323 -4.5756 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268720039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:08 Heat of formation + Delta-G solvation = -23.239741 kcal Electronic energy + Delta-G solvation = -18346.923890 eV Core-core repulsion = 15610.694882 eV Total energy + Delta-G solvation = -2736.229009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15662 -38.81031 -37.66373 -35.69060 -33.09400 -31.82597 -27.97888 -27.54452 -27.33405 -26.47714 -23.65186 -22.24023 -21.38645 -20.18133 -18.76805 -18.34775 -17.12371 -16.75711 -16.37819 -15.79332 -15.55246 -15.20969 -14.92756 -14.51370 -13.87390 -13.70651 -13.48110 -13.37934 -13.11336 -12.91607 -12.78151 -12.68286 -12.52030 -12.28328 -12.06154 -12.02222 -11.81580 -11.69597 -11.41001 -11.24006 -10.65443 -10.51472 -9.85462 -8.69432 -7.80797 -5.26820 1.41293 1.44107 1.52296 1.81038 2.46279 2.52870 3.32625 3.62234 3.72930 3.74153 3.89472 3.96446 4.15898 4.31326 4.44069 4.56208 4.71736 4.76797 4.82940 4.85838 4.88981 4.92348 5.00704 5.07285 5.08361 5.20207 5.25536 5.38349 5.39348 5.56445 5.66483 5.78540 5.83795 6.35954 6.78148 7.19680 7.47606 7.91416 8.32152 9.20928 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.009146 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.855225 B = 3060.849549 C = 3860.536493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.120 3.880 3 H 0.031 0.969 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.174 3.826 7 C -0.262 4.262 8 H 0.064 0.936 9 C -0.047 4.047 10 N -0.923 5.923 11 Si 0.956 3.044 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.301 1.301 15 N -0.693 5.693 16 C 0.514 3.486 17 O -0.602 6.602 18 C -0.133 4.133 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.118 4.118 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.017 0.983 28 H 0.010 0.990 29 H 0.034 0.966 30 H 0.244 0.756 31 H 0.403 0.597 32 H 0.143 0.857 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -6.462 -6.901 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.049 0.951 4 C 0.016 3.984 5 N -0.333 5.333 6 C 0.029 3.971 7 C -0.392 4.392 8 H 0.081 0.919 9 C -0.243 4.243 10 N -0.569 5.569 11 Si 0.786 3.214 12 H -0.194 1.194 13 H -0.215 1.215 14 H -0.228 1.228 15 N -0.341 5.341 16 C 0.302 3.698 17 O -0.484 6.484 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.156 4.156 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.035 0.965 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.239 0.761 32 H 0.161 0.839 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.286 -5.665 -6.942 12.204 hybrid contribution 1.219 0.721 0.644 1.556 sum -7.067 -4.944 -6.299 10.680 Atomic orbital electron populations 1.22006 0.93758 1.02825 1.01724 1.21644 0.94002 0.96255 0.86876 0.95091 1.21354 0.83395 0.99166 0.94500 1.44070 1.00777 1.20477 1.68009 1.20648 0.94146 0.85959 0.96322 1.19468 0.95118 1.10727 1.13932 0.91870 1.25645 1.00354 1.00833 0.97428 1.70176 1.16775 1.46884 1.23104 0.85367 0.79402 0.78459 0.78204 1.19405 1.21529 1.22849 1.45805 1.65454 1.13988 1.08900 1.21103 0.75976 0.86838 0.85907 1.90587 1.53193 1.18264 1.86378 1.22916 0.98399 1.01488 0.92542 1.22689 0.93004 1.02145 0.97921 1.22865 0.97045 1.01253 0.94978 1.22718 0.99148 0.98058 0.95637 0.90424 0.90665 0.94363 0.92108 0.90557 0.96474 0.97128 0.94720 0.94684 0.76115 0.83948 0.93794 0.89855 0.86832 0.91336 0.88992 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.48 71.98 0.68 -3.54 16 2 C 0.12 4.57 2.88 44.99 0.13 4.70 16 3 H 0.03 1.50 7.58 -2.39 -0.02 1.48 16 4 C 0.14 5.37 5.33 86.38 0.46 5.83 16 5 N -0.61 -29.10 2.78 -726.93 -2.02 -31.12 16 6 C 0.17 7.88 7.61 127.77 0.97 8.86 16 7 C -0.26 -14.37 9.66 84.03 0.81 -13.55 16 8 H 0.06 3.44 7.85 -2.91 -0.02 3.42 16 9 C -0.05 -2.63 5.13 84.86 0.44 -2.20 16 10 N -0.92 -53.62 10.66 21.65 0.23 -53.39 16 11 Si 0.96 46.28 29.57 68.60 2.03 48.31 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 14 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 15 N -0.69 -25.36 4.41 -442.53 -1.95 -27.32 16 16 C 0.51 20.18 7.32 87.66 0.64 20.82 16 17 O -0.60 -28.87 15.57 -3.04 -0.05 -28.92 16 18 C -0.13 -3.92 4.14 -11.01 -0.05 -3.97 16 19 C -0.12 -3.75 7.64 31.18 0.24 -3.51 16 20 C -0.12 -2.96 8.09 31.18 0.25 -2.71 16 21 C -0.12 -3.26 7.40 31.12 0.23 -3.03 16 22 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 2.25 8.03 -2.39 -0.02 2.23 16 26 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 27 H 0.02 0.83 6.90 -2.39 -0.02 0.81 16 28 H 0.01 0.51 7.30 -2.38 -0.02 0.50 16 29 H 0.03 1.26 7.84 -2.38 -0.02 1.24 16 30 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.40 13.09 7.17 -92.71 -0.66 12.42 16 32 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.04 1.82 8.09 -2.39 -0.02 1.80 16 34 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.06 2.04 7.45 -2.39 -0.02 2.02 16 Total: -1.00 -69.78 308.51 3.41 -66.38 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.36 Total: 18.37 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.81 Total: 7.68 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.74 Total: -111.83 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.05 Total: -28.92 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -69.78 3.41 -66.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268720039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.137 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds