Wall clock time and date at job start Thu Apr 9 2020 12:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.53009 * 109.47238 * 270.00499 * 4 3 2 6 6 N 1.46497 * 109.47238 * 179.97438 * 5 4 3 7 7 C 1.36934 * 120.00370 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00367 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99961 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99931 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46861 * 60.00677 * 11 9 7 13 13 H 1.48502 * 109.47272 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47481 * 300.00367 * 11 9 7 15 15 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 3 2 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 3 2 18 18 H 1.09003 * 115.54935 * 325.99872 * 17 15 3 19 19 C 1.53000 * 117.50122 * 111.66891 * 17 15 3 20 20 C 1.53002 * 60.00078 * 107.49109 * 19 17 15 21 21 H 1.09007 * 117.49942 * 252.51306 * 20 19 17 22 22 C 1.52993 * 117.50059 * 107.49350 * 20 19 17 23 23 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 24 24 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 25 25 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 27 27 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 28 28 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 29 29 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 30 30 H 1.09000 * 109.46757 * 299.99562 * 5 4 3 31 31 H 1.08993 * 109.47081 * 59.99692 * 5 4 3 32 32 H 0.97001 * 120.00037 * 359.97438 * 6 5 4 33 33 H 0.97004 * 119.99711 * 179.97438 * 10 9 7 34 34 H 1.08996 * 117.49976 * 214.97516 * 19 17 15 35 35 H 1.08997 * 117.49410 * 359.97438 * 19 17 15 36 36 H 1.08999 * 109.46965 * 351.37747 * 22 20 19 37 37 H 1.08998 * 109.47697 * 111.37865 * 22 20 19 38 38 H 1.09000 * 109.47324 * 231.37937 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9517 2.5214 -2.9794 7 6 5.1837 2.4484 -3.5726 8 1 5.9756 1.8823 -3.1048 9 6 5.4148 3.1018 -4.7753 10 7 4.4498 3.7921 -5.3452 11 14 7.0956 3.0026 -5.5842 12 1 7.4202 1.5838 -5.8787 13 1 7.0827 3.7798 -6.8496 14 1 8.1199 3.5649 -4.6678 15 6 2.2430 2.0166 1.1672 16 8 2.6477 3.1599 1.1672 17 6 1.9859 1.3083 2.4723 18 1 1.1507 0.6078 2.4704 19 6 3.1984 0.9596 3.3377 20 6 2.2536 2.0856 3.7627 21 1 2.6158 3.1093 3.6676 22 6 1.3286 1.8205 4.9520 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0957 3.1410 -1.1384 30 1 4.3884 2.2155 -0.9507 31 1 3.8746 0.7622 -1.8407 32 1 3.2404 3.0295 -3.3998 33 1 4.6115 4.2490 -6.1855 34 1 3.1609 0.0300 3.9056 35 1 4.1821 1.2422 2.9629 36 1 1.3887 0.7687 5.2317 37 1 1.6351 2.4388 5.7957 38 1 0.3028 2.0650 4.6762 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320672579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:30 Heat of formation + Delta-G solvation = -6.136908 kcal Electronic energy + Delta-G solvation = -17280.619071 eV Core-core repulsion = 14545.131697 eV Total energy + Delta-G solvation = -2735.487374 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.12560 -37.22028 -35.91263 -34.52689 -31.74647 -30.26209 -29.10548 -27.61089 -24.58901 -23.61145 -22.65584 -21.44551 -20.64880 -18.76982 -17.32879 -17.04683 -16.06119 -15.33015 -14.60112 -14.38086 -14.16359 -13.88348 -13.44853 -13.42119 -13.18713 -13.02988 -12.91334 -12.49481 -12.27635 -11.79577 -11.54472 -11.25609 -11.20700 -10.94680 -10.86350 -10.63283 -10.45409 -10.16165 -10.11553 -9.74184 -9.54005 -8.83402 -8.46218 -6.89671 -5.72679 -3.01816 2.62118 3.07442 3.47397 3.51232 3.52865 3.74679 4.39968 4.63887 4.65019 4.67794 4.87341 4.98685 5.14391 5.16088 5.33267 5.41383 5.53494 5.54353 5.57667 5.65311 5.69058 5.70115 5.83011 5.86146 5.88151 6.07623 6.10978 6.17321 6.20225 6.63348 6.79501 6.97093 7.59078 7.72963 8.38258 8.46178 9.56626 10.13217 10.48489 11.50267 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.034465 B = 0.004680 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.229852 B = 5981.744055 C = 6366.694252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.604 5.604 4 C 0.108 3.892 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.286 1.286 15 C 0.540 3.460 16 O -0.535 6.535 17 C -0.189 4.189 18 H 0.122 0.878 19 C -0.150 4.150 20 C -0.126 4.126 21 H 0.117 0.883 22 C -0.122 4.122 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.384 0.616 33 H 0.256 0.744 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.253 -9.634 17.680 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.337 5.337 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.328 3.672 16 O -0.411 6.411 17 C -0.210 4.210 18 H 0.140 0.860 19 C -0.187 4.187 20 C -0.144 4.144 21 H 0.135 0.865 22 C -0.179 4.179 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.217 0.783 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.872 -9.058 17.619 21.707 hybrid contribution 0.622 -0.019 -0.815 1.025 sum -8.250 -9.077 16.804 20.804 Atomic orbital electron populations 1.22233 0.96059 1.02101 1.02613 1.21567 0.94179 0.82691 1.03479 1.47844 1.65574 1.14201 1.06069 1.21689 0.98071 0.98378 0.83303 1.20900 0.92814 0.95443 0.89332 1.42207 1.12879 1.60848 1.21586 1.19169 0.89318 1.26168 1.02317 0.91275 1.24744 0.97846 1.00336 0.98034 1.69656 1.31648 1.37382 1.19590 0.86235 0.83764 0.77359 0.78642 1.21271 1.21633 1.21232 1.19657 0.77142 0.86088 0.84356 1.90719 1.45432 1.17835 1.87138 1.22366 1.02769 1.05147 0.90743 0.86021 1.23094 0.94427 0.99863 1.01311 1.22377 1.00712 0.98214 0.93113 0.86503 1.21384 0.98726 1.01551 0.96224 0.92601 0.92002 0.91565 0.89869 0.90374 0.90567 0.89810 0.96026 0.96488 0.78273 0.93448 0.87936 0.88165 0.92465 0.91761 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.12 37.16 0.38 -1.16 16 2 C 0.10 1.12 5.76 -4.04 -0.02 1.10 16 3 N -0.60 -9.01 2.47 -173.68 -0.43 -9.44 16 4 C 0.11 1.95 5.52 -4.04 -0.02 1.93 16 5 C 0.14 3.16 6.58 -4.04 -0.03 3.14 16 6 N -0.73 -19.65 5.60 -59.91 -0.34 -19.98 16 7 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 11 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.54 8.58 7.46 -10.98 -0.08 8.50 16 16 O -0.53 -10.89 15.84 5.55 0.09 -10.80 16 17 C -0.19 -2.15 4.52 -91.77 -0.42 -2.56 16 18 H 0.12 1.10 6.46 -51.93 -0.34 0.76 16 19 C -0.15 -1.50 9.88 -26.73 -0.26 -1.76 16 20 C -0.13 -1.33 5.92 -90.62 -0.54 -1.87 16 21 H 0.12 1.49 7.67 -51.92 -0.40 1.09 16 22 C -0.12 -0.94 10.19 37.15 0.38 -0.56 16 23 H 0.05 0.49 7.44 -51.93 -0.39 0.11 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.08 0.69 6.65 -51.93 -0.35 0.35 16 28 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 29 H 0.08 1.69 7.42 -51.93 -0.39 1.30 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.38 10.68 7.67 -40.82 -0.31 10.37 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -34.06 317.81 -7.38 -41.44 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.33 Total: 5.20 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.86 Total: -0.92 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.04 Total: -57.73 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.06 -7.38 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320672579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.307 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds