Wall clock time and date at job start Thu Apr 9 2020 12:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.47123 * 2 1 4 4 C 1.50703 * 109.47324 * 119.99496 * 2 1 3 5 5 H 1.07999 * 120.00125 * 119.99778 * 4 2 1 6 6 C 1.37882 * 120.00109 * 300.00977 * 4 2 1 7 7 N 1.31518 * 119.99816 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99922 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46957 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46987 * 119.99500 * 8 6 4 11 11 H 1.48497 * 109.46763 * 239.99501 * 8 6 4 12 12 C 1.50698 * 109.47547 * 239.99868 * 2 1 3 13 13 O 1.21283 * 120.00229 * 239.99975 * 12 2 1 14 14 N 1.34778 * 119.99903 * 59.99681 * 12 2 1 15 15 C 1.46496 * 119.99978 * 174.80856 * 14 12 2 16 16 C 1.52999 * 110.43779 * 301.95302 * 15 14 12 17 17 N 1.46901 * 109.47103 * 307.80874 * 16 15 14 18 18 C 1.54895 * 110.48596 * 179.26974 * 15 14 12 19 19 C 1.54891 * 102.74748 * 279.26650 * 18 15 14 20 20 C 1.54266 * 104.19591 * 322.05647 * 19 18 15 21 21 C 1.53879 * 106.59973 * 23.61368 * 20 19 18 22 22 H 1.09000 * 109.46975 * 300.00210 * 1 2 3 23 23 H 1.09004 * 109.46695 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46700 * 60.00375 * 1 2 3 25 25 H 0.96994 * 119.99703 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99787 * 354.81370 * 14 12 2 27 27 H 1.09000 * 109.46815 * 67.80728 * 16 15 14 28 28 H 1.09000 * 109.47195 * 187.81033 * 16 15 14 29 29 H 1.00898 * 110.99999 * 174.83651 * 17 16 15 30 30 H 1.00897 * 111.00336 * 298.79314 * 17 16 15 31 31 H 1.09001 * 110.75414 * 37.57833 * 18 15 14 32 32 H 1.08997 * 110.75525 * 160.94775 * 18 15 14 33 33 H 1.09003 * 110.48350 * 203.38154 * 19 18 15 34 34 H 1.09000 * 110.48851 * 80.73363 * 19 18 15 35 35 H 1.09005 * 110.03346 * 264.32637 * 20 19 18 36 36 H 1.09001 * 110.03642 * 142.89397 * 20 19 18 37 37 H 1.09005 * 110.03131 * 240.71761 * 21 20 19 38 38 H 1.08994 * 110.03433 * 119.28228 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3214 -1.1202 4.0081 9 1 3.1456 -2.2874 3.6039 10 1 3.1465 -0.1871 4.8165 11 1 1.1661 -1.5865 4.8161 12 6 2.0325 -0.7104 -1.2304 13 8 2.7298 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.2863 -0.8704 -3.6485 16 6 3.8138 -0.8004 -3.5991 17 7 4.2326 0.5854 -3.3496 18 6 1.7505 -0.1848 -4.9299 19 6 0.3662 -0.8529 -5.1217 20 6 0.5960 -2.3230 -4.7148 21 6 1.8168 -2.3342 -3.7780 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 -0.8900 25 1 0.7092 1.1618 3.4843 26 1 1.0889 0.4922 -2.5450 27 1 4.1812 -1.4409 -2.7973 28 1 4.2240 -1.1381 -4.5508 29 1 5.2326 0.6447 -3.2288 30 1 3.9209 1.1962 -4.0896 31 1 1.6433 0.8891 -4.7774 32 1 2.4007 -0.3924 -5.7797 33 1 0.0535 -0.7900 -6.1640 34 1 -0.3749 -0.3884 -4.4712 35 1 0.7981 -2.9280 -5.5987 36 1 -0.2796 -2.7069 -4.1914 37 1 2.6114 -2.9445 -4.2074 38 1 1.5335 -2.7234 -2.8001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339857859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:12:52 Heat of formation + Delta-G solvation = -55.192771 kcal Electronic energy + Delta-G solvation = -18353.853763 eV Core-core repulsion = 15616.239167 eV Total energy + Delta-G solvation = -2737.614596 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73785 -37.19495 -33.97879 -33.54556 -32.30727 -30.21778 -28.69677 -27.79272 -25.01828 -23.47796 -22.60743 -20.46337 -19.78544 -18.47252 -16.31525 -15.95661 -15.80699 -15.60893 -14.71626 -14.37507 -14.19068 -13.82275 -13.46449 -12.93263 -12.75551 -12.53841 -12.23355 -11.55669 -11.27379 -11.16709 -11.03031 -10.97681 -10.92058 -10.62603 -10.57862 -10.40010 -10.34022 -10.07903 -9.84484 -8.82883 -8.50023 -8.35937 -8.10644 -8.06614 -5.92524 -3.94268 3.38218 3.45342 3.54000 3.98002 4.09586 4.55844 4.56283 4.70420 4.89518 4.97297 5.40166 5.40989 5.49678 5.52252 5.66433 5.73673 5.82994 5.88889 5.97590 6.10496 6.17068 6.31251 6.36834 6.53583 6.62520 6.74028 6.96285 7.08037 7.29503 7.49081 7.64069 7.67021 7.88920 8.12665 8.33109 8.69302 9.15303 9.52490 9.71279 11.15310 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033410 B = 0.006722 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.869190 B = 4164.594525 C = 4357.084323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.493 4.493 5 H 0.073 0.927 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.533 3.467 13 O -0.551 6.551 14 N -0.719 5.719 15 C 0.181 3.819 16 C 0.057 3.943 17 N -0.836 5.836 18 C -0.127 4.127 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.129 4.129 22 H 0.091 0.909 23 H 0.028 0.972 24 H 0.010 0.990 25 H 0.258 0.742 26 H 0.392 0.608 27 H 0.092 0.908 28 H 0.021 0.979 29 H 0.338 0.662 30 H 0.331 0.669 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -0.461 -16.016 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.532 4.532 5 H 0.092 0.908 6 C -0.144 4.144 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 C 0.323 3.677 13 O -0.428 6.428 14 N -0.372 5.372 15 C 0.093 3.907 16 C -0.075 4.075 17 N -0.365 5.365 18 C -0.165 4.165 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.168 4.168 22 H 0.109 0.891 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.225 0.775 27 H 0.110 0.890 28 H 0.039 0.961 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.203 -1.133 -15.116 15.160 hybrid contribution 0.543 -0.102 -0.131 0.568 sum 0.746 -1.235 -15.247 15.315 Atomic orbital electron populations 1.21733 0.97012 0.99521 1.00699 1.18842 0.93757 0.96929 0.89730 0.93081 1.21212 1.30343 1.12514 0.89091 0.90847 1.24950 0.95312 0.95128 0.99029 1.69891 1.37540 1.23258 1.23167 0.86448 0.78554 0.79788 0.82742 1.19653 1.21162 1.21192 1.21627 0.78189 0.83684 0.84231 1.90459 1.38659 1.26806 1.86837 1.45983 1.48980 1.37393 1.04797 1.20904 0.91855 0.92421 0.85544 1.22166 0.95030 0.90646 0.99658 1.58455 1.18628 1.07900 1.51516 1.22783 0.96997 0.99958 0.96790 1.22343 0.97049 0.95867 1.00738 1.22118 0.98602 0.96438 0.98833 1.22497 0.97053 0.96273 1.00952 0.89077 0.95235 0.97108 0.93213 0.77478 0.88954 0.96070 0.85003 0.85771 0.90933 0.90930 0.91962 0.91378 0.92351 0.91971 0.91893 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.86 37.16 0.33 -2.78 16 2 C 0.03 0.73 2.65 -92.92 -0.25 0.48 16 3 H 0.05 1.39 8.14 -51.92 -0.42 0.97 16 4 C -0.49 -14.35 8.37 -34.44 -0.29 -14.64 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.93 11.32 55.43 0.63 -25.30 16 8 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 9 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.53 12.23 6.39 -10.99 -0.07 12.16 16 13 O -0.55 -14.13 12.41 5.56 0.07 -14.06 16 14 N -0.72 -12.72 4.73 -46.07 -0.22 -12.94 16 15 C 0.18 2.67 0.53 -130.16 -0.07 2.60 16 16 C 0.06 0.85 5.31 -3.82 -0.02 0.83 16 17 N -0.84 -11.73 9.29 -10.37 -0.10 -11.83 16 18 C -0.13 -1.42 5.29 -24.73 -0.13 -1.55 16 19 C -0.12 -1.33 6.79 -25.07 -0.17 -1.50 16 20 C -0.12 -1.48 6.80 -25.61 -0.17 -1.66 16 21 C -0.13 -1.93 5.67 -25.61 -0.15 -2.08 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.01 0.20 7.46 -51.93 -0.39 -0.19 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.39 6.35 7.77 -40.82 -0.32 6.03 16 27 H 0.09 1.74 6.54 -51.93 -0.34 1.40 16 28 H 0.02 0.27 8.02 -51.93 -0.42 -0.14 16 29 H 0.34 4.27 9.08 -39.29 -0.36 3.91 16 30 H 0.33 3.84 8.50 -39.29 -0.33 3.50 16 31 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 32 H 0.07 0.71 7.97 -51.93 -0.41 0.30 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.88 7.84 -51.93 -0.41 0.48 16 38 H 0.08 1.55 6.54 -51.93 -0.34 1.21 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -31.43 298.36 -7.29 -38.72 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.07 Total: 10.19 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.08 Total: -6.64 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.31 Total: -50.06 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.07 Total: -14.06 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.43 -7.29 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339857859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.469 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds