Wall clock time and date at job start Thu Apr 9 2020 12:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47622 * 2 1 4 4 C 1.46499 * 120.00378 * 270.00592 * 3 2 1 5 5 C 1.53004 * 109.46835 * 269.99922 * 4 3 2 6 6 N 1.46499 * 109.46835 * 179.97438 * 5 4 3 7 7 C 1.36939 * 119.99923 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99954 * 359.97438 * 7 6 5 9 9 C 1.38815 * 120.00119 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99831 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99842 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46767 * 90.00092 * 11 9 7 13 13 H 1.48505 * 109.47053 * 209.99850 * 11 9 7 14 14 H 1.48495 * 109.47206 * 330.00003 * 11 9 7 15 15 C 1.34777 * 120.00069 * 89.99949 * 3 2 1 16 16 O 1.21278 * 120.00088 * 180.02562 * 15 3 2 17 17 C 1.50703 * 119.99745 * 0.02562 * 15 3 2 18 18 C 1.53781 * 113.61417 * 179.97438 * 17 15 3 19 19 C 1.53786 * 87.17350 * 139.93966 * 18 17 15 20 20 C 1.53782 * 113.61283 * 277.49692 * 17 15 3 21 21 H 1.09002 * 109.46780 * 299.99965 * 1 2 3 22 22 H 1.09001 * 109.47067 * 59.99337 * 1 2 3 23 23 H 1.08991 * 109.47768 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46780 * 240.00034 * 2 1 3 25 25 H 1.09001 * 109.47067 * 120.00662 * 2 1 3 26 26 H 1.09003 * 109.47476 * 29.99443 * 4 3 2 27 27 H 1.08999 * 109.47686 * 149.99606 * 4 3 2 28 28 H 1.08997 * 109.46874 * 299.99109 * 5 4 3 29 29 H 1.08996 * 109.46914 * 59.99805 * 5 4 3 30 30 H 0.96999 * 120.00529 * 359.97438 * 6 5 4 31 31 H 0.96999 * 119.99557 * 180.02562 * 10 9 7 32 32 H 1.08996 * 112.85169 * 48.79875 * 17 15 3 33 33 H 1.09002 * 113.61445 * 254.52965 * 18 17 15 34 34 H 1.09002 * 113.61408 * 25.34696 * 18 17 15 35 35 H 1.08993 * 113.61491 * 89.15923 * 19 18 17 36 36 H 1.09000 * 113.61138 * 220.06261 * 19 18 17 37 37 H 1.08997 * 113.61668 * 334.56418 * 20 17 15 38 38 H 1.08998 * 113.61674 * 105.38927 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 7 3.9515 2.5215 -2.9794 7 6 5.1835 2.4484 -3.5728 8 1 5.9754 1.8823 -3.1050 9 6 5.4145 3.1019 -4.7754 10 7 4.4493 3.7915 -5.3457 11 14 7.0954 3.0027 -5.5844 12 1 7.1367 1.8327 -6.4979 13 1 7.3459 4.2447 -6.3592 14 1 8.1396 2.8520 -4.5395 15 6 2.2431 2.0165 1.1672 16 8 2.6470 3.1600 1.1672 17 6 1.9924 1.3058 2.4723 18 6 2.2970 2.1657 3.7103 19 6 1.0348 1.5605 4.3471 20 6 0.5196 1.3305 2.9141 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0275 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.5817 1.6878 -2.0284 27 1 2.0956 3.1411 -1.1383 28 1 4.3883 2.2154 -0.9508 29 1 3.8744 0.7621 -1.8408 30 1 3.2402 3.0297 -3.3997 31 1 4.6107 4.2478 -6.1863 32 1 2.4436 0.3143 2.5079 33 1 3.2196 1.8867 4.2195 34 1 2.2225 3.2375 3.5266 35 1 1.2222 0.6381 4.8966 36 1 0.4442 2.2799 4.9144 37 1 -0.0425 2.1739 2.5131 38 1 0.0072 0.3780 2.7794 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320662029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:27 Heat of formation + Delta-G solvation = -30.600861 kcal Electronic energy + Delta-G solvation = -17494.457821 eV Core-core repulsion = 14757.909610 eV Total energy + Delta-G solvation = -2736.548211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.50454 -38.66808 -37.40217 -36.36410 -33.62063 -31.56722 -29.75947 -27.46224 -26.57751 -25.47126 -24.20988 -23.29140 -21.07789 -19.66644 -19.18980 -18.36805 -17.42831 -16.82132 -16.46425 -15.97424 -15.56310 -15.23476 -15.08073 -14.76207 -14.51643 -13.98644 -13.57703 -13.36888 -13.13294 -13.01949 -12.93708 -12.76217 -12.64383 -12.27872 -12.19778 -12.15363 -11.93062 -11.88856 -11.36116 -11.14963 -11.00880 -10.64740 -9.72645 -9.10359 -8.00460 -5.31912 1.44398 1.47654 1.56140 1.61234 1.98199 2.54001 3.32619 3.49377 3.64590 3.71649 3.92719 3.95077 4.02887 4.15872 4.19310 4.28129 4.45835 4.51050 4.55887 4.75696 4.81192 4.86970 4.89237 4.97597 5.03095 5.06262 5.07730 5.12341 5.21590 5.40573 5.43038 5.52375 5.60307 6.20831 6.45727 7.20392 7.26811 7.97731 8.23812 9.23052 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040644 B = 0.004678 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.735978 B = 5983.926549 C = 6323.871795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.122 3.878 5 C 0.151 3.849 6 N -0.744 5.744 7 C -0.254 4.254 8 H 0.073 0.927 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.980 3.020 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.272 1.272 15 C 0.509 3.491 16 O -0.593 6.593 17 C -0.134 4.134 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.115 4.115 21 H 0.068 0.932 22 H 0.043 0.957 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.054 0.946 28 H -0.003 1.003 29 H 0.030 0.970 30 H 0.375 0.625 31 H 0.254 0.746 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.817 -12.074 18.500 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.336 5.336 4 C -0.002 4.002 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.386 4.386 8 H 0.091 0.909 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.808 3.192 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.197 1.197 15 C 0.299 3.701 16 O -0.474 6.474 17 C -0.155 4.155 18 C -0.170 4.170 19 C -0.163 4.163 20 C -0.153 4.153 21 H 0.086 0.914 22 H 0.062 0.938 23 H 0.111 0.889 24 H 0.099 0.901 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.015 0.985 29 H 0.048 0.952 30 H 0.207 0.793 31 H 0.063 0.937 32 H 0.157 0.843 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.443 -11.555 18.489 24.175 hybrid contribution 0.833 0.757 -1.164 1.619 sum -9.610 -10.797 17.325 22.563 Atomic orbital electron populations 1.22308 0.94369 1.03787 1.02473 1.21908 0.95692 0.80125 1.04709 1.48100 1.65041 1.15708 1.04716 1.21273 0.95753 0.97426 0.85753 1.20932 0.94870 0.95160 0.86737 1.42407 1.12128 1.61217 1.22954 1.19603 0.90304 1.25977 1.02707 0.90923 1.25650 1.01881 1.00179 0.98733 1.69824 1.33747 1.38425 1.19828 0.85056 0.79041 0.76925 0.78200 1.20621 1.21825 1.19689 1.21478 0.75675 0.86265 0.86668 1.90683 1.47795 1.20824 1.88074 1.22969 1.01491 1.01424 0.89577 1.22846 1.00110 0.99156 0.94904 1.22857 0.95564 1.02104 0.95738 1.22919 0.92470 1.03463 0.96423 0.91351 0.93796 0.88882 0.90090 0.87630 0.89088 0.92721 0.98492 0.95165 0.79295 0.93711 0.84281 0.90473 0.91848 0.87378 0.90615 0.91438 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.22 71.98 0.74 -1.76 16 2 C 0.10 1.79 5.93 86.38 0.51 2.30 16 3 N -0.60 -17.41 2.47 -821.82 -2.03 -19.44 16 4 C 0.12 4.51 5.52 86.38 0.48 4.98 16 5 C 0.15 6.79 6.58 86.38 0.57 7.36 16 6 N -0.74 -41.05 5.60 -343.45 -1.92 -42.97 16 7 C -0.25 -15.13 9.99 84.03 0.84 -14.29 16 8 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 10 N -0.97 -61.15 13.06 21.65 0.28 -60.87 16 11 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 15 C 0.51 15.86 7.20 87.66 0.63 16.49 16 16 O -0.59 -25.19 15.48 -3.02 -0.05 -25.24 16 17 C -0.13 -2.64 2.96 -11.01 -0.03 -2.67 16 18 C -0.13 -2.66 7.40 31.12 0.23 -2.43 16 19 C -0.13 -1.59 8.10 31.20 0.25 -1.34 16 20 C -0.12 -1.65 5.89 31.20 0.18 -1.47 16 21 H 0.07 0.93 5.12 -2.39 -0.01 0.92 16 22 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.08 1.54 8.07 -2.39 -0.02 1.52 16 25 H 0.11 1.34 6.22 -2.39 -0.01 1.33 16 26 H 0.09 3.05 8.07 -2.39 -0.02 3.03 16 27 H 0.05 2.33 7.42 -2.39 -0.02 2.31 16 28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.38 21.63 7.67 -92.71 -0.71 20.92 16 31 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.14 1.95 6.95 -2.39 -0.02 1.94 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.68 7.43 -2.39 -0.02 1.66 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 38 H 0.11 0.92 7.18 -2.39 -0.02 0.91 16 Total: -1.00 -76.40 308.14 3.50 -72.90 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.33 Total: 22.72 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 4.87 Total: 3.34 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -3.67 Total: -123.29 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -76.40 3.50 -72.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320662029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.304 kcal (2) G-P(sol) polarization free energy of solvation -76.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds