Wall clock time and date at job start Thu Apr 9 2020 12:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47001 * 2 1 4 4 C 1.52995 * 109.47441 * 239.99820 * 2 1 3 5 5 N 1.46504 * 109.47119 * 185.00075 * 4 2 1 6 6 C 1.34777 * 119.99878 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.50692 * 119.99980 * 179.97438 * 6 5 4 9 9 C 1.53006 * 115.54884 * 34.42240 * 8 6 5 10 10 C 1.52997 * 117.50454 * 248.74813 * 8 6 5 11 11 C 1.53000 * 117.50045 * 180.08667 * 8 6 5 12 12 N 1.46504 * 109.47062 * 119.99620 * 2 1 3 13 13 C 1.46498 * 120.00025 * 60.00353 * 12 2 1 14 14 C 1.36940 * 119.99767 * 240.00336 * 12 2 1 15 15 H 1.07998 * 120.00313 * 336.24634 * 14 12 2 16 16 C 1.38815 * 119.99927 * 156.24689 * 14 12 2 17 17 N 1.31621 * 119.99929 * 330.10246 * 16 14 12 18 18 Si 1.86797 * 120.00007 * 150.37870 * 16 14 12 19 19 H 1.48501 * 109.46992 * 179.72668 * 18 16 14 20 20 H 1.48502 * 109.47088 * 299.72334 * 18 16 14 21 21 H 1.48498 * 109.47200 * 59.72641 * 18 16 14 22 22 H 1.08999 * 109.47212 * 300.00125 * 1 2 3 23 23 H 1.09001 * 109.47223 * 60.00704 * 1 2 3 24 24 H 1.09006 * 109.46805 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46729 * 304.99909 * 4 2 1 26 26 H 1.09000 * 109.47127 * 64.99920 * 4 2 1 27 27 H 0.96997 * 120.00106 * 359.97438 * 5 4 2 28 28 H 1.08995 * 109.47157 * 85.57862 * 9 8 6 29 29 H 1.09000 * 109.46536 * 205.58056 * 9 8 6 30 30 H 1.08999 * 109.46725 * 325.57595 * 9 8 6 31 31 H 1.09001 * 117.49265 * 0.02562 * 10 8 6 32 32 H 1.09002 * 117.50476 * 145.01988 * 10 8 6 33 33 H 1.09001 * 117.49978 * 214.98572 * 11 8 6 34 34 H 1.09007 * 117.49931 * 0.02562 * 11 8 6 35 35 H 1.08999 * 109.46738 * 272.96763 * 13 12 2 36 36 H 1.08994 * 109.47074 * 32.96821 * 13 12 2 37 37 H 1.09004 * 109.47146 * 152.97387 * 13 12 2 38 38 H 0.97003 * 119.99575 * 354.91389 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5700 -1.8842 -3.1393 8 6 5.6750 -1.5368 -2.1303 9 6 6.2675 -1.7271 -0.7325 10 6 6.4832 -0.7119 -3.1339 11 6 6.3809 -2.2304 -3.2972 12 7 2.0183 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.8055 -0.0249 2.0976 15 1 3.3782 0.8349 1.7829 16 6 2.8675 -0.4554 3.4159 17 7 1.8296 -1.0522 3.9627 18 14 4.4211 -0.1809 4.4160 19 1 4.2302 -0.7224 5.7856 20 1 5.5594 -0.8760 3.7631 21 1 4.7086 1.2739 4.4946 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7198 -1.2950 26 1 1.7517 -0.1584 -2.1369 27 1 3.9825 -0.4621 -0.4318 28 1 6.2669 -2.7871 -0.4789 29 1 7.2902 -1.3503 -0.7172 30 1 5.6675 -1.1792 -0.0060 31 1 5.9285 -0.0910 -3.8374 32 1 7.4372 -0.3049 -2.7985 33 1 7.2676 -2.8219 -3.0691 34 1 5.7589 -2.6085 -4.1086 35 1 0.7108 -2.1451 1.9534 36 1 1.5813 -2.6097 0.4720 37 1 2.4380 -2.5680 2.0317 38 1 0.9972 -1.1254 3.4701 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282391614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:19 Heat of formation + Delta-G solvation = -18.924616 kcal Electronic energy + Delta-G solvation = -18103.934379 eV Core-core repulsion = 15367.892488 eV Total energy + Delta-G solvation = -2736.041891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.15884 -38.84260 -37.52466 -35.63720 -33.81136 -31.13746 -29.61793 -28.15301 -27.39654 -24.80299 -23.75506 -23.37087 -21.26115 -20.20316 -19.41725 -17.95097 -17.17727 -16.96099 -16.04168 -15.86843 -15.54864 -15.39010 -15.07027 -14.53011 -14.07119 -13.88919 -13.69324 -13.43493 -13.25620 -13.16295 -12.91207 -12.70500 -12.47527 -12.39196 -12.35398 -11.91480 -11.82595 -11.52121 -11.41934 -10.96151 -10.77552 -10.39955 -10.01303 -8.98049 -8.22372 -5.32125 1.50247 1.62647 1.68985 1.86633 2.25690 2.68740 2.86352 3.24697 3.48496 3.66775 3.78541 3.92381 3.94036 4.05170 4.23373 4.44845 4.55447 4.61467 4.69575 4.75153 4.80660 4.84996 4.85316 4.91998 4.92707 4.97028 5.10798 5.17364 5.22339 5.27931 5.30647 5.53566 5.88101 6.41848 6.61494 7.06139 7.24354 7.81036 8.22180 9.04549 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021016 B = 0.008307 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.007988 B = 3369.760221 C = 4345.308066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.070 0.930 4 C 0.117 3.883 5 N -0.703 5.703 6 C 0.537 3.463 7 O -0.594 6.594 8 C -0.183 4.183 9 C -0.111 4.111 10 C -0.133 4.133 11 C -0.141 4.141 12 N -0.604 5.604 13 C 0.154 3.846 14 C -0.358 4.358 15 H 0.063 0.937 16 C -0.070 4.070 17 N -0.941 5.941 18 Si 1.104 2.896 19 H -0.302 1.302 20 H -0.274 1.274 21 H -0.276 1.276 22 H 0.040 0.960 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.411 0.589 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.088 0.912 35 H -0.007 1.007 36 H 0.033 0.967 37 H 0.024 0.976 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.677 1.356 -11.041 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.088 0.912 4 C -0.009 4.009 5 N -0.353 5.353 6 C 0.325 3.675 7 O -0.476 6.476 8 C -0.186 4.186 9 C -0.168 4.168 10 C -0.170 4.170 11 C -0.178 4.178 12 N -0.328 5.328 13 C 0.008 3.992 14 C -0.487 4.487 15 H 0.080 0.920 16 C -0.268 4.268 17 N -0.583 5.583 18 Si 0.930 3.070 19 H -0.228 1.228 20 H -0.200 1.200 21 H -0.202 1.202 22 H 0.059 0.941 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.248 0.752 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.011 0.989 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.954 0.778 -10.213 13.605 hybrid contribution -1.311 0.286 -0.759 1.542 sum 7.643 1.065 -10.972 13.414 Atomic orbital electron populations 1.22086 0.96072 1.01324 1.01485 1.20770 0.93490 0.95369 0.85338 0.91222 1.21731 0.80258 1.00248 0.98676 1.45922 1.07873 1.58098 1.23394 1.20115 0.89491 0.76455 0.81411 1.90609 1.71064 1.50509 1.35436 1.21515 0.89459 1.11908 0.95752 1.21345 1.01698 1.02367 0.91401 1.23211 1.01037 0.94121 0.98617 1.23083 1.01739 0.95798 0.97189 1.44144 1.59081 1.06918 1.22607 1.20635 0.96748 0.85209 0.96599 1.20161 1.21502 1.15460 0.91547 0.91971 1.26963 1.04452 0.99788 0.95555 1.70912 1.01773 1.47539 1.38048 0.83005 0.73049 0.76706 0.74266 1.22838 1.20011 1.20181 0.94101 0.90364 0.93570 0.93558 0.91085 0.75155 0.92072 0.88943 0.92894 0.89143 0.84960 0.85545 0.89350 0.98911 0.94850 0.95679 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.19 71.98 0.66 -4.51 16 2 C 0.16 5.99 2.87 44.99 0.13 6.12 16 3 H 0.07 2.66 7.87 -2.39 -0.02 2.64 16 4 C 0.12 4.14 4.91 86.38 0.42 4.56 16 5 N -0.70 -24.68 5.29 -463.06 -2.45 -27.12 16 6 C 0.54 18.69 7.39 87.65 0.65 19.34 16 7 O -0.59 -24.26 16.26 -3.05 -0.05 -24.31 16 8 C -0.18 -4.84 2.61 -52.93 -0.14 -4.98 16 9 C -0.11 -2.69 9.79 71.98 0.70 -1.98 16 10 C -0.13 -2.68 9.88 30.62 0.30 -2.38 16 11 C -0.14 -3.10 9.77 30.62 0.30 -2.80 16 12 N -0.60 -27.81 2.16 -702.79 -1.52 -29.33 16 13 C 0.15 7.23 8.06 127.77 1.03 8.26 16 14 C -0.36 -18.24 9.12 84.03 0.77 -17.47 16 15 H 0.06 3.09 7.95 -2.91 -0.02 3.07 16 16 C -0.07 -3.77 4.60 84.86 0.39 -3.38 16 17 N -0.94 -55.66 12.75 21.65 0.28 -55.38 16 18 Si 1.10 48.16 30.01 68.60 2.06 50.22 16 19 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.05 1.60 7.67 -2.38 -0.02 1.58 16 25 H 0.05 1.76 6.90 -2.39 -0.02 1.75 16 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.41 14.64 6.19 -92.71 -0.57 14.07 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.68 7.90 -2.39 -0.02 1.66 16 30 H 0.05 1.49 6.39 -2.39 -0.02 1.48 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.13 1.90 8.05 -2.39 -0.02 1.88 16 33 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.26 7.67 -2.38 -0.02 2.24 16 35 H -0.01 -0.36 6.87 -2.39 -0.02 -0.37 16 36 H 0.03 1.42 6.54 -2.39 -0.02 1.40 16 37 H 0.02 1.27 7.28 -2.38 -0.02 1.25 16 38 H 0.26 15.45 6.38 -92.71 -0.59 14.86 16 Total: -1.00 -64.30 308.50 4.18 -60.12 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.64 Total: 25.03 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 5.22 Total: 0.77 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -3.69 Total: -111.84 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.31 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.06 Total: 50.22 kcal Total: -64.30 4.18 -60.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282391614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.194 kcal (2) G-P(sol) polarization free energy of solvation -64.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds