Wall clock time and date at job start Thu Apr 9 2020 12:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47331 * 2 1 4 4 N 1.46898 * 109.47597 * 119.99900 * 2 1 3 5 5 C 1.53004 * 109.46917 * 239.99877 * 2 1 3 6 6 H 1.08996 * 110.88607 * 303.87992 * 5 2 1 7 7 C 1.55157 * 111.00714 * 67.80674 * 5 2 1 8 8 C 1.54325 * 103.02448 * 153.38120 * 7 5 2 9 9 N 1.47024 * 107.26338 * 338.13959 * 8 7 5 10 10 C 1.34785 * 125.64725 * 178.85211 * 9 8 7 11 11 O 1.21272 * 119.99829 * 185.15924 * 10 9 8 12 12 C 1.50702 * 119.99983 * 5.15418 * 10 9 8 13 13 H 1.09008 * 109.46988 * 34.06252 * 12 10 9 14 14 C 1.53003 * 109.46976 * 274.06407 * 12 10 9 15 15 C 1.50693 * 109.47168 * 154.05928 * 12 10 9 16 16 H 1.08001 * 120.00060 * 359.09395 * 15 12 10 17 17 C 1.37877 * 119.99821 * 179.08585 * 15 12 10 18 18 N 1.31519 * 119.99811 * 209.69165 * 17 15 12 19 19 Si 1.86797 * 120.00131 * 29.69521 * 17 15 12 20 20 H 1.48498 * 109.47048 * 90.02805 * 19 17 15 21 21 H 1.48495 * 109.47012 * 210.02456 * 19 17 15 22 22 H 1.48497 * 109.46941 * 330.02693 * 19 17 15 23 23 C 1.47422 * 108.70533 * 358.58217 * 9 8 7 24 24 H 1.09000 * 109.47095 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46763 * 299.99970 * 1 2 3 26 26 H 1.08996 * 109.47300 * 59.99864 * 1 2 3 27 27 H 1.00902 * 111.00038 * 59.99384 * 4 2 1 28 28 H 1.00898 * 111.00773 * 183.95290 * 4 2 1 29 29 H 1.09007 * 110.71509 * 271.94401 * 7 5 2 30 30 H 1.08998 * 110.71717 * 35.02844 * 7 5 2 31 31 H 1.09001 * 109.99608 * 218.66354 * 8 7 5 32 32 H 1.08998 * 109.78094 * 97.49160 * 8 7 5 33 33 H 1.08991 * 109.46975 * 298.29612 * 14 12 10 34 34 H 1.09004 * 109.46858 * 178.30178 * 14 12 10 35 35 H 1.09002 * 109.47329 * 58.30395 * 14 12 10 36 36 H 0.97002 * 120.00228 * 180.02562 * 18 17 15 37 37 H 1.09004 * 110.36730 * 143.19491 * 23 9 8 38 38 H 1.08997 * 110.36939 * 265.51769 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 2.0399 -0.7213 -1.2493 6 1 1.6342 -1.7313 -1.3077 7 6 1.7095 0.0867 -2.5319 8 6 2.8134 -0.3554 -3.5156 9 7 3.9311 -0.8732 -2.7130 10 6 5.0811 -1.3787 -3.2017 11 8 5.8983 -1.8642 -2.4487 12 6 5.3512 -1.3405 -4.6838 13 1 4.9169 -0.4357 -5.1091 14 6 4.7244 -2.5680 -5.3482 15 6 6.8389 -1.3442 -4.9235 16 1 7.5208 -1.3566 -4.0861 17 6 7.3296 -1.3318 -6.2120 18 7 8.4859 -1.8980 -6.4807 19 14 6.3522 -0.5109 -7.5758 20 1 6.7470 0.9170 -7.6773 21 1 6.6306 -1.1942 -8.8645 22 1 4.9020 -0.6030 -7.2699 23 6 3.5885 -0.7420 -1.2852 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6962 -1.6479 1.2228 28 1 3.0263 -0.6501 1.2559 29 1 0.7226 -0.1786 -2.9113 30 1 1.7719 1.1578 -2.3397 31 1 3.1464 0.4959 -4.1093 32 1 2.4321 -1.1396 -4.1696 33 1 5.1802 -3.4720 -4.9445 34 1 4.8938 -2.5250 -6.4241 35 1 3.6528 -2.5814 -5.1493 36 1 8.8313 -1.8890 -7.3871 37 1 3.9696 -1.5950 -0.7237 38 1 3.9899 0.1880 -0.8826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340260588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:13:00 Heat of formation + Delta-G solvation = -44.275635 kcal Electronic energy + Delta-G solvation = -17867.906273 eV Core-core repulsion = 15130.765080 eV Total energy + Delta-G solvation = -2737.141194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.79650 -37.76632 -35.21643 -33.73052 -31.42578 -30.69614 -28.87266 -28.58091 -25.17947 -24.13440 -22.15560 -21.64652 -20.26917 -18.54490 -16.84226 -16.50710 -15.97800 -15.75009 -14.96322 -14.53249 -14.00404 -13.95687 -13.78070 -13.29763 -12.77266 -12.66343 -12.34570 -12.21253 -12.19650 -11.99040 -11.53796 -11.40439 -11.32246 -10.93487 -10.89537 -10.74532 -10.60603 -10.43897 -9.75499 -9.43801 -8.89788 -8.69821 -8.23438 -8.14265 -6.18781 -4.01041 3.24291 3.34183 3.36304 3.51489 3.56554 4.22883 4.39813 4.50218 4.55189 4.68867 5.07522 5.08953 5.14077 5.19555 5.34797 5.46091 5.60055 5.61450 5.67917 5.82795 5.85709 5.93867 5.95873 6.04622 6.15301 6.28653 6.45498 6.57387 6.70460 6.93918 6.97000 7.24165 7.26354 7.63392 8.09040 8.48144 9.07565 9.09935 9.51738 10.94075 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043629 B = 0.005814 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.626753 B = 4815.141492 C = 5208.444912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.098 3.902 3 H 0.082 0.918 4 N -0.846 5.846 5 C -0.138 4.138 6 H 0.082 0.918 7 C -0.122 4.122 8 C 0.103 3.897 9 N -0.633 5.633 10 C 0.545 3.455 11 O -0.533 6.533 12 C 0.012 3.988 13 H 0.038 0.962 14 C -0.131 4.131 15 C -0.526 4.526 16 H 0.084 0.916 17 C 0.088 3.912 18 N -0.867 5.867 19 Si 0.850 3.150 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.260 1.260 23 C 0.109 3.891 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.339 0.661 28 H 0.344 0.656 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.070 0.930 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.722 4.130 7.995 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.014 4.014 3 H 0.101 0.899 4 N -0.374 5.374 5 C -0.159 4.159 6 H 0.100 0.900 7 C -0.161 4.161 8 C -0.020 4.020 9 N -0.371 5.371 10 C 0.336 3.664 11 O -0.408 6.408 12 C -0.009 4.009 13 H 0.055 0.945 14 C -0.189 4.189 15 C -0.563 4.563 16 H 0.102 0.898 17 C -0.117 4.117 18 N -0.502 5.502 19 Si 0.676 3.324 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.185 1.185 23 C -0.014 4.014 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.421 4.307 8.644 19.919 hybrid contribution 0.084 -0.143 -1.666 1.674 sum -17.337 4.164 6.978 19.147 Atomic orbital electron populations 1.21793 0.94297 1.01967 1.02023 1.21415 0.95545 0.97983 0.86430 0.89942 1.58995 1.16749 1.21401 1.40275 1.23304 0.95669 1.00492 0.96465 0.89973 1.22652 0.98424 1.00304 0.94690 1.21955 0.86825 0.98973 0.94296 1.48761 1.17743 1.64631 1.05934 1.21222 0.77959 0.74905 0.92308 1.90579 1.45105 1.44388 1.60708 1.19115 0.99334 0.95721 0.86767 0.94469 1.21977 0.96746 0.99560 1.00639 1.20659 0.88274 1.53357 0.93999 0.89804 1.24828 0.94892 0.94107 0.97848 1.70178 1.21407 1.37879 1.20696 0.87290 0.81980 0.80963 0.82192 1.20366 1.21191 1.18471 1.22092 0.93335 1.01299 0.84715 0.92846 0.91963 0.92034 0.84858 0.84293 0.90248 0.90560 0.91428 0.91596 0.92621 0.92816 0.95615 0.92563 0.91152 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.35 37.16 0.35 -0.73 16 2 C 0.10 0.87 2.93 -67.71 -0.20 0.67 16 3 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 4 N -0.85 -7.60 9.18 -4.67 -0.04 -7.64 16 5 C -0.14 -1.42 2.73 -88.47 -0.24 -1.66 16 6 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.12 -1.21 5.65 -24.90 -0.14 -1.35 16 8 C 0.10 1.42 6.27 -3.06 -0.02 1.41 16 9 N -0.63 -11.23 3.33 -170.51 -0.57 -11.80 16 10 C 0.54 12.63 6.94 -10.98 -0.08 12.55 16 11 O -0.53 -14.40 16.07 5.56 0.09 -14.31 16 12 C 0.01 0.30 1.68 -92.92 -0.16 0.14 16 13 H 0.04 0.86 5.94 -51.92 -0.31 0.55 16 14 C -0.13 -2.89 8.70 37.16 0.32 -2.57 16 15 C -0.53 -15.38 8.68 -34.44 -0.30 -15.68 16 16 H 0.08 2.78 7.30 -52.49 -0.38 2.40 16 17 C 0.09 2.53 5.12 -17.82 -0.09 2.44 16 18 N -0.87 -26.43 13.96 55.43 0.77 -25.66 16 19 Si 0.85 20.52 26.12 -169.99 -4.44 16.07 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.26 -5.82 6.08 56.52 0.34 -5.47 16 23 C 0.11 1.55 5.48 -2.53 -0.01 1.54 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 27 H 0.34 2.76 9.00 -39.29 -0.35 2.41 16 28 H 0.34 3.15 8.22 -39.29 -0.32 2.83 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 31 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 32 H 0.07 0.89 7.12 -51.93 -0.37 0.52 16 33 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.05 1.19 5.56 -51.93 -0.29 0.90 16 35 H 0.02 0.47 7.12 -51.93 -0.37 0.10 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 1.08 7.99 -51.93 -0.41 0.66 16 38 H 0.06 0.84 8.04 -51.93 -0.42 0.42 16 LS Contribution 299.20 15.07 4.51 4.51 Total: -1.00 -33.20 299.20 -6.41 -39.61 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.17 Total: 2.45 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.57 Total: -3.25 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.16 Total: -45.09 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.09 Total: -14.31 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.44 Total: 16.07 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.20 -6.41 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340260588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.663 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds