Wall clock time and date at job start Thu Apr 9 2020 12:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47408 * 2 1 4 4 C 1.52997 * 109.47055 * 239.99349 * 2 1 3 5 5 N 1.46501 * 109.47430 * 185.00140 * 4 2 1 6 6 C 1.46501 * 120.00056 * 270.00714 * 5 4 2 7 7 C 1.34776 * 120.00138 * 89.99977 * 5 4 2 8 8 O 1.21282 * 119.99788 * 0.02562 * 7 5 4 9 9 C 1.50700 * 119.99904 * 180.02562 * 7 5 4 10 10 C 1.53786 * 113.61132 * 180.02562 * 9 7 5 11 11 C 1.53781 * 87.17350 * 220.06314 * 10 9 7 12 12 C 1.53782 * 87.08260 * 25.39213 * 11 10 9 13 13 N 1.46500 * 109.47062 * 119.99957 * 2 1 3 14 14 C 1.36943 * 119.99883 * 274.99571 * 13 2 1 15 15 H 1.07995 * 120.00023 * 0.02562 * 14 13 2 16 16 C 1.38816 * 119.99798 * 179.97438 * 14 13 2 17 17 N 1.31619 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99554 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47188 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47086 * 120.00070 * 18 16 14 21 21 H 1.48501 * 109.46767 * 239.99907 * 18 16 14 22 22 H 1.09005 * 109.47125 * 300.00348 * 1 2 3 23 23 H 1.08994 * 109.47116 * 60.00328 * 1 2 3 24 24 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47113 * 65.00373 * 4 2 1 26 26 H 1.08997 * 109.47480 * 305.00619 * 4 2 1 27 27 H 1.08999 * 109.46814 * 269.99935 * 6 5 4 28 28 H 1.08998 * 109.47398 * 29.99299 * 6 5 4 29 29 H 1.08997 * 109.47401 * 149.99853 * 6 5 4 30 30 H 1.08993 * 112.91004 * 311.25189 * 9 7 5 31 31 H 1.09002 * 113.61357 * 105.47231 * 10 9 7 32 32 H 1.09002 * 113.61608 * 334.65393 * 10 9 7 33 33 H 1.09001 * 113.61695 * 139.93969 * 11 10 9 34 34 H 1.08997 * 113.61223 * 270.84552 * 11 10 9 35 35 H 1.08997 * 113.61668 * 89.11298 * 12 11 10 36 36 H 1.08998 * 113.61674 * 219.93807 * 12 11 10 37 37 H 0.96996 * 120.00530 * 95.00068 * 13 2 1 38 38 H 0.96993 * 119.99805 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8266 -1.1905 6 6 4.3343 0.2338 -1.7612 7 6 4.0757 -1.8988 -0.6114 8 8 3.3850 -2.7769 -0.1393 9 6 5.5776 -2.0067 -0.5507 10 6 6.0757 -3.2873 0.1399 11 6 7.1618 -2.4194 0.7972 12 6 6.2063 -1.2276 0.6190 13 7 2.0183 -0.6906 1.1962 14 6 2.1492 -0.0074 2.3758 15 1 1.8920 1.0404 2.4243 16 6 2.6114 -0.6619 3.5093 17 7 2.9243 -1.9390 3.4503 18 14 2.7892 0.2699 5.1185 19 1 2.3755 1.6824 4.9210 20 1 1.9281 -0.3586 6.1522 21 1 4.2059 0.2269 5.5615 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.7517 -0.1585 -2.1370 26 1 1.6053 -1.7199 -1.2951 27 1 4.5424 0.0090 -2.8073 28 1 3.8091 1.1864 -1.6919 29 1 5.2722 0.2950 -1.2092 30 1 6.0560 -1.8145 -1.5109 31 1 6.4707 -4.0312 -0.5521 32 1 5.3626 -3.7063 0.8499 33 1 7.3525 -2.6739 1.8398 34 1 8.0741 -2.3397 0.2062 35 1 5.5280 -1.0823 1.4597 36 1 6.7069 -0.3083 0.3152 37 1 2.2490 -1.6317 1.1527 38 1 3.2469 -2.3963 4.2425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331368672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:43 Heat of formation + Delta-G solvation = -4.076203 kcal Electronic energy + Delta-G solvation = -18603.009202 eV Core-core repulsion = 15867.611186 eV Total energy + Delta-G solvation = -2735.398016 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.84479 -37.32060 -35.57418 -34.21820 -31.86103 -28.65409 -27.29926 -26.54525 -25.18268 -24.47436 -23.43280 -20.28247 -19.38427 -18.33139 -17.22857 -16.60815 -15.68654 -15.05750 -14.83991 -14.43428 -13.81693 -13.62725 -13.03314 -12.66196 -12.30112 -12.20052 -12.11053 -11.94497 -11.74633 -11.51471 -11.35589 -11.11620 -10.80674 -10.68150 -10.58876 -10.27844 -10.10089 -9.99285 -9.93055 -9.48947 -8.92633 -8.76596 -7.95713 -6.75247 -5.57083 -2.86342 3.35346 3.48234 3.54083 3.56352 3.63567 4.69794 4.94666 5.00100 5.10422 5.22649 5.33984 5.45975 5.59000 5.61405 5.69060 5.81728 5.87897 5.94307 6.03096 6.09500 6.17728 6.18770 6.28918 6.35045 6.47240 6.53616 6.55255 6.75052 6.87329 6.94985 7.07081 7.25290 7.82186 8.02313 8.59362 8.96071 9.71908 10.36130 10.75648 11.62907 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.011394 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.246099 B = 2456.950498 C = 3509.250160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.041 0.959 4 C 0.110 3.890 5 N -0.610 5.610 6 C 0.085 3.915 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.134 4.134 10 C -0.115 4.115 11 C -0.143 4.143 12 C -0.118 4.118 13 N -0.721 5.721 14 C -0.236 4.236 15 H 0.064 0.936 16 C -0.013 4.013 17 N -0.918 5.918 18 Si 0.896 3.104 19 H -0.283 1.283 20 H -0.294 1.294 21 H -0.294 1.294 22 H 0.053 0.947 23 H 0.034 0.966 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 2.888 -11.762 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.059 0.941 4 C -0.014 4.014 5 N -0.344 5.344 6 C -0.058 4.058 7 C 0.319 3.681 8 O -0.392 6.392 9 C -0.156 4.156 10 C -0.153 4.153 11 C -0.180 4.180 12 C -0.156 4.156 13 N -0.367 5.367 14 C -0.367 4.367 15 H 0.082 0.918 16 C -0.209 4.209 17 N -0.566 5.566 18 Si 0.728 3.272 19 H -0.208 1.208 20 H -0.221 1.221 21 H -0.221 1.221 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.238 0.762 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.708 2.503 -11.378 12.973 hybrid contribution 0.099 0.496 0.932 1.061 sum 5.807 2.999 -10.446 12.322 Atomic orbital electron populations 1.22415 0.99289 1.00918 0.99821 1.20633 0.91889 0.95494 0.87719 0.94060 1.21800 0.79740 1.01881 0.97977 1.47588 1.06392 1.21234 1.59193 1.21657 0.95889 0.91052 0.97241 1.20255 0.89910 0.81245 0.76675 1.90666 1.64300 1.39933 1.44265 1.22715 0.92616 1.00612 0.99610 1.22767 0.98049 0.94770 0.99679 1.22796 0.96735 0.97290 1.01217 1.22869 0.98289 0.96197 0.98247 1.42733 1.77565 1.11802 1.04561 1.19235 1.36224 0.93577 0.87699 0.91824 1.24707 1.02781 0.95884 0.97529 1.69756 1.50660 1.08220 1.28008 0.86285 0.77177 0.78796 0.84981 1.20844 1.22102 1.22111 0.92738 0.94694 0.93413 0.91416 0.90472 0.93669 0.91537 0.91242 0.88361 0.92033 0.88007 0.91187 0.90826 0.87793 0.91812 0.76221 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.49 37.16 0.35 -2.75 16 2 C 0.15 3.21 3.20 -67.93 -0.22 2.99 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 C 0.11 1.94 5.14 -4.04 -0.02 1.92 16 5 N -0.61 -10.63 2.77 -181.57 -0.50 -11.14 16 6 C 0.09 1.10 10.11 59.85 0.60 1.71 16 7 C 0.53 10.56 6.50 -10.99 -0.07 10.48 16 8 O -0.52 -12.60 13.21 5.56 0.07 -12.53 16 9 C -0.13 -2.16 2.79 -90.86 -0.25 -2.42 16 10 C -0.11 -1.87 7.40 -25.92 -0.19 -2.06 16 11 C -0.14 -2.07 8.08 -25.92 -0.21 -2.28 16 12 C -0.12 -1.95 6.93 -25.82 -0.18 -2.13 16 13 N -0.72 -19.00 4.52 -53.43 -0.24 -19.24 16 14 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 15 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.92 -28.63 13.06 55.49 0.72 -27.91 16 18 Si 0.90 22.94 29.55 -169.99 -5.02 17.92 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 21 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 22 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 26 H 0.08 1.50 7.42 -51.93 -0.39 1.11 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.07 0.87 5.80 -51.93 -0.30 0.57 16 30 H 0.10 1.27 7.84 -51.93 -0.41 0.87 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 2.05 7.43 -51.93 -0.39 1.66 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 2.25 8.09 -51.93 -0.42 1.83 16 36 H 0.06 0.89 7.70 -51.93 -0.40 0.49 16 37 H 0.40 11.50 5.02 -40.82 -0.20 11.29 16 38 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 306.17 15.07 4.61 4.61 Total: -1.00 -33.45 306.17 -7.06 -40.51 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.27 Total: 9.67 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.43 Total: -1.90 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.02 Total: -58.29 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.07 Total: -12.53 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.45 -7.06 -40.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331368672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.431 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds